Dbfetch
ID GQ376201; SV 2; linear; genomic RNA; STD; VRL; 8220 BP. XX AC GQ376201; XX DT 27-AUG-2009 (Rel. 101, Created) DT 15-NOV-2011 (Rel. 110, Last updated, Version 5) XX DE Diodia vein chlorosis virus segment RNA 2, complete sequence. XX KW . XX OS Diodia vein chlorosis virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8220 RX PUBMED; 21735210. RA Tzanetakis I.E., Wintermantel W.M., Poudel B., Zhou J.; RT "Diodia vein chlorosis virus is a group-1 crinivirus"; RL Arch. Virol. 156(11):2033-2037(2011). XX RN [2] RP 1-8220 RA Tzanetakis I.E.; RT ; RL Submitted (13-JUL-2009) to the INSDC. RL Plant Pathology, University of Arkansas, 217 PTSC, Fayetteville, AR 72701, RL USA XX RN [3] RC Sequence update by submitter RP 1-8220 RA Tzanetakis I.E.; RT ; RL Submitted (23-DEC-2010) to the INSDC. RL Plant Pathology, University of Arkansas, 217 PTSC, Fayetteville, AR 72701, RL USA XX DR MD5; e9343f95646e1bb5e3aa7c8b4852b1b9. DR EuropePMC; PMC3889241; 24426308. XX CC On Dec 23, 2010 this sequence version replaced gi:256387110. XX FH Key Location/Qualifiers FH FT source 1..8220 FT /organism="Diodia vein chlorosis virus" FT /segment="RNA 2" FT /host="Diodia sp." FT /isolate="Fayetteville" FT /mol_type="genomic RNA" FT /country="USA:Fayetteville, AR" FT /collection_date="2009" FT /db_xref="taxon:656520" FT 5'UTR 1..865 FT CDS 866..997 FT /codon_start=1 FT /product="p5" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:E7BKJ8" FT /protein_id="ADU25034.1" FT /translation="MNTDILISCLEKFNINKNFSFENYGSQGRFRFWYNIQYYLKLC" FT CDS 936..2609 FT /codon_start=1 FT /product="heat shock protein 70-like protein" FT /note="HSP70h; p63, ORF2" FT /db_xref="GOA:C8CB43" FT /db_xref="InterPro:IPR003100" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:C8CB43" FT /protein_id="ACU80556.2" FT /translation="MEAKVGLDFGTTFSTISSYVNGVMHVLKINNSEYVPTCLAITSSN FT DVIIGGAAQVLDSSEVSNCYFYDLKRWVGVDRINFEIIRRKIRPQYVAELIDNDVYLTG FT INRGFSCRYTVKQLILLYIETMVRLFSKTDNLNIVSLNVSVPADYKCKQRMFMKSVCDS FT LNFSLRRIINEPSAAAIYSVSKYPKFKYFLMYDFGGGTFDTSLIVRDGKVVTVADTEGD FT SFLGGRDIDNAISRYIMKKHSLKIPLSSDFLASIKEEVNNSDKSNFTASDVQGNIVNVN FT FTKTDLSNCIESFSDRSIRILDNLVSRRKLTEGALFMVGGSSLLKKIQQDVTRYANSKG FT LQCVIDKDLRSSVSYGCSMQHAQEDSGSMTYIDCNSHPLMDLYMYTNPKVIVTKPMPIP FT YTKYDPRMVTSHFNTIVNVYEGSDLFVLNNDWLVSAKLDTRNHVKIGETLTFVYKYSID FT GILYLYAKNEDTKVEKLLPNTFSLTEKIKKLDLQLTQLSTIDESATLLSIISYFDSKYK FT TYLNYLKTPTILEKELAKATSLKALYSELVKFNKNFNSGK" FT CDS 2609..2776 FT /codon_start=1 FT /product="p6" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:E7BKJ9" FT /protein_id="ADU25035.1" FT /translation="MALVVLLLLEMFGGFNSYYLSDNSSFSGQILVIRTEDPKLLTDIL FT LELPYIKERW" FT CDS 2770..4326 FT /codon_start=1 FT /product="p60" FT /note="ORF4, CPh" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:E7BKK0" FT /protein_id="ADU25036.1" FT /translation="MVDIFSNQSVKRFLSFFFKKTDINEELKAINKYLVANYVTENNNL FT YRTVGAKGAVQFRSSYYKRGDVIIVPIDDNEAIIKLAIIYLYKVRPEYLKKTAYNPENF FT FADFNWERSEVEMKPFYDKSMNEYLQANKSLGCTYTEEDIKAQYPNANEIRLLSLYRVC FT NSQGKFIDEKELDAGSIKGFEITTKAEDGGIGEGISQNALFIKCVDIFKRFLEFNNTKA FT GKAKIDVNKRILNIFLDSVTSKTDLSNLRDNPLIVAFFMNAYDKLTTTSKGFQDNFLAI FT QKLTPDFKKFVREVFLIDCKVDEERIYFKLPKESVVEVLADPSILSNYIMKEMSVACES FT NCNTLPREVDGFATDAILSFLRPVSRGSDMEILDGLLFILGKHTTNIKRLTLHKEVGAE FT FGNMMTRFYMDDLNTFVTNRVVGKYREFVGKNVLRLWANERAARAMNLYKTANFNPGLF FT SYVPGILPYMRFDFFKQIPLRYMSEEEVTSFTTLRRLTESHSERSDEANSDCIRWIVRS FT L" FT CDS 4305..4559 FT /codon_start=1 FT /product="p10" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:E7BKK1" FT /protein_id="ADU25037.1" FT /translation="MDSEEFVKDYSLERINDFLKLYNSFGNTNPSITDVLLGVINDNFL FT SFRNIKSDFVVPKEELLDFLKLTDLVRQLLFSVNKDVRR" FT CDS 4546..5301 FT /codon_start=1 FT /product="CP" FT /note="ORF6, p28" FT /db_xref="GOA:E7BKK2" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E7BKK2" FT /protein_id="ADU25038.1" FT /translation="MSGGDDNQNSVPQLPNDVNERQVNADDGSANVSRRDDTINSMLKN FT ITRRDDITSQETYDPEMFKNIKVSAERGDTLNDEQNTKFNLKMKDFCGTVVKMGVDETS FT LLAFFCSLILAMKNQSTSTKNSKQIHLINTFTHNGTTFTWRTADFITFMKSNFPEVPNP FT IRRYLKRNEDVVARISAAAKLDSDGHLAAKHGTTAQYWNSTADFLNGCKTNISDDDLAA FT NYLQRQAATRMNKKNRQIYNVNQLAADFN" FT CDS 5270..7294 FT /codon_start=1 FT /product="p77" FT /note="ORF7, CPm" FT /db_xref="UniProtKB/TrEMBL:E7BKK3" FT /protein_id="ADU25039.1" FT /translation="MSINSQQTSIEYTPEFDGDDEDQNLSGRASKLTFNQTFSFVGVDF FT KELTFAVPYNDNVYRSATSFYVRINLKRGYVLYSCNFKDNANQSIKEINTGFWQSAYTI FT IEKPRQLKWNGDNSFSILKTSNGWEIKIKGWKCYLIKESFLPISLDLLLSIPLDGFMIS FT KEKSYVSKFIDPSSIIKDCKVDGNYFDKWKIDVEIINSIQKFSSKILTNIALSLGSFNN FT IEDLDIREKEVDKSISLDDVKPTDIVEDVRDVVRIYHTTSMSSVSCKRFSLLGRVSSVS FT HSNIRTIFQIWYGDSKNMLELLIDNSEKHKSNDVFRIFYTKDGKGKYQSNLDRVLTDVP FT LSDGYKVYEIVLDFKNNDVIDVTAQRKFLYSLRLPIQTKFIRCGFEIQILDLNTKLFNT FT SNLKRIVGFGNIEKIIIDGSVANFTIDNIPLSNLNVGAKDIKSKVEVALSNVKEVKDLF FT LPLPLPAESTPTEVVPVEPSRNNNEVKTDGDDIGGFKLNKNFISIRSSVLGKDTEDRLF FT NQMVEYYVRLGFPEDQAEFIIYQFAVSFCTSKNSTTDRKNFIHWRNKDGAIRILSKGKH FT SRLFQSLTNFPCNVERTVLAGRSDKILKLLRDRQLLWPYKNAEKRGIKPEFAYMACDFL FT KVDKAVLSEEEQLAITSQRMYVNLSNKHKRSIVSVNQIA" FT CDS 7297..8013 FT /codon_start=1 FT /product="p28" FT /note="ORF8" FT /db_xref="UniProtKB/TrEMBL:E7BKK4" FT /protein_id="ADU25040.1" FT /translation="MTSNVFDLTLPSDDQVRDQDISRSSTMTNDRIASNINQVLNVTND FT FKRYTVAELEHNLLCCEALMTYAALNTFDVSLFSENSSTFKVLRDSGHDEEEIKQNKQF FT YFPVLNDFDVKTIMYDISKVLKFLIRYKMGYFENFDINTIFAYYHVNNFQRINFAIKDM FT TLTDMQVNDQVDAVFYLDVDNSYWLKTLLKKCANFSKTGEEKRLILKTYINEHLKFKFA FT FRYNISSFKIPEVSNK" FT 3'UTR 8014..8220 XX SQ Sequence 8220 BP; 2763 A; 1246 C; 1555 G; 2656 T; 0 other; gaaaaattcg gttacgactt gatttttcca cgaggctaag gctgcggccg atcgtctcaa 60 agaacaactt ttgtcggagt tggaaaacac cgactcgtca acgcatctct gatgtcttga 120 catcccctcg catgagagtg tgaggtcttc ttctttttct gtttttcctt tttctttttc 180 tttatatata tcacgcctat tatataaaca caatatagca tagacttgat acatatagca 240 aaactacatt ccttgcctct accctaaact cgtctagcgc acgttacaac gcacaggcaa 300 cccacagcaa tttcggcggt taatttaagg aggactgctg aaagatgagc ggctaatagc 360 acctcatcgc gcggggcccg tccaggccct ctcttcagga aactgggcac ctcctcttct 420 atcgtaaagt gggatcatat accccctttc tatgattttt gaagtggatt ttgtatatga 480 tactcttagt taatgaaaaa tttttagaaa attttattag tattattagt atcatctcct 540 tataatcaac attagcattt tcaacgtggt gaaaagaaaa attttactgg aaatgtgatc 600 ttcgctttgt cgttgatcta tgttgattag tttgtaagag aaatctttaa aaatacagaa 660 gattgtatta attgttcctg ggatttttcc ctttgataac aaatactttc tttgtaaaga 720 atttgggata aagtacgtct tattcttgaa agagtttaag aagtggaaac cgtaataggt 780 ttagaattta tttattagat cccatttcga ataattatgt tgatgctttg ttaattttct 840 aatttcatca ataactgtgt tcgttatgaa tacagacatt ttgataagtt gtttagaaaa 900 gtttaacatc aacaaaaatt ttagttttga aaattatgga agccaaggtc ggtttagatt 960 ttggtacaac attcagtact atctcaagtt atgttaatgg agttatgcat gtactgaaga 1020 ttaataactc tgagtatgtt cctacatgtt tggcaataac gtcatcaaat gacgtcatca 1080 taggaggagc tgcccaagtt ttagattcat cggaagtatc taactgttac ttctatgatc 1140 taaagagatg ggtcggagtt gataggatta actttgaaat catcaggaga aaaattaggc 1200 ctcaatatgt tgccgaattg atagataatg atgtttatct tactggcata aataggggtt 1260 tttcctgtag atacacggtg aaacagttga tccttttata tatagagaca atggttaggt 1320 tattctcaaa gactgacaat ttgaatattg ttagtcttaa tgtctctgta cctgcggatt 1380 ataagtgtaa acagcgcatg ttcatgaaat ccgtatgtga ttcgttaaat ttttctttga 1440 ggaggataat taacgaacct tccgctgccg ctatctattc ggtatcgaaa tatccaaagt 1500 tcaagtactt cctaatgtat gattttggtg gagggacttt cgatacttca ttgattgtta 1560 gagacggcaa agttgttacc gtggctgata ctgaaggaga ttcgtttctt ggtggtaggg 1620 atattgataa tgcaatatca agatacatca tgaagaaaca ctcacttaaa atacctctgt 1680 cttcagattt ccttgcatct atcaaggaag aagtgaacaa ttcggataaa tccaatttca 1740 ctgcttccga tgtacaaggg aatatagtta atgttaattt cactaaaacg gaccttagta 1800 attgcataga aagttttagt gatagaagca taagaattct agacaatctt gtttctagaa 1860 ggaaattaac ggaaggtgct ttatttatgg taggcgggtc gtctttgttg aaaaagattc 1920 aacaagacgt gacaaggtat gccaatagta aagggttgca atgtgtaata gacaaggact 1980 taagatcatc agtgtcttat ggctgttcta tgcaacatgc tcaagaggat tcaggttcta 2040 tgacttacat agattgtaat tctcaccctt taatggattt gtatatgtat acaaatccta 2100 aggtcatagt caccaaacct atgccaatac cctatacgaa atacgaccct aggatggtca 2160 cttcacattt caatactatt gttaatgttt atgaaggatc agacctcttc gtacttaata 2220 acgattggtt ggtcagtgcc aaacttgaca ctcggaacca tgtcaaaatt ggtgagactc 2280 ttacctttgt ttataagtat agtatagatg gtatattgta tctatatgcg aagaacgagg 2340 atactaaggt cgaaaaatta cttccgaaca cattctcatt aactgaaaaa attaagaaat 2400 tggatttaca gctaacccaa ttatcaacaa ttgatgagtc agcaacacta ctatcaatta 2460 taagttattt tgatagtaag tataaaacat atcttaacta tcttaagact ccaactattc 2520 tggagaagga gttagctaaa gcaacctctc tgaaagcctt atattccgaa ttagtaaaat 2580 ttaacaaaaa ttttaattct ggtaaataat ggctttagtg gttttacttc ttttggagat 2640 gtttggtggt ttcaacagtt attacctatc tgataactca agtttctcag gccaaatctt 2700 agtgataagg actgaagatc cgaaattgtt aacagatata ctgttggagt taccttacat 2760 taaggaaaga tggtagacat attttcaaat cagtcggtta aaagattttt atctttcttt 2820 tttaaaaaga cggatattaa tgaagagtta aaagctatca ataagtattt ggtagctaat 2880 tatgtgactg agaataataa cttatataga acagtcggtg ctaagggggc tgttcaattt 2940 aggagtagtt attataaaag aggggatgtt attatagttc ctattgatga taatgaagct 3000 ataattaaat tagcaataat ttatttgtat aaggttcgac ctgagtacct taagaaaact 3060 gcgtataatc cagaaaactt tttcgcagat ttcaactggg agaggtctga agttgagatg 3120 aaacctttct acgataagtc tatgaatgaa tatctgcaag ctaataagtc tctaggttgt 3180 acttacaccg aagaggacat aaaggctcaa taccctaatg caaatgagat aaggctgttg 3240 tcactttatc gggtttgcaa ttctcaaggg aaatttatag atgaaaaaga gttagatgca 3300 ggcagtatta agggattcga gataacaacc aaggccgaag atgggggcat tggtgaaggt 3360 atatcacaaa acgcattatt tatcaaatgt gtcgatatat ttaaaagatt tctcgaattc 3420 aataacacca aagcaggaaa ggcaaaaatt gacgttaata agagaatatt gaatatattc 3480 ttagattctg tgacgtcaaa aactgacctg tcaaatctca gagacaaccc actcatagtt 3540 gcatttttta tgaatgcata tgataaattg actactacat ctaaaggttt ccaagataat 3600 ttcttggcca ttcagaaatt aactcctgat tttaagaagt ttgtcaggga agtttttctg 3660 attgattgta aagttgacga ggaaaggatt tattttaagt taccgaaaga gtctgttgtg 3720 gaggtattag cggacccatc tatattaagc aattacatca tgaaggagat gagtgttgca 3780 tgtgaaagca attgcaacac acttcctaga gaagttgatg gttttgctac agatgctata 3840 ttgtcgtttc tgcgacctgt atctagagga tctgacatgg aaattctgga cggactgctt 3900 ttcatacttg gaaaacatac taccaatatc aaacgactta ctcttcataa agaggtaggt 3960 gctgagtttg gtaatatgat gacacgattc tatatggatg atttgaacac attcgtaact 4020 aatagagttg tgggtaagta tagagagttt gtcggtaaga atgttttaag actttgggct 4080 aatgaaagag cggctagagc aatgaatctc tataaaaccg caaatttcaa tcctgggttg 4140 ttctcctacg ttcctggtat tctaccttat atgagatttg atttcttcaa gcaaatacca 4200 ttgaggtata tgtcagaaga agaagtcacg tctttcacta cacttcgtcg tttaaccgaa 4260 tctcattcag agagatcgga cgaggcgaat agtgattgta taagatggat agtgaggagt 4320 ttgtgaaaga ttatagtctt gagagaatta atgatttctt aaaactttat aattcttttg 4380 gtaatacaaa tccgtctata acagacgttt tgttgggagt gatcaacgac aacttcctaa 4440 gctttcgaaa tattaaaagc gattttgtcg tacccaaaga agaattgtta gatttcttaa 4500 agttaacaga tttggtaaga caactactat tttctgtaaa taaagatgtc aggcggtgat 4560 gataaccaaa actctgttcc tcaattaccg aatgatgtta atgaacgtca ggtgaatgcc 4620 gatgatggtt ctgcaaatgt ttctagaagg gatgatacta tcaattctat gttgaaaaat 4680 ataactagga gagatgatat taccagtcaa gaaacgtatg acccagaaat gtttaaaaat 4740 ataaaagttt ctgccgaaag aggtgacacg ttaaatgatg aacagaacac aaaattcaat 4800 ttaaaaatga aagatttctg cggcaccgtt gtaaaaatgg gggttgatga aacttctctt 4860 ctggctttct tttgctcgtt aattttagcg atgaaaaacc agtcgacatc aacaaagaac 4920 agtaagcaaa ttcatttaat caatactttc acgcacaatg ggactacttt cacttggaga 4980 acagccgatt tcattacttt tatgaaatca aactttcctg aagtgccaaa tcccatcaga 5040 aggtatttga aaagaaatga agatgtggta gcaagaataa gcgcggccgc aaaactagat 5100 tccgatggtc atctagcggc gaagcatggt accactgctc agtactggaa ttcaacagct 5160 gatttcttga atggttgcaa aacgaatatc agtgatgatg atctagccgc taattacctt 5220 cagaggcaag ctgcgacaag gatgaataag aaaaatagac agatttataa tgtcaatcaa 5280 ctcgcagcag acttcaattg agtacacacc tgagtttgac ggtgatgatg aagatcagaa 5340 tttgtcaggt agagcttcaa aactgacctt caatcaaacg ttctctttcg ttggtgttga 5400 ctttaaagaa ttaactttcg ctgtacctta taatgataat gtgtacagat ctgcaacttc 5460 cttttacgtt agaataaatc tgaagagggg ttatgttctt tatagttgta attttaaaga 5520 taatgccaat cagtctatta aagaaattaa tactggtttt tggcaatctg cttatacaat 5580 aatagaaaaa cccagacaat tgaaatggaa tggagacaat tccttttcaa tattaaaaac 5640 atctaatgga tgggagatta agattaaggg ttggaaatgt tatttaatta aagaatcttt 5700 ccttcctata tctttagact tacttctctc tataccactt gatggattta tgattagtaa 5760 agaaaaatcc tatgttagta agtttataga tcccagttca ataattaagg attgtaaagt 5820 ggacgggaac tactttgata aatggaaaat cgatgtagag ataataaatt caatacaaaa 5880 attttcttca aaaattttaa ctaatatagc tctttctcta ggatctttta ataatataga 5940 agatctagat ataagagaaa aagaagttga caaatccatt tctttggatg atgtgaagcc 6000 gacagatata gtggaagatg ttcgcgatgt ggtacgaatt taccacacca cctctatgtc 6060 ttctgttagt tgtaaaagat tttctttgtt gggcagggtt tctagtgtat ctcatagtaa 6120 cattagaacc atttttcaaa tctggtatgg ggatagtaag aatatgttag aacttcttat 6180 agacaattct gaaaaacaca aaagtaatga tgtttttaga attttctata ctaaagacgg 6240 gaaaggaaaa tatcaatcca atcttgatag agttcttact gacgttcctt tatctgatgg 6300 ttacaaggtt tacgaaattg ttcttgattt taagaataat gatgtaatag atgtaacagc 6360 tcaacgtaaa tttttatatt ctttaagatt acctattcaa actaaattta taagatgtgg 6420 ttttgaaatt caaattcttg atttgaatac aaaattgttc aacacatcta atttaaagag 6480 aattgttgga tttggtaaca tagaaaaaat aattattgat ggatcggtcg ctaatttcac 6540 catagataat attccattaa gcaatctcaa tgtgggtgct aaagatatta agtctaaagt 6600 tgaagtcgct ttaagtaacg tgaaggaagt taaagatctt ttcctcccac ttccgttacc 6660 cgctgaatca actccgacag aagttgtccc agtagaacca agcagaaata acaatgaagt 6720 taaaactgat ggtgatgata ttgggggttt taaactcaac aaaaatttta tttccattag 6780 aagttccgtc ctgggtaaag atactgagga taggttgttt aatcagatgg tcgaatatta 6840 tgttcgtctc ggttttccag aagatcaggc tgaatttata atatatcaat ttgcagtatc 6900 cttttgtacg tcaaagaata gcaccactga caggaaaaac tttatacatt ggagaaataa 6960 ggatggagct attagaatct taagtaaagg aaaacattcc cgactttttc aaagccttac 7020 taatttccct tgtaatgttg agagaacagt attggctgga aggagtgata agattttaaa 7080 attattgaga gacagacaat tactatggcc atataaaaat gcagaaaaaa gaggtatcaa 7140 acctgaattt gcatatatgg cttgtgattt tttgaaagtt gataaggccg tgcttagtga 7200 ggaagaacaa ttagccatca catctcaaag aatgtatgtc aatctctcta acaaacacaa 7260 acgttcgata gtgagtgtga atcaaatagc gtaaaaatga cgtcgaacgt ttttgatctc 7320 actctaccaa gcgatgatca agtaagagat caggacatat caaggagttc cactatgacg 7380 aatgatagaa ttgctagtaa catcaatcaa gtattgaatg tgactaatga ttttaaacgt 7440 tatactgtcg cagagttaga gcataatttg ctatgttgtg aggctttaat gacttatgca 7500 gccttaaaca cttttgatgt ttctctgttc agtgagaatt catctacttt caaagttttg 7560 agagattctg gtcatgatga agaagaaatt aagcagaata aacaattcta ctttcctgtt 7620 ctcaatgact ttgatgtaaa aacaataatg tacgatatat caaaagtctt aaaatttctc 7680 ataaggtaca aaatgggtta ttttgaaaat tttgatatta atacaatatt tgcatactat 7740 cacgtgaata acttccaaag aatcaacttt gctataaaag acatgacttt aaccgacatg 7800 caggttaatg atcaagtgga tgctgtcttt tatttagatg ttgataatag ttattggttg 7860 aaaactttgc ttaagaagtg tgcaaatttt tcgaaaactg gagaagagaa aaggttaatt 7920 ttgaaaactt atatcaatga acatttgaaa ttcaaattcg cctttagata taatatctct 7980 tctttcaaaa ttcctgaagt ttcaaataaa tgaaacaaat taaaatatat aagtggctat 8040 ttaatgtaaa tgtcttgtag ccatgggtca tacacgtatg ggatgtatag tgtgtattat 8100 aaaaacccga aataaacgat aaacataaca ttggcatgtc ttaagactta atgttatgtc 8160 tggtatcaaa agtgtggact agccaccgcc ttgataccta gtttataaat agattaggcg 8220 //