ID GQ370764; SV 1; linear; genomic RNA; STD; VRL; 3403 BP. XX AC GQ370764; XX DT 28-JAN-2011 (Rel. 107, Created) DT 28-JAN-2011 (Rel. 107, Last updated, Version 1) XX DE Watermelon bud necrosis virus isolate WM22 segment S, complete sequence. XX KW . XX OS Watermelon bud necrosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-3403 RA Laxmi Devi V., Usha Rani T.R., Jalali S., Krishnareddy M.; RT "Molecular Characterization of S RNA of Watermelon Bud Necrosis Virus RT Infecting Watermelon"; RL Unpublished. XX RN [2] RP 1-3403 RA Laxmi Devi V., Usha Rani T.R., Jalali S., Krishnareddy M.; RT ; RL Submitted (08-JUL-2009) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; 66be3f67250324774d21d40e556c3aa3. XX FH Key Location/Qualifiers FH FT source 1..3403 FT /organism="Watermelon bud necrosis virus" FT /segment="S" FT /host="watermelon cultivar Arka Manik" FT /lab_host="cowpea" FT /isolate="WM22" FT /serotype="Nil" FT /mol_type="genomic RNA" FT /country="India:Hessaraghatta, Bangalore" FT /collected_by="M. Krishnareddy" FT /collection_date="May-2008" FT /note="serogroup: WSMoV" FT /db_xref="taxon:76052" FT 5'UTR 1..66 FT gene 67..1386 FT /gene="NSs" FT CDS 67..1386 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /note="gene silencing supressor" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:E9JEC6" FT /protein_id="ADB19863.1" FT /translation="MSTALSVASEFVISYVTGDDVPPDDCCSIFSGEGANFLDLFMHNI FT AGMKSAFNISYLYLNDDITIHEPEDIESCHDYHYFEKFGLDITFCEHEMSLIVRKPGVK FT NTGCKFAMHNQTFNPNSDVLDLAPRTISEDIFYEKSKIRPSGMAPSGWCLDECRENNFY FT IAANGKLALDYGFSVMGKTTSYWRENMSREKILSVKQKSLPDNTVPTNRLLSTSTVKGI FT QLGSELASDTTVILSLKQNLNTNLKSQYPNSFHGIPEEGAFTRTFCVLFENKSRMICMY FT AKTVADNSNERTTIIIKVATKTVDFHLVIPIRNHINCMRKIGARIGLVDLCDADPNYNQ FT MIVKELLSVHTQFAIKLSEVVGKPIIVFKMYDKELSNNHVDVFGRILNYQTDTEGNIYF FT LSKTLEVLPKSLSTLSYLGSIAPIQWIECLEHQHFVVIAN" FT misc_feature 565..576 FT /gene="NSs" FT /note="potential N-glycosylation site" FT gene complement(2509..3336) FT /gene="N" FT CDS complement(2509..3336) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /note="NP" FT /db_xref="GOA:E9JEC7" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:E9JEC7" FT /protein_id="ADB19864.1" FT /translation="MSNVKHLTDKKIKDLLAGGAADIEIETEDATPGFSFKSFYDNNKD FT VEITFTTCLNILKCRKQIFTACKNGKYNFCGKNIVATTAQVGPDDWTFKRTEAFIRTKM FT VSMVEKSTNENAKQEMYTKIMELPLVAAYGLNVPAAYDSCALRMMLCIGGPLPLLSSVK FT GLAPVIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKGELDNKFKSAVEL FT LSKSNPGTASSISLKKYDDQVKHMDRVFNASLSMDDYGEHSKKSSKASTSLEV" FT misc_feature complement(3202..3213) FT /gene="N" FT /note="potential N-glycosylation site" FT 3'UTR 3337..3403 FT repeat_region 3394..3403 FT /rpt_type=INVERTED XX SQ Sequence 3403 BP; 1084 A; 600 C; 591 G; 1128 T; 0 other; agagcaatcg aggcttctaa taattctaga aaaacaacga taagatcaag aaatactaat 60 tcaggcatgt ctactgcgct gagtgttgct tctgagtttg tcataagtta tgtgacggga 120 gacgacgtac cacccgatga ttgctgttct attttctctg gagaaggcgc caactttctc 180 gatttgttca tgcataacat cgcgggcatg aaatctgcat tcaacatcag ctatttgtac 240 ttgaatgatg atatcacaat ccatgaacct gaggatattg agtcttgcca tgattatcat 300 tacttcgaaa aatttggtct agacattact ttttgcgagc atgagatgag tttgatcgta 360 aggaagcctg gtgtgaagaa cacaggctgc aaattcgcaa tgcataacca aaccttcaac 420 cctaactctg atgtattaga tttggcacca cgaacaattt cagaagacat cttttatgaa 480 aaaagtaaga taagacccag tggtatggct ccttccggct ggtgtttaga tgaatgccgg 540 gaaaataact tttacatagc tgctaacgga aaactggctc ttgattatgg tttctctgtc 600 atgggcaaaa caacatctta ttggagagaa aacatgtcaa gagagaagat cctgtcagtg 660 aagcagaaat ctcttcctga taacactgtt ccaaccaaca ggctgctgtc tacctcaaca 720 gtcaaaggaa ttcagctagg ttcggaactg gcatctgata ccacggtcat attgtctttg 780 aagcagaacc tgaacactaa cttgaaatca caatacccga attcattcca tggaatccca 840 gaagaaggag cttttacaag gactttctgt gtcctttttg aaaataaatc aaggatgatc 900 tgtatgtatg caaaaactgt tgcggataac agcaatgaga gaaccactat aataataaaa 960 gtggcgacaa aaactgttga ttttcatctt gttatcccca tcagaaacca catcaactgc 1020 atgaggaaga ttggagccag gataggtctt gttgatttgt gtgatgctga tcccaattat 1080 aatcagatga ttgttaaaga attactatct gtccacactc agttcgctat taaattatct 1140 gaagtggttg ggaaacctat aatagtgttt aaaatgtatg ataaagagct gagcaataat 1200 catgtggatg tttttggaag gattttaaat taccagacag atacagaagg aaatatttat 1260 ttcctctcga aaacccttga agttctccct aaatcacttt caactttaag ttatctgggg 1320 agtattgctc caattcaatg gatagaatgc ttggagcacc agcattttgt tgtgattgct 1380 aactgattta ctaaataacc tagttccagc agacgatttc tatcttaatg ttttataaat 1440 aattaagtcc ttccttatca aaataatatt aagttttaag ttcaatatat gtttgaatat 1500 ttaaatgttt atcatagttt attagattaa agctagtatt aataagttgt gtagcatgaa 1560 tatgtttaat atgagtgtaa acctatgaaa gttaataaag aaaacccaaa aaaatcaaaa 1620 aacaaaaaac caaaaaagac ctcaaaaggg gcaaacttgg cttttttatt ccaagtgatc 1680 ctaacctggt tttaataacc ttgtttattt gagctgctgg cttgaagtgt tacgggtgca 1740 acgtgctgtt tgagcttatc caagattaac aaaggaaagt tctgtcccca tgtttattag 1800 ctaaagcaaa ctgacagaca caaccactag atggttcagt aaaattagat atagcagatc 1860 gatttataca gatctaaatt gtcatccatt ttacattaca cctaatatgc tgatcataac 1920 ttatgcagat ccttaaagtt ctaattaaaa tgttcaaaat gccaactttt gttcaaattt 1980 gagtctttca aactggtttc taagaatata atcagcttta agctactgga tacatagaag 2040 tttggttatt ttacatagct ggtgctaatg tctggtatac aatatctgta aatagtggcc 2100 attatttgcc ccaaaagagg ctttttttgg atttttttgg ttttttgatt tttttggttt 2160 ttatttgttt tttgattttt ttggattttt gaattttgat tttatttatc ttgtttatgt 2220 aaaatattct atttatatat ttatctttaa aacacacatt agcacaccga catagcaaat 2280 agcttacata ttaaattcag tttaatatta gtggaaacac acaaataaac taatagtaca 2340 cacaaacttt ttaaataaga cttttaatag ttaataatat gtttaactta atattaatgt 2400 aaacacatga ataaactaat gacacacaca aacagtttta aattatctgt ttaatagtag 2460 gtaaatacat tcatacataa atatttatat gcaacttggt gttttaaatc acacttccaa 2520 agaagtgctg gcctttgagc tctttttaga gtgctcaccg tagtcatcca tagaaagact 2580 agcattgaag actctatcca tgtgtttgac ttgatcgtcg tatttcttca gagagattga 2640 actggctgtt cccgggttac tcttgctgag caactcaaca gctgatttga acttgttatc 2700 caattcgccc ttaaactcaa tttgtgaggc agaaagaact ttagctactt tgcacacctg 2760 ttcataagta gagaagtttt taatgcctaa cttctctttc tttacatttt ggtaataagc 2820 taaagggaat ataactggtg ccagcccttt cacgctagat aggagaggta aaggacctcc 2880 aatacacaac atcattctta aagcacacga atcataagct gcaggaacat tcaagccgta 2940 agctgccacc aatggcagtt ccattatttt cgtgtacatc tcttgcttgg cattttcatt 3000 agtacttttc tccaccatac taaccatttt tgttctgata aaagcttctg tccttttaaa 3060 agtccaatca tcagggccta cttgagcagt tgttgcaaca atattttttc cacagaaatt 3120 atatttccca ttcttgcaag cagtaaagat ctgctttctg cacttcaaga tgtttaaaca 3180 ggttgtgaaa gtgatttcaa catccttatt attatcataa aaagatttaa aactgaaccc 3240 aggtgttgca tcttcggttt caatttcaat gtcagcggca ccaccagcca acaagtcttt 3300 gattttcttg tcggtgagat gcttaacgtt agacatggtg tttactctgg aaacgtctaa 3360 tgtgatgact ttgtttggat tttattagtg cctcgattgc tct 3403 //