ID GQ369528; SV 1; linear; genomic RNA; STD; VRL; 7384 BP. XX AC GQ369528; XX DT 01-AUG-2012 (Rel. 113, Created) DT 01-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Arabis mosaic virus isolate ba segment RNA1-III, complete sequence. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7384 RA Marmonier A., Vigne E., Komar V., Demangeat G., Besse S., Gugerli P., RA Lemaire O.; RT "Comparisons of genomic and pathological features among barley and RT grapevine infecting-isolates of Arabis mosaic virus"; RL Unpublished. XX RN [2] RP 1-7384 RA Marmonier A., Vigne E., Lemaire O.; RT ; RL Submitted (09-JUL-2009) to the INSDC. RL UMR 1131, INRA, 28 rue de Herrlisheim, Colmar, 68 68000, France XX DR MD5; 8ab8921a46aefbcb5f0403ea4dfaf72f. XX CC GenBank Accession Numbers GQ369526-GQ369530 represent sequences CC from the 5 segments of Arabis mosaic virus isolate ba. XX FH Key Location/Qualifiers FH FT source 1..7384 FT /organism="Arabis mosaic virus" FT /segment="RNA1-III" FT /host="winter barley cultivar Express" FT /isolate="ba" FT /mol_type="genomic RNA" FT /country="Switzerland" FT /collection_date="1991" FT /note="identical sequence found in winter barley cultivar FT Mannitou" FT /db_xref="taxon:12271" FT CDS 229..7086 FT /codon_start=1 FT /product="polyprotein P1-III" FT /db_xref="GOA:I6LL57" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:I6LL57" FT /protein_id="ADJ39331.1" FT /translation="MWQISEGSQCCCTGKSWSNAEAKEARYVCNCLYNCRLVKVEVTPQ FT PPKSRIAPAQQKKERIAPLQNSNGRMALTTPKSKRAYVPDAPLVKQRCDVVVRVGPPAS FT LELIYPALVQEEVATPPTKKVLQPTTKADVRVPVCCAPKWMVAIPKPPVKTAPRVEQTQ FT FPKGAVCYNGTNFLDAAGKVVLSEGAKRILKGIRVAKQQRQRAARRSAACKKIRKARAL FT ALYKRLSEERTFQELPGGFAGEIPAGFFSYGKTVASPIATPKKVVSKRKRVSKPSTIAV FT PVQDFSCIDAFDWREKSLPVEEAIEDDWVLVEKPVLKRQAAHSAQGRATEALTRFAASS FT GFTVKAHQKVEELAAIDAASHLIAGEFADLCLRSLVYNDAPTLSASIEELACTQDFRDA FT IELFNIELAELPTDSTTCGRFSDWAASAKSMAKGVGSLVGDLARGAGAGALITFDKCIE FT YLQEKALTLCQKVFNATMAPYMSHLTEASNIIKQIWKKLSEWMESLKGKAGLALEVLAH FT HAIFALGAIVVGGVVVLVERVLVYCKVIPCCGIVLGAFLTLFFASLGLTALECTADEIF FT KMHQCCKGAIYSMYSVKEPVCEGEGDSTTKGVLQGLDNAISALTRVGQSMISFKLGSFS FT YYAKIAQGFDQLARGKRAIGELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSW FT LLKSKRVRLQVETMAIGDRITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVS FT KLEEVHQRTACAGINEGMRQFPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVY FT SRPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMAM FT DSPLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLH FT NKCAYIDSEGVPQGPAVNTPMEEGWVSPSEAVATLKNLLGEHVLAEEEKLLDYRERIGN FT DHPIYNAAQEFIGNMHYPGQWLTTEQKNTYGINEEGFSFLAVDGKMYKYNVLGKLNPCA FT TEPPHPNVIPWLEEKTLTMVHWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVELMGK FT DSSPEQQAFFKRLSLSERIYLRLCQIRIDAIKKEQLSGPSRGTLDVLRECMAKSKAKLA FT ENYSLLLTLVAVLVLIATAYSLISTLVGLSGCASFAGGMVAMKDVRNASIPCSEPRLEE FT RYSARNRFVSRISRARGDGPAKGQGEHEELVTELYYYFDGVKRLISCCWFKGRSLLMTR FT HQALAIPVGNEVQVIYADGTDRKLVWPGKQENGSCKGYIEFPENELVVFEHVRLLTMPV FT KYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKYASARSDVHTVVDEGGSAVY FT QNKIRRHIIYAHEAKRNDCGAIAVAEIQRVPKVIAMLVSGTGNVSYSSVIPNYSSSFVR FT GDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSKTAFMKVPDEICFPYPNPKQPAILSEE FT DVRLKGTVHEGYTPTRDGMKKFAEPMHLLDEKLLDEVAGDMVQTWFDVGEFLEDVPLNV FT AINGDVDEEYFDPMAMDTSEGYPEVLQRKAGEKGKARFFVGEPGAREFVPGCGPEKAYL FT SLEEECKTRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLL FT MKKRSHLPCQVGINPYSREWTDLYHRLAEMSDVGYNCDYKGFDGLITEQILAVVATMIN FT AGYQNPVANQQRSNLLLAISGRLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYC FT FKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANLGVTITDGKD FT KSLATIPARPLLELEFLKRGFKKGNGGMIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDN FT VNSALVELFLHQDREYSESVRNFYLEKLPPGSYKELTTWYQAQAFHECQLSGESNWKPQ FT GLIEISHGAGFASFVQQDGTELERHDICPGLAISGARYIAKNEEILMSLSSLLPGDVNA FT TKLELKCGDGIGRLPSKASVLAQRKPGIVMRLCKQALDEKKTLVIRDERPYIGGWAMAC FT ICGESFGFSIRDTLALYANLLGPKRKNGLAEYFSNFESPVHVKKVHAITNGEEGAAMLK FT EVFTFCEPKICAATSCDTRREMLAHPPELFPNIVLIGGVSFPKEGGEPGALYSHTDIVM FT SKKTKGVYVSEAILKCCLRCPGVTTKTVLQTSTIGSSLSKAHLKSLRQLQTHQCVRR" XX SQ Sequence 7384 BP; 1992 A; 1462 C; 1835 G; 2095 T; 0 other; atgaaaactt tctgtgagtt ctatattaaa ggcgatcccc tttaatctca taaccaagag 60 tttaagaaac tcaaactttc atagtcaatc cgttaagagc ggaaacaaag ccaaaccgtt 120 aagagcggta ctaaaagaag agtttaagaa actcattgct ttatttttca tttcatttac 180 gctgtatttg tttagttttt gttttgttta attaaagctt gcgccacaat gtggcaaatt 240 tctgaaggct cccagtgctg ttgcactggg aagtcctggt ctaatgccga ggccaaagag 300 gctcggtatg tctgcaattg tctttacaat tgcaggcttg ttaaagttga ggtaacgcct 360 cagcccccga agagtaggat agcgcctgct caacaaaaga aggagaggat agcgcctctt 420 caaaactcga atggtaggat ggcgcttacc acccctaaat ccaaaagggc ttacgtgccc 480 gacgcacctt tggttaaaca gaggtgtgat gttgttgtta gggttggccc gccggctagc 540 ctagagttga tataccctgc cttagtgcag gaagaggtgg caaccccacc tactaaaaag 600 gtcctgcagc ctaccacaaa ggctgatgtt agggtgccag tttgctgtgc acctaaatgg 660 atggtggcta tccccaagcc accggttaaa actgctccca gagtggagca aacacagttc 720 cctaagggag ctgtgtgtta taacggcacc aactttttgg atgccgcggg gaaagtcgtc 780 ctatctgagg gcgcaaagag gattctcaag ggaatccgcg ttgctaagca gcaacgtcaa 840 agggctgcac gtagatctgc tgcgtgcaag aaaattcgca aggccagggc tctggctttg 900 tataagcgct tgtctgaaga gcgcaccttc caggagctgc ctggaggatt tgcgggtgaa 960 attcctgctg gtttctttag ctacggtaaa accgtagctt ctcccattgc cacccctaaa 1020 aaggtggttt ccaaaagaaa gagggtgtca aagccctcta ctattgctgt tccagtgcag 1080 gacttttcct gcattgatgc ctttgactgg agggagaaat ccctaccagt cgaagaagcc 1140 attgaggacg attgggtcct cgtggaaaaa cctgttctga aaaggcaggc tgcgcattct 1200 gcgcagggga gggcgactga agcccttaca agatttgccg cctcaagcgg ctttactgtc 1260 aaagcccacc aaaaggtgga ggagttggct gctattgatg cggctagcca cttgattgca 1320 ggggaatttg cggacctctg cttaagatct ttggtgtata atgatgcacc aactttatcc 1380 gcctctattg aagagcttgc ttgtacgcaa gactttagag atgctattga gctcttcaat 1440 attgaacttg ctgaattgcc aacggattcc actacgtgtg gacgttttag tgactgggct 1500 gcttctgcca aaagcatggc aaaaggagtt ggttctctag ttggcgatct tgctcgaggt 1560 gctggggccg gtgcacttat cacttttgat aagtgcattg agtatttaca agagaaagca 1620 ttaacgcttt gtcaaaaagt gttcaatgcc actatggccc cctacatgag tcatctcact 1680 gaagcttcta atattataaa gcaaatttgg aagaagctca gtgagtggat ggaaagctta 1740 aagggtaaag ctggattggc tttggaagtg cttgcacacc atgccatttt tgcccttgga 1800 gctattgttg tgggaggggt tgttgtcctt gtcgagaggg tactagtata ctgtaaagtt 1860 attccttgct gcggaattgt gctaggtgcc tttttgactc tcttctttgc tagtcttgga 1920 ttgactgctc tggaatgtac cgctgatgaa atttttaaga tgcatcagtg ctgtaaaggt 1980 gctatttata gcatgtactc agtgaaggag cctgtgtgcg aaggcgaagg agactccaca 2040 acaaaaggag ttttacaggg gctagacaac gctatatctg ccctgacgag agttgggcaa 2100 agtatgatta gcttcaaact tgggagtttc tcatattatg ccaagatagc acaagggttc 2160 gatcaacttg ctcgaggtaa aagagctata ggtgaactta ctagttggct catcgatctt 2220 gtaggaagtg tttactctaa agtctcagga caggagagca ctttctttga tgagttatcc 2280 acaatagttt gccttgacgt caggtcatgg ttgctgaaaa gcaaacgtgt aagactgcaa 2340 gttgaaacaa tggccattgg agatagaata acgcttgaca ctatctccaa attgttggaa 2400 gaaggccata aaatccttgt cactgctgct ggtgtacctc gtaaaacctc agctgatttt 2460 acgatgtgta ttaaagaaga ggtctccaag ttggaggagg tacaccaaag aaccgcctgc 2520 gccggcataa acgaaggtat gcgccaattt cctttttggg tatacatttt tggcgcttca 2580 cagtctggga agacaactat tgcaaattct gttatcattc cttctttgtt agaagaaatg 2640 aatcttccca agacttctgt atactccagg cccaagacag ggggtttttg gagtggatat 2700 gcaagacagg cgtgcgttaa agtcgatgat ttctatgcta ttgaacaaac gcctagtctt 2760 gcttcttcta tgatagatgt ggtgaattct gagccatatc ctttagacat ggcctattta 2820 catgaaaaag gcatggctat ggattcaccg cttgtcgtga caactgctaa tacggtaaag 2880 cctcctacca atgctggtat tactgatgag gcttctttct tcaaccgtcg cgctgctgtc 2940 atagaagtca gaagaaaaga taatactcac tttacacccc gtgcatacga taattgcatt 3000 gaagtgagat ttttgcacaa caagtgtgcg tatattgatt cggagggtgt tccccagggg 3060 cctgctgtca atacccccat ggaagaagga tgggtttctc caagcgaagc tgttgctacg 3120 cttaaaaatt tacttggaga gcacgttctt gctgaagaag aaaagctgct agattatcgt 3180 gaaaggattg gcaacgacca tcctatttac aatgcagctc aagaattcat aggtaatatg 3240 cattatcctg gtcagtggtt aaccactgaa caaaagaata cctatggaat caacgaagaa 3300 ggattctctt tccttgctgt tgatggaaag atgtacaagt acaacgtact tggaaagttg 3360 aatccttgtg ctacagaacc accacatccc aatgtaattc cttggctaga ggaaaaaaca 3420 ttgactatgg tacattggga tgtgcataaa cacatagcta ctggtccccg aaatgcctta 3480 gtgtcttgct ttttgcaggg ccttgtacag gaccagagcc gtgtgcagag tgtggaactc 3540 atggggaaag atagttcccc tgagcagcaa gcgtttttta aacgattgag cctatctgag 3600 aggatttacc tcaggttgtg ccaaattcga atagacgcta ttaaaaaaga acaattgagt 3660 gggccttcaa gaggaacgtt ggacgttcta agagaatgca tggccaagag taaggctaag 3720 cttgcagaga attattctct cttacttact ctggttgcag tcttggtgct gattgccacg 3780 gcctactcat tgatttccac actggttggg ctatccgggt gtgcgagttt tgcggggggt 3840 atggtagcaa tgaaagacgt tagaaatgct tccatcccgt gttcagaacc ccggctagaa 3900 gaaagatact ctgctagaaa tcgttttgtg tcgcgaattt ctagggctag aggagatggc 3960 ccagctaagg gccagggaga acatgaggaa ttggtcactg aactctatta ttattttgat 4020 ggagttaaga gattgatttc ttgttgctgg tttaaagggc gctccctttt gatgacaaga 4080 caccaagcgt tggccattcc tgtcggaaat gaagtgcaag taatttatgc tgatggcact 4140 gacaggaaac tcgtatggcc gggaaaacaa gaaaacgggt catgtaaggg gtacattgaa 4200 ttccccgaaa atgaacttgt cgtatttgag catgttaggc ttttaaccat gcccgtcaaa 4260 tacgaaaagt attttgttga tgatccggac cgccaaatct ctcccaacgt tgctgtcaag 4320 tgctgcgtgg cacggcttga ggaggggctt ccccagtttc acttctggaa taaatatgct 4380 tctgccagaa gtgatgtgca tactgttgtt gatgaagggg gaagtgcagt ttaccagaac 4440 aagatcagga ggcatattat atatgcccat gaagcaaaga ggaatgactg cggagctatt 4500 gctgttgctg aaatacagcg agttcctaag gttattgcga tgcttgtttc tggtactgga 4560 aatgtgtcct attcttctgt gattcccaac tacagctcct ctttcgttag aggagatgtg 4620 ccatatgtac cagaagatgg gattaaaact aatggatata ggaaagtggg gtatcttatg 4680 cgaaaagatg ctccgcatgt tccaagcaaa acggcattta tgaaagtgcc agatgaaatt 4740 tgctttcctt atccaaatcc gaagcagcct gccatcctta gcgaggaaga tgttcgattg 4800 aagggtactg tccacgaagg atataccccg acacgggatg gcatgaagaa attcgcagaa 4860 cccatgcacc tgcttgacga gaaattgctt gatgaagtag caggtgacat ggtacaaaca 4920 tggtttgatg ttggggagtt tcttgaagat gtccctctaa atgttgccat taatggtgat 4980 gttgacgagg agtattttga ccccatggcc atggatacgt ctgagggata tcctgaagtc 5040 cttcagcgaa aagcaggaga aaaaggcaaa gcccgattct tcgttggaga accaggtgcg 5100 cgtgaattcg tgcctgggtg tggaccagag aaagcttatt tgagtctaga agaggagtgt 5160 aaaacacgcg tcccttctct aataagcatc gaaactccaa aagacgaaag gcttaagagg 5220 tctaaaattg aaactccagg tacaaggttg ttttctgtat tgcctctggc gtacaaccta 5280 ttacttaggg taaaattttt atccttttct cgtctgctaa tgaaaaagag aagccacttg 5340 ccatgccaag taggcatcaa tccttatagt cgtgaatgga ctgacttgta ccatcgtcta 5400 gcagaaatgt cagatgttgg gtacaattgt gactataaag ggtttgatgg ccttattact 5460 gagcaaattt tggccgttgt tgcgacgatg ataaatgcag ggtatcaaaa ccctgttgct 5520 aatcagcaac gttccaatct tttgctagct ataagtggcc ggctctccat ttgtggaaac 5580 caggtttatg aaacagaagc cggtattcct tcaggatgcg cattaacagt agtcataaat 5640 tccatattta atgaactgtt aatgcggtac tgttttaaga aaattgttcc tcctgtctac 5700 cgggaatgct ttgatagatg tgttgttttg atcacctatg gtgatgacaa tgtttttact 5760 gtctcacagt ctatcatgga aagctttact ggagatgctc tgaaagccga gatggctaat 5820 ttaggagtga caattactga tggcaaggac aagagtcttg ccacgattcc agctcgccca 5880 ctgctagaat tagaattttt gaagcgtggg tttaagaaag gaaatggagg catgatttat 5940 gctcccctgg aaaaactgtc catcatgagt tcactcgtgt acattcgaag tgatgggtca 6000 gatatgctgc aaaagcttgt cgacaatgtg aatagtgctt tagtcgaatt gtttctgcac 6060 caagacaggg agtattcaga aagtgtccga aatttctatc ttgagaagct tccccctggt 6120 tcatacaagg aattgacaac gtggtatcag gcccaggcct tccatgagtg tcaactgagt 6180 ggggaaagta actggaaacc ccagggacta atagagatta gccatggtgc tggttttgcc 6240 agtttcgtcc agcaggatgg aactgagttg gaacgccatg acatttgccc tgggttggct 6300 atatctggag ctaggtatat tgccaaaaat gaagagatac tgatgtctct tagctccctt 6360 ttgccaggtg atgttaacgc gactaagctt gaactcaagt gtggagatgg tatcggtcgt 6420 ctcccttcta aagctagtgt gttagcacag aggaaacctg gaattgtaat gaggttgtgc 6480 aagcaagccc tagatgagaa aaagactctc gttattcgtg atgagaggcc ttacattgga 6540 ggatgggcca tggcttgtat ttgtggagag agttttggtt tttccattag ggacaccttg 6600 gcactttatg ccaatctctt gggtcccaaa cggaaaaatg gactggctga atatttttca 6660 aattttgaaa gtccagtcca tgtgaaaaag gttcacgcca taactaatgg agaggaagga 6720 gctgccatgt tgaaagaggt tttcactttt tgtgagccaa aaatttgtgc agctacttcg 6780 tgcgacacga ggagggaaat gttggctcat ccacctgagc tatttcccaa tattgtcttg 6840 attggggggg ttagtttccc taaagaaggt ggagaacctg gagctttata ctcccacact 6900 gacatagtta tgtccaagaa aacaaagggc gtgtatgtta gtgaggccat tttgaagtgt 6960 tgtctaagat gtcctggtgt tactaccaag accgttcttc agacttctac cattgggagt 7020 agtctttcca aggctcattt gaagagtttg cgccaattac aaacgcacca atgtgtgcgt 7080 aggtgactct tcatttaatt aggcaagccg gtagacttcg tgtgctgcta ccatggaact 7140 acatggtctc gtatggtact gggataacca tcaataaata acccagtttt cgcactgctc 7200 atgctcttgt gggtgcgtca tattcagagc aatttgtgtt atatttatat ttagcttgtt 7260 tactgcttct gtgtgtttaa tttcatgcat ttagtggcga cagtgtgttg tttgtccttt 7320 ggacacactt gccttgttgg acgcaaaaag attttatttt ctttttactg cttttgtaga 7380 tttt 7384 //