ID GQ352453; SV 1; circular; genomic DNA; STD; VRL; 2601 BP. XX AC GQ352453; XX DT 13-AUG-2009 (Rel. 101, Created) DT 13-AUG-2009 (Rel. 101, Last updated, Version 1) XX DE Rhynchosia golden mosaic Yucatan virus clone Desm-C6 segment DNA A, DE complete sequence. XX KW . XX OS Rhynchosia golden mosaic Yucatan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2601 RA Arguello-Astorga G.R., Ambriz-Granados S., Hernandez-Zepeda C., RA Moreno-Valenzuela O.A.; RT "Characterization of Rhynchosia golden mosaic Yucatan virus (RhGMYuV) a new RT begomovirus associated with fabaceous weeds in Yucatan, Mexico"; RL Unpublished. XX RN [2] RP 1-2601 RA Arguello-Astorga G.R., Ambriz-Granados S., Hernandez-Zepeda C., RA Moreno-Valenzuela O.A.; RT ; RL Submitted (02-JUL-2009) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la Presa San Jose 2055, San Luis Potosi, S.L.P. RL 78231, Mexico XX DR MD5; e2d127b2081ea5e793778a93f9f79c29. DR EuropePMC; PMC2974675; 20958988. XX FH Key Location/Qualifiers FH FT source 1..2601 FT /organism="Rhynchosia golden mosaic Yucatan virus" FT /segment="DNA A" FT /host="Desmodium sp." FT /serotype="C6" FT /mol_type="genomic DNA" FT /country="Mexico" FT /clone="Desm-C6" FT /db_xref="taxon:457286" FT gene 177..932 FT /gene="CP" FT CDS 177..932 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="component of the virus capsid; AV1; AR1" FT /db_xref="GOA:C7FEK9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C7FEK9" FT /protein_id="ACU26077.1" FT /translation="MPKRDAPWRLMAGTSKVSRSANYTPRGGMGPKFDMGAAWVNRPMY FT RKPRIYRTYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(929..1327) FT /gene="AC3" FT CDS complement(929..1327) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="virus replication enhancer; enhances the replication FT of viral DNA; REn; AL3; AC3" FT /db_xref="GOA:C7FEL0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C7FEL0" FT /protein_id="ACU26080.1" FT /translation="MDSRTGESITAAQVESSVFIWEVPNPLFFKIHHVENPLFTTTRIY FT HIEVRFNHNLRRALGLHKAFFNFQVWTTSMRASGQRYLASFKLLVMSYLDSLGVIGINN FT VIRAVRFATNKHYVTDVLENHEIKFKIY" FT gene complement(1074..1463) FT /gene="AC2" FT CDS complement(1074..1463) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator; transactivate the FT expression of virus late genes; supressor of the plant FT silencing response; AL2; AC2" FT /db_xref="GOA:C7FEL1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C7FEL1" FT /protein_id="ACU26079.1" FT /translation="MLNSSPLKPPSIKAQHRIAKKRAVRRRRIDLNCGCSIFLHINCAD FT NGFTHRGEHHCGSGREFRFYLGGSKSPIFQDTPRREPVIHDNQDIPHRSPVQPQPTESV FT GSPQSLLQFPSLDDFDESFWAEIFS" FT gene complement(1405..2454) FT /gene="AC1" FT CDS complement(1405..2454) FT /codon_start=1 FT /gene="AC1" FT /product="replication protein" FT /note="rolling-circle replication initiator; initiate the FT virus replication by a rolling-circle mechanism; Rep; AL1" FT /db_xref="GOA:C7FEL2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C7FEL2" FT /protein_id="ACU26078.1" FT /translation="MPRNPNSFRLQARNIFLTYPQCDISKDECLQMLQHLPWSIVKPTY FT IRVAREEHSDGFPHLHCLIQLSGESNIKDARFFDITHPRRSANFHPNIQAAKDTNAVEN FT YITKDGDYCESGQYKVSGGTKANKDDVYHNAVNSGTVEGALAIIKAGDPKTFIVSYHNV FT KANIERLFYKAPEPWAPPFQLSSFTNVPDEIQAWVNDYFGRSSAARPERPISIIIEGGP FT RTGKTMWARALGPHNYLSGHLDFNSKVFSNNVEYNVIDDIAPHYLKLKHWKELIGAQRD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYICFLNKEENASLREWTIKNAKFITLEAP FT LYQSTAQDC" FT CDS complement(2010..2375) FT /codon_start=1 FT /product="AC4" FT /note="silencing supressor; probable supressor of FT silencing" FT /db_xref="UniProtKB/TrEMBL:C7FEL3" FT /protein_id="ACU26081.1" FT /translation="MNVCRCFNICHGQSSNPHTSGSQERNIQTGSHTYTVSSNYQESPT FT SRMLDFSTSLTPEGLPIFTQTFRQPKTPMPSRITSPKMVIIVNPGNTKCLGVQRQIKTT FT FTTTPSTQELSKGLSQL" XX SQ Sequence 2601 BP; 678 A; 544 C; 620 G; 759 T; 0 other; accggatggc cgcgattttt ttggagtcct gcgtgggacc acgcataaaa tgaaatttgt 60 attttgaact gaccaatcac atagcgcctg acgcgcctag atatttgtga cttggcgact 120 aagtcgttgt gggcctataa aacgtttgga aatttcattt tatgctttaa ttcaaaatgc 180 ctaagcggga tgccccatgg cgcttaatgg ctgggacctc caaggtatcc cgctctgcca 240 attacacgcc ccgtggtggt atgggcccaa aatttgatat gggcgctgct tgggttaaca 300 ggcccatgta caggaagccc aggatatatc ggacgtacag atcccccgat gtgccgagag 360 gctgtgaagg gccttgtaag gtccagtctt acgagcagcg ccatgatata tcccatgttg 420 gtaaggtcat gtgtatttct gacatcacac gtggaaatgg tattacccat cgtgtaggga 480 aacgtttttg cgtgaagtcc gtatacattt tgggcaagat atggatggac gagaatatta 540 agctcaagaa ccacaccaac agcgtcatgt tttggttggt ccgtgaccga agaccatatg 600 gtacccctat ggattttggc caggttttca acatgtttga caacgagccc agtacagcaa 660 ctgtgaagaa cgatcttcgt gatcgttatc aagtcatgca caagttctac gctaaggtca 720 ctggtggaca gtatgcgagc aacgagcagg cgttggttaa acggttttgg aaggtcaata 780 actatgtggt gtataaccat caggaagcag ggaaatacga gaatcatacc gagaacgctt 840 tgttattgta tatggcatgt acgcatgcct ctaatcctgt gtatgcgaca ttgaaaattc 900 ggatctattt ttatgattcg ataacaaatt aataaatttt gaattttatt tcatgattct 960 cgagtacatc tgttacataa tgtttgttcg tggcgaaacg aacagctcta attacattgt 1020 ttattccaat aacgcctaag ctatctaaat aagacattac aagtaattta aagctagcta 1080 aatatctctg cccagaagct ctcatcgaag tcgtccaaac ttggaaattg aagaaggctt 1140 tgtggagacc caacgctctc cgtaggttgt ggttgaaccg gacttcgatg tggtatatcc 1200 tggttgtcgt gaataacggg ttctctacgt ggtgtatctt gaaaaatagg ggatttggaa 1260 cctcccaaat aaaaacggaa ctctctacct gagccgcagt gatgctctcc ccggtgcgtg 1320 aatccattgt ctgcgcagtt aatgtggagg aatattgaac atccacagtt caagtctatg 1380 cgtcttcgac gaacagccct ctttttagca atcctgtgct gtgctttgat agaggggggc 1440 ttcaagggtg atgaatttag catttttgat cgtccactct cttaatgatg cattttcctc 1500 tttgttgagg aaacatatat aactgctccc ctctcctgga ttgcacagca cgattgatgg 1560 tatgccacct ttaatttgaa ctggcttgcc gtacttacag tttgattgcc agtctctttg 1620 ggcccctatg agctctttcc agtgctttag ctttaaataa tgcggagcta tgtcatcaat 1680 gacgttatat tccacattat tcgagaagac cttggaattg aagtcgaggt gaccactcaa 1740 ataattatgt gggcctaaag cacgcgccca catggttttg cctgttcgtg gacctccttc 1800 aattatgata ctaataggtc tctccggccg cgcagcggaa ctccgaccaa aataatcatt 1860 tacccaagct tgtatctcat ccgggacatt agtaaaggag gaaagttgaa acggaggagc 1920 ccatggttca ggagccttat agaagaggcg ctcgatgtta gccttaacat tatgataact 1980 aacaatgaac gtctttggat ctccagcctt tataattgcg agagcccctt cgacagttcc 2040 tgagttgacg gcgttgtggt aaacgtcgtc tttatttgcc tttgtacccc cagacacttt 2100 gtattgcccg gattcacaat aatcaccatc tttggtgatg taattctcga cggcattggt 2160 gtctttggct gcctgaatgt ttgggtgaaa attggcagac cttctggggt gagtgatgtc 2220 gaaaaatcta gcatccttga tgttggactc tcctgatagt tggatgagac agtgtaagtg 2280 tgggaacccg tctgaatgtt cctctcttgc gaccctgatg tatgtgggtt tgacgattga 2340 ccatggcaga tgttgaagca tctgcaaaca ttcatctttg gatatgtcgc actggggata 2400 tgttaagaaa atgtttcggg cttgcaaacg aaatgaatta gggttacgtg gcattttata 2460 aatgaaaaag ataggactcc aggggaggac tccaggatag ctctcgtcta aaacctactg 2520 ttgttggagt cctggagtcc tttatataca taaagcctct gggggactcc aggggcaaaa 2580 gcggccatcc gtaataatat t 2601 //