ID GQ332373; SV 1; linear; mRNA; STD; VRL; 7342 BP. XX AC GQ332373; XX DT 08-DEC-2009 (Rel. 103, Created) DT 08-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate WAPN6132 segment RNA1 polyprotein mRNA, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7342 RX DOI; 10.1094/PHYTO-99-12-1394. RX PUBMED; 19900006. RA Mekuria T.A., Gutha L.R., Martin R.R., Naidu R.A.; RT "Genome diversity and intra- and interspecies recombination events in RT Grapevine fanleaf virus"; RL Phytopathology 99(12):1394-1402(2009). XX RN [2] RP 1-7342 RA Mekuria T.A., Gutha L.R., Martin R.R., Naidu R.A.; RT ; RL Submitted (27-JUN-2009) to the INSDC. RL Plant Pathology, Washington State University, Prosser, WA 99350, USA XX DR MD5; 66229619c0002efb991812581894a83f. DR EuropePMC; PMC3314827; 22218961. XX CC GenBank Accession Numbers GQ332366 and GQ332373 represent sequences CC from the 2 segments of Grapevine fanleaf virus isolate WAPN6132. XX FH Key Location/Qualifiers FH FT source 1..7342 FT /organism="Grapevine fanleaf virus" FT /segment="RNA1" FT /host="Vitis vinifera cultivar Pinot Noir" FT /isolate="WAPN6132" FT /mol_type="mRNA" FT /country="USA" FT /collection_date="2008" FT /db_xref="taxon:12274" FT CDS 243..7097 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D2IKR6" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:D2IKR6" FT /protein_id="ACZ58633.1" FT /translation="MWQVPEGSQCCCTGKSFSNAEAKELRYVCSCWMSTRLVKAEAPPQ FT PPRKSGIAPTPPKSKGTIRVPLPKAAGVVPSVQKSKGASVAPAPLLKQRCEVVVQYGPP FT ADIELVYPPLVREEEKSSDKVVLPPTLKAEARVPVCCAPKWMVAIPKPPVKLAPKASKL FT RFPKGAVAYNGVNFIDTRGKVVLSEGAKRILKGVRVAIKQRQRAVRRSAACKKVRAARA FT LAKFEAIVQSERLDQLETGFQVVLPAPKMSCSLKEAAPSTTSTVVVRKRKLSKLPKILP FT EQDFSCLEGFDWGEKSHLVEADIEDDWVLVEKPVLKRRAAQTAQGRATETLTRFAATSG FT FSLGAHQKVEDFASLGQVEYLMAGEFADLCLLFLVYNDAPTLSATIEELGTKESFLEAI FT ELLKLELAEIPTDSTTCAPFKQWASAAKQMAKGVGTMVGDFTRAAGAAAIISFDMAIEF FT LQDKALKFCKKIFDVTMAPYLQHLASAHSILKKIWEKLSEWMESLKNKASLALEVMAQH FT AIFALGAMVIGGVVVLVEKVLVAAKIIPNCGIILGAFLTLFFASLGLTALECTAEEIFR FT MHACCKSAIYSMYSVEEPTMAGEGESHTMGATQGLDNAIQALTRVGQSMISFKLGSFSY FT YAKIAQGFDQLARGKRAIGELTSWLIDLVGSIYSQVSGQESTFFDELSTIVCLDVRAWL FT LKSKRVRLQVETMAIGDRITLDTIAKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSK FT LEEVHARTACAGINEGMRAFPFWVYIFGASQSGKTTIANSVIIPALLEEMNLPKSSVYS FT RPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYIHEKGMSMD FT SPLVVTTANTVVPPTNSQVVDLPSFYNRRAAVLEVRRKDGSFFTPRAYDSCIEVRFMHT FT KCPYVDSAGVPQGPAVNTPMDEGWITPSEAVAVLKNLLGEHILAEEEKLLEYRERIGND FT HPIYNAAKEFIGNMHYPGQWLTAEQKSTYGIKDDGFSFLAVDGKMYKYNVLGKLNPCES FT EPPHPNVIPWLEKKTLEIVHWDVHKHIATGPRNALVACFLQGLVQGQSKVESVERMGKD FT SSPEQQSFYKRLSLSERIYLRLCQIRIDNIQKEELAGSGRGPMAILRECLLKSKQVVID FT NYSLLLTLVAIILLISAAYTLLSTVVALASCSSFAGGMVAVTAVNNASIPCSEPRLEER FT YSPRNRFVSRISKIRGEGPSKGQGEHEELVTELYYYCDGVKRLISTCWFKGRSLLMTRH FT QALAIPIGNEIEVIYADGTIKKLVWPGRQEDGNCKGFVEFPENELVVFEHPHLLTLPIK FT YEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWNKYATARSETHTLKDEGGGNVYQ FT NKIRRYIVYSHEAKKYDCGALAVAVVQGIPKVIAMLVSGNRGVTYSSVIPNYSSSFVRG FT EVPYVPEDGIVTRGYRKVGYLHASDAPHVPSKTSFMKVPDELCFPYPDPKQPAILSVED FT ERLKGTIHEGYTPLRNGMRKFAEPMHLLEEKLLDEVAGDMVQTWYDSGEFLEDISLDQA FT INGDMDEEYFDPLVMDTSEGYPDVLDRKPGEKGKARFFVGEPGNRVFVAGCNPEKAYYQ FT LEEESKTKVPSLVSIETPKDERLKRSKIDTPSTRLFSVLPLAYNLLLRVKFLSFSRLLM FT KKRGHLPCQVGINPYSREWTDLYHRLGELSDVGYNCDYKAFDGLITDQILSVIADMINA FT GYRDPVGNIQRKNLLLAISGRLSVCGNQVYVTEAGIPSGCALTVVLNSIFNELLMIFCF FT KKIVPPIYKECFDRCVVLITYGDDNVFTVAQSIMQHFTGDALKSHMAKLGVTITDGKDK FT SLSTIPARPLLELEFLKRGFMKSVGGLINAPLEKLSIMSSLIHIRSDGSDMLQKLLDNV FT NTALVELYLHGDKAYFESVRAFYMEKLPPGAYKELTTWYQAGSFHECQKRGASGHKPQG FT LIEVSHGTAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSILPGDRNVF FT KLDLPCGDGIGRLPSKGSILNLRKPGLVMKLCERAQVEKKTLVIRDERPYIGAWAVACI FT CGESFGFGLQSVLALYANLLGPDRRNGLASYFSDFESPIHIKRVYAKTNSREGGEALKE FT VFTSCETTHYDATDVDTRKVMIQNQPEVYPSISLVGGICFPSVGEKPGALFVDDDLLKV FT ERVPGVYVSEACLKCCRRCVGVTTRTVTNTALFKNSLLKTHLKTLRRIQTHSCSRK" XX SQ Sequence 7342 BP; 1990 A; 1460 C; 1849 G; 2043 T; 0 other; atgaaaaatt tctacgggtt cttacgttat cgtgatttca acctttccca gtgaagagtt 60 taagaaactc aagattgaaa tctcttgcga agagtttaag aaactcacct cttgaagtgt 120 ttaagaaaca catcgtttca ttgtgcttgc tactcgtttt gtgcaaatta cttttaaatt 180 acgtgctttg ctgtgttatt tgtataagct tagttttgta gttgtaagag ttagttgcca 240 ctatgtggca ggtgcctgag ggctcccagt gctgttgcac tgggaagtcc ttctcaaatg 300 cggaggctaa ggaactccgc tacgtgtgct catgttggat gagcacacgt cttgttaagg 360 ctgaggcacc tcctcagcca ccaaggaaga gtgggatagc acccactccc ccaaaatcca 420 aagggactat tagagtccca ctcccaaagg ccgctggggt cgtgcccagc gtccaaaaat 480 ccaaaggagc ttctgtggct ccagcaccct tgcttaagca aaggtgtgaa gttgtggttc 540 aatatggccc tccggccgat attgaactag tttacccgcc tcttgtgcgg gaggaggaaa 600 aatcctccga taaagtggtt ctgccgccta ccctaaaggc ggaagcaagg gtgccggttt 660 gctgtgcgcc caagtggatg gtggctatcc ctaagccacc ggtgaagcta gcccctaaag 720 ctagcaagtt acggttccct aaaggggccg tagcatacaa tggtgtcaat tttattgaca 780 ccagaggaaa agtcgtccta tctgagggcg caaagaggat cctcaagggg gttcgcgttg 840 ctattaagca acgtcaaagg gctgtgcgca gatctgctgc gtgcaagaag gtgagggccg 900 cgcgtgccct tgctaaattt gaggcaatcg ttcaaagtga acggttggac cagttggaga 960 ctgggttcca agtggtgctt ccggcaccaa aaatgagctg cagcttaaaa gaagctgccc 1020 cttctaccac ttctacggtg gtagttagga aaaggaagct ttcaaagctt cccaaaattc 1080 tgcccgagca ggacttttcc tgcttggaag gctttgattg gggggagaaa tcccacctgg 1140 ttgaggcaga catcgaggac gattgggtcc tcgtggaaaa acctgtcctt aagagacggg 1200 ctgcgcaaac tgcgcagggt agggcgaccg agaccttaac tcggtttgca gctaccagtg 1260 gcttctcact gggtgcccac caaaaggtgg aagattttgc ttcactcggt caagtggaat 1320 acttgatggc aggagagttt gcggacctct gtttgctatt tttggtgtat aatgatgcac 1380 caacgttgtc tgcaactatt gaggagcttg gaacaaaaga aagcttccta gaagctattg 1440 aactcctcaa gttggaatta gctgaaattc caacagactc caccacatgt gccccattta 1500 aacaatgggc ctctgctgcc aagcagatgg ccaaaggagt tggcaccatg gttggagatt 1560 ttaccagggc tgcaggagct gctgccatta tctcctttga tatggcaata gaattcctac 1620 aagataaagc gttgaagttc tgtaaaaaga tctttgacgt tacaatggcc ccttacttgc 1680 aacaccttgc tagtgcacac tctatcctta agaagatatg ggaaaaattg tcggaatgga 1740 tggagagcct caaaaataaa gctagtcttg cacttgaagt gatggcacaa catgccatat 1800 ttgctctggg tgctatggtc ataggaggcg tagtagtgtt ggtagaaaaa gtgcttgttg 1860 ctgccaagat tatcccaaat tgcgggatta ttttgggagc ttttttaacg cttttttttg 1920 ccagcctagg gttaacagcc ctagagtgta ctgcagaaga aatcttcaga atgcatgcat 1980 gttgtaaaag tgctatttac tcaatgtatt ctgttgaaga acctaccatg gctggtgaag 2040 gggaatccca caccatgggg gcgactcagg gacttgataa tgcaattcag gctctgactc 2100 gggtaggaca gagtatgata agcttcaaac tggggagttt ttcatactat gcaaagatag 2160 cccagggatt cgaccaactt gcaagaggca aacgagcgat aggtgaactc actagttggc 2220 tcatagatct tgtagggagc atctactctc aggtttctgg acaggagagc actttctttg 2280 atgagctttc tacaattgtt tgcctggatg tgagagcgtg gctgctgaaa agtaagcgcg 2340 ttcggttgca agttgaaaca atggccatag gcgatagaat aaccttggat actattgcca 2400 aactgctaga agaaggccat aagatattgg ttactgcagc aggcgttccc aggaaaacgt 2460 ctgccgattt tacaatgtgc attaaagagg aagtatctaa gttggaagaa gtacacgcta 2520 gaacggcgtg tgcgggaatc aacgaaggta tgcgagcttt tcctttttgg gtgtacattt 2580 ttggagcttc gcaatctggg aagacaacaa ttgcaaattc agtcattatt ccagctttac 2640 tggaagagat gaaccttccc aagagctcgg tttattctag gcccaagact ggtgggtttt 2700 ggagtggtta tgccaggcag gcgtgtgtga aggtcgatga tttttatgcg atcgaacaaa 2760 cacctagctt ggcgagttcc atgattgatg tggtgaattc agagccctat cctcttgaca 2820 tggcttatat ccatgagaag ggaatgtcga tggattctcc attagttgtg accactgcaa 2880 acactgtcgt gcctcctacc aattcccaag tggtggattt accatcattt tacaatagga 2940 gggcagcagt gctagaagtg agaagaaaag acgggagttt ctttacgccg agggcttatg 3000 actcgtgcat tgaagttcgc ttcatgcaca ccaagtgccc atatgttgat tctgccgggg 3060 tgcctcaggg tcctgcagta aatactccca tggatgaagg atggatcact ccaagtgagg 3120 ctgttgcggt tctcaaaaac ctcttgggtg aacacatcct ggctgaggaa gaaaagctgc 3180 tagagtatag agagcggatt ggcaatgacc atcccatata taacgcagcg aaggaattca 3240 taggtaacat gcactatcca ggtcagtggt tgactgctga gcaaaaaagt acctatggaa 3300 tcaaggacga cggattctct ttccttgccg tggatggaaa gatgtataaa tataatgttt 3360 taggaaaatt gaatccgtgt gagtctgagc caccacatcc caatgtgatc ccatggctgg 3420 agaagaagac attggaaatc gtgcactggg atgtgcataa acatattgcc actggtcccc 3480 gtaatgcact ggttgcgtgc tttctgcagg gcttagttca aggacaaagc aaggtagaga 3540 gcgtggaacg catgggaaaa gatagttctc ccgaacagca gagcttttat aaacgattga 3600 gtttatctga gagaatttat ctgaggctgt gtcagatccg catcgacaat atccagaagg 3660 aagagctggc gggatctggt agagggccca tggcaatctt gagagaatgt ttgttgaaga 3720 gcaagcaggt ggtaatagac aactactcgc tattactgac actggtagct attattttgc 3780 ttatcagtgc tgcttatacc ctactctcaa cagtggtggc ccttgcgagt tgctcaagtt 3840 ttgctggtgg tatggttgct gtgacagccg tcaacaatgc ttccataccg tgttcagagc 3900 ctcgcttgga ggaaagatac tcccctagga atcgttttgt ctcacgtatt tctaaaatta 3960 ggggcgaggg gccttccaag ggacaaggtg aacatgagga attggttact gagctctatt 4020 attactgtga tggagtcaag agactaattt ctacatgttg gtttaaagga agatcactcc 4080 tgatgacgag acatcaggcc ctggccattc cgatcggcaa tgaaattgaa gtgatatatg 4140 ccgatggaac aataaagaag ttagtctggc cgggcagaca agaagatggc aattgcaaag 4200 gtttcgttga gtttcctgaa aatgagttag ttgtctttga gcacccacac ttattgacgc 4260 tacccattaa atatgagaaa tactttgtgg atgatgccga tagacagatt tctcccaatg 4320 tggcggttaa atgttgcgtt gcgcgcttag aagatgggat tccccaattc catttctgga 4380 ataaatacgc aacggcccgc agtgaaacac ataccctaaa agatgagggt gggggaaatg 4440 tctaccagaa caagataagg cgctacattg tttattcaca tgaagcgaag aagtatgact 4500 gtggagcctt ggctgtggct gtagtacaag gaattcctaa agtcattgca atgcttgtat 4560 ctgggaatag aggagtgacc tattcttctg taattccaaa ttacagttct tcctttgtta 4620 ggggagaagt gccatatgtg ccagaagatg ggatagtaac gagaggatat aggaaagtgg 4680 gttatttgca tgcatctgat gcaccacatg tgccttctaa gacttctttt atgaaggtgc 4740 cagatgagtt atgctttcca tatcctgatc ctaaacagcc cgccattctt agtgttgaag 4800 atgagcgcct gaagggtaca atccatgaag gttatactcc actaaggaat ggtatgagga 4860 agtttgctga accaatgcac ttgcttgaag aaaaactact tgatgaagtt gccggtgata 4920 tggttcagac atggtatgac tcgggtgaat tccttgaaga tatctctcta gaccaggcca 4980 tcaatgggga tatggatgaa gaatattttg atcccttggt gatggacacg tctgaaggat 5040 atcctgatgt tttagatcgc aaacccgggg aaaaaggaaa ggcgaggttc tttgttgggg 5100 aaccaggaaa tagggtcttt gtggctggtt gtaatcctga aaaggcttat taccaactag 5160 aagaagaatc caagactaag gtgccttcct tggtcagcat agaaacccca aaagatgaga 5220 gactgaagag aagcaaaatt gatactccca gtacgagatt gttctctgtg ctgcctttgg 5280 catataatct gttattgaga gtaaaattct tgtctttctc tcgcctactg atgaaaaaga 5340 gaggtcatct gccttgccag gtgggcatca acccttatag tcgcgagtgg actgatttgt 5400 accatcgttt aggagaactt tctgacgttg gatataactg cgattataaa gcttttgatg 5460 gtttaatcac agaccaaatt ttgagcgtta ttgctgacat gatcaacgct ggataccgtg 5520 atcctgttgg caatatacaa aggaaaaatt tgctcctggc aataagtgga cgcctttctg 5580 tgtgcgggaa ccaagtgtat gtcactgaag caggcatacc ttcaggatgc gctcttacag 5640 tagtgctcaa ttctattttc aacgaactac tgatgatttt ttgcttcaag aaaatagttc 5700 cccctatata caaggaatgt ttcgatagat gtgttgtgct catcacctat ggtgatgaca 5760 atgtttttac cgtggcacag tctatcatgc aacattttac tggcgatgcc ttaaagtcgc 5820 atatggcaaa attgggggta actatcactg atgggaaaga caagtctctt tccactattc 5880 cagcccgtcc actgctggaa ttagaatttc tgaaacgtgg attcatgaaa agcgttgggg 5940 gattgataaa tgctcctttg gagaaattgt caataatgag ctctctgatt catattagaa 6000 gtgatggctc tgatatgttg cagaaattgt tggataacgt taatactgca cttgtcgagc 6060 tatatctaca tggtgataaa gcctactttg aatcagtccg tgctttttac atggagaaac 6120 ttcctcctgg cgcttataaa gagctgacaa cgtggtacca agcaggatca ttccacgaat 6180 gtcagaagcg tggcgcgagt ggccacaagc cgcaggggct cattgaagtt agtcatggaa 6240 cagcttttgc cagttttacc caacaagctg gtacagagct ggaaaaacat gatatttgcc 6300 ctggcttgtc aattgcagga actaagtata ttgccaccga gaatgagatt gttctatcac 6360 ttagttccat tctgcccgga gatagaaatg tcttcaagtt ggatctacct tgtggggatg 6420 ggatagggcg tttaccttcc aaaggcagca tcctaaactt aagaaaaccg ggcttagtta 6480 tgaaactatg tgagcgtgcc caagtcgaaa agaaaacctt ggtcattcgt gatgaaaggc 6540 cttatattgg agcgtgggca gttgcttgca tatgtggaga gagttttggc tttgggctac 6600 agagtgttct tgcactctat gccaacttgc taggaccaga tcggaggaat ggcttggcta 6660 gctatttttc tgattttgaa agtcctattc atattaagag agtctatgcc aagacaaact 6720 cccgtgaagg aggcgaagct ttgaaggaag ttttcacttc ttgtgaaact actcattatg 6780 atgccactga cgtggatact aggaaggtga tgattcaaaa tcaaccagaa gtctatccta 6840 gtattagtct cgttggggga atctgttttc cttctgttgg ggaaaaaccc ggtgcattat 6900 ttgttgatga tgacctgctc aaggtggagc gagttcccgg ggtttatgtg agtgaagcgt 6960 gtctaaaatg ctgccgaagg tgtgtaggag ttaccaccag aactgtgact aacactgcac 7020 tttttaagaa tagtctttta aagacacatc ttaaaactct gaggcgtatt cagactcact 7080 catgttcgag gaagtgaacc tcccaattct tggtactggg ataaccaagt tcaaataacc 7140 cagtttcaaa tgctcttcaa gctctctaag gcatttgaat attagagctt ttgtgttata 7200 ttttgcttta acttgtttac cgctttagtg tgtttatttc catgctttta gtggcgacag 7260 tgtgttgttt gtcctttgga cacacttgcc ttgttggacg caaaaagatt ttccttttct 7320 ttttactgtt ttgcatttat at 7342 //