ID GQ325250; SV 1; linear; genomic RNA; STD; VRL; 2358 BP. XX AC GQ325250; XX DT 06-AUG-2009 (Rel. 101, Created) DT 06-AUG-2009 (Rel. 101, Last updated, Version 1) XX DE Tomato ringspot virus isolate Rasp1 polyprotein gene, partial cds. XX KW . XX OS Tomato ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-2358 RA Jafarpour B., Sanfacon H.; RT "Insertion of large amino acid repeats and point mutations contribute to a RT high degree of sequence diversity in the tomato ringspot virus (genus RT Nepovirus) X4 protein"; RL Unpublished. XX RN [2] RP 1-2358 RA Jafarpour B., Sanfacon H.; RT ; RL Submitted (24-JUN-2009) to the INSDC. RL Pacific Agri-Food Research Centre, Agriculture and Agri-Food Canada, 4200 RL Highway 97, Summerland, BC V0H 1Z0, Canada XX DR MD5; c6731117ab9626388c1ab6fda7b2619b. XX FH Key Location/Qualifiers FH FT source 1..2358 FT /organism="Tomato ringspot virus" FT /segment="RNA2" FT /host="raspberry" FT /lab_host="cucumber" FT /isolate="Rasp1" FT /mol_type="genomic RNA" FT /country="USA:Washington" FT /isolation_source="raspberry field" FT /collected_by="Dr. R. R. Martin" FT /db_xref="taxon:12280" FT CDS <1..>2358 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="UniProtKB/TrEMBL:C7EY72" FT /protein_id="ACT98411.1" FT /translation="AESLRRLKAFRKFSRVRPALNTSFLSPPPSPPARSSELLAAFSAA FT MNRSQPVQGGFSLPARKGVYVAPTIQGVVRAGLRAQKGFLNAVSAGIVAGARILKSKSQ FT NWFRKSMGIAHEYVEGSLASTILECAGPVVQSKESCAVVAVPPSEELISWVPSCTEYAS FT NFPRLTCSIFTEWQKPRKQSIVVFNPFRKLIDCALIMSGVSLIASVLLREVAENLVVRQ FT VVHPREMLPCAVFVSEKSLVPLDEWSFYLRKYLSPPPYPFGRESFYFQARPRFIGPMLS FT MVRAVPRIVQQPTMTEELEFEVPSSWSSPLPLFANFKVNRGACFLQVLPQRVVLPDECM FT DLLSLFEDQLPEGPLPPFSWSSPLPLFANFKVNRGACFLQVLPQRVVLPDECMDLLSLF FT EDQLPEGPLPPFSWSSPLPLFANFKVNRGACFLQVLPQRVVLPDECMDLLSLFEDQLPE FT GPLPPFSWSSPLPLFTSFKVNRGACFLQVLPARRVVLDEFMDVLPFLLSPPVLHQEEEP FT EMAPAVLEAATTPLVLHQEEEPEMAPAVLEAVTTPLVLHQEEESRMVPAVLEAANSIDD FT VTEAFFDDLECESFYDSYSCEEEAEWAEVPRCKTMSELYASLTFVGDAEGLRKSHMTYF FT RRLVAYFRSFEEPLYSSRAFYSVKVKPVYRPKKFEGHIDCTCLDGNMGEWEWRESVDAM FT WRCPGRLLNAKRTYTRDDWERVQYLRISSNGGRYRQNWRILNLEEMDLSLHEYPEIPSA FT PVQSSLFSRVVNRGATLASNIPFVTRSNCQSSL" FT mat_peptide <1..156 FT /product="X3 protein" FT mat_peptide 160..2349 FT /product="X4 protein" FT /note="released after cleavage by the ToRSV proteinase" FT repeat_region 913..1506 FT /rpt_type=TANDEM FT /rpt_unit_range=913..1074 FT variation 1449 FT /replace="t" FT /note="synonymous substitution" FT repeat_region 1522..1716 FT /rpt_type=TANDEM FT /rpt_unit_range=1522..1587 FT variation 2174 FT /replace="a" FT /note="results in glycine to aspartic acid substitution" FT mat_peptide 2350..>2358 FT /product="movement protein" FT /note="directs the cell-to-cell movement of the virus via FT the formation of tubular structures that traverse the cell FT wall and contain virus particles" XX SQ Sequence 2358 BP; 492 A; 550 C; 574 G; 742 T; 0 other; gccgagtctc ttcggaggct caaggccttt cgcaagttca gcagggttcg ccctgcttta 60 aacacttctt ttctttctcc tcccccttcc cctccggctc ggtcttccga gcttttggcg 120 gcttttagtg ccgccatgaa caggtctcag cctgttcaag ggggtttttc ccttcctgcc 180 cgcaagggcg tttatgtcgc tcccaccatt cagggtgtgg tgcgtgctgg gcttcgtgct 240 cagaagggct ttttaaatgc cgtttctgcc ggcattgtgg ctggagctcg tattttaaag 300 agcaaaagtc aaaattggtt tagaaagagc atgggcattg cccatgagta tgtggagggt 360 tctctggcca gcaccatttt agagtgtgct ggtccagttg tgcaaagtaa ggagagctgc 420 gctgttgttg cagttccccc atctgaggag ctcatttctt gggttccctc ttgcactgag 480 tatgcgagca attttcctag gctcacatgt tctattttta ctgaatggca aaaaccgcgc 540 aagcagtcca ttgtcgtttt caatcctttc cgcaagctca tcgattgtgc tttaatcatg 600 agtggcgtta gcttaatcgc gagcgtcctt ttacgtgagg ttgcggaaaa tcttgtagtg 660 cgacaggtag ttcacccaag ggaaatgcta ccttgtgcag tttttgtctc ggagaaatcc 720 ttagtcccac tggacgaatg gagtttctat ctccgcaaat atttgtcacc acctccctat 780 ccttttggta gggaaagttt ctattttcaa gctaggcccc gttttattgg acctatgctt 840 tctatggtta gggctgtacc acgaattgta caacagccca ccatgacgga ggaactcgaa 900 tttgaagttc cttcctcatg gtcttctcct ttacctctat ttgcgaattt taaagtaaat 960 aggggcgcat gttttttgca agtcctgcct caaagggttg ttttacctga tgaatgcatg 1020 gatttgcttt ctctttttga ggatcaattg ccagaggggc ctttgccccc ctttagttgg 1080 tcttctcctt tacctctatt tgcgaatttt aaagtaaata ggggcgcatg ttttttgcaa 1140 gtcctgcctc aaagggttgt tttacctgat gaatgcatgg atttgctttc tctttttgag 1200 gatcaattgc cagaggggcc tttgcccccc tttagttggt cttctccttt acctctattt 1260 gcgaatttta aagtaaatag gggcgcatgt tttttgcaag tcctgcctca aagggttgtt 1320 ttacctgatg aatgcatgga tttgctttct ctttttgagg atcaattgcc agaggggcct 1380 ttgcccccct ttagttggtc ttcaccttta cctctgttca cgagtttcaa agtgaataga 1440 ggcgcatgct ttttgcaggt tttgcctgca cgcagggtcg ttcttgatga gtttatggac 1500 gtcttgccct ttttgctttc tccaccggta ttgcaccagg aagaggagcc agaaatggcc 1560 cctgctgtgt tggaagcagc aacaactcca ctggtattgc accaggaaga ggagccagaa 1620 atggcccctg ctgtgttgga agcagtaaca actccactgg tattgcacca ggaagaggaa 1680 tcaagaatgg ttcctgctgt gttggaagca gcaaattcta ttgatgatgt caccgaagcc 1740 ttctttgatg acttggaatg tgagtctttc tatgactcat attcttgtga agaagaagct 1800 gagtgggctg aagtgccaag gtgtaagact atgtctgaac tttacgcttc tctcactttt 1860 gttggtgacg ccgaggggct acgtaagtct cacatgactt atttccgccg ccttgtggct 1920 tactttcggt ccttcgaaga gccgctttac tcttcacgcg ccttttatag cgtgaaggtg 1980 aagccagttt atcgtcccaa aaaatttgag ggacatatcg attgtacctg cctcgatggc 2040 aatatgggcg agtgggaatg gcgcgaaagc gtcgacgcca tgtggcgttg cccagggcgc 2100 ttgctcaatg caaagcgcac atatactcgc gatgattggg agcgtgtgca atatttacgc 2160 ataagctcca atggtggtag ataccgccaa aattggcgca ttttaaacct cgaggagatg 2220 gatctctctt tgcatgaata tccagagatt ccatctgccc cagtacagtc ctctcttttt 2280 tcgagggttg tcaatagggg agccaccttg gcaagtaata tcccctttgt cactcgttct 2340 aactgccagt cttcttta 2358 //