ID GQ325249; SV 1; linear; genomic RNA; STD; VRL; 2070 BP. XX AC GQ325249; XX DT 06-AUG-2009 (Rel. 101, Created) DT 06-AUG-2009 (Rel. 101, Last updated, Version 1) XX DE Tomato ringspot virus isolate PYB-1 polyprotein gene, partial cds. XX KW . XX OS Tomato ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-2070 RA Jafarpour B., Sanfacon H.; RT "Insertion of large amino acid repeats and point mutations contribute to a RT high degree of sequence diversity in the tomato ringspot virus (genus RT Nepovirus) X4 protein"; RL Unpublished. XX RN [2] RP 1-2070 RA Jafarpour B., Sanfacon H.; RT ; RL Submitted (24-JUN-2009) to the INSDC. RL Pacific Agri-Food Research Centre, Agriculture and Agri-Food Canada, 4200 RL Highway 97, Summerland, BC V0H 1Z0, Canada XX DR MD5; 85f1adac0d7341a001b5ac04c37c0c24. XX FH Key Location/Qualifiers FH FT source 1..2070 FT /organism="Tomato ringspot virus" FT /segment="RNA2" FT /host="peach yellow bud" FT /lab_host="Nicotiana benthamiana" FT /isolate="PYB-1" FT /mol_type="genomic RNA" FT /country="USA:California" FT /isolation_source="infected peach orchard" FT /collected_by="Dr. A. Rowhani" FT /db_xref="taxon:12280" FT CDS <1..>2070 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="UniProtKB/TrEMBL:C7EY71" FT /protein_id="ACT98410.1" FT /translation="FSAAMNRSQPVQGGFSLPARKGVYVAPTIQGVVRAGLRAQKGFLN FT AVSTGIVAGARILKSKSQNWFRKSMGIAHEYVEGSLASTILECAGPVVQSKESCAVVAV FT PPSGEFTSWVPSCTEYVSNFPKLTCSIFTEWQKPRKQPIVVSSPFRKLIDCALIMSGVS FT LIASVLLLEIAENLAVRQVVRPREMLPCAVFVSEKSLVRLDERSFYLRKYLSPPPYPFG FT RESFYFQARPRFIGPMLPMVRAVPRIVQQPTMTEELDFEVPSSWSSPLPLFANFKVNRG FT ACFLQVLPQRVVLPDECMDLLSLFEDQLSEGPLPPFSWSSPLPLFASFKVNRGACFLQV FT LPQRVVLPDECMDLLSLFEDQLSEGPLPPFSWSSPLPLFASFKVNRGACFLQVLPARRV FT VPDEFMDVSPFLTTPLVLHQEEESRMVPAVLEAANSIDDVTEAFFDDLECESFYDSYSD FT EEEAEWAEVPRCKTMSELSTSFTLVGDVEGLRKSHVTFFRRLVTYFRSFEEPLYSSRAF FT YDVKVKPVYRPKKFEGHIDCTCLDGNMGEWEWRESVDAMWRCPGRLLNAKRTYTRDDWE FT RVQYLRMGFNEGRYRRNWRILNLEEMDLSLHEYPEIPSAPVQSSLFSRVVDRGATLASG FT IPFVTRSNCQSSLGTPDLNVHTIHQETPTTLRAPPFTGARNVVGSSDAGANAAPY" FT mat_peptide <1..36 FT /product="X3 protein" FT mat_peptide 37..1854 FT /product="X4 protein" FT /note="released after cleavage by the ToRSV proteinase" FT repeat_region 793..1224 FT /rpt_type=TANDEM FT /rpt_unit_range=793..951 FT mat_peptide 1855..>2070 FT /product="movement protein" FT /note="directs the cell-to-cell movement of the virus via FT the formation of tubular structures that traverse the cell FT wall and contain virus particles" XX SQ Sequence 2070 BP; 431 A; 474 C; 520 G; 645 T; 0 other; tttagtgccg ccatgaacag gtctcagcct gttcaagggg gtttctccct tcctgcccgc 60 aagggcgttt atgtcgctcc caccattcag ggtgtggtgc gtgctgggct tcgtgctcag 120 aagggttttt taaatgccgt ttctactggc attgtggctg gagctcgtat tttaaagagc 180 aaaagtcaaa attggtttag aaagagcatg ggcattgccc atgaatacgt ggagggttct 240 ctggccagca ccattttaga gtgtgctggt ccagttgtgc aaagcaagga gagctgcgct 300 gttgttgcag ttcccccatc tggggagttc acttcttggg ttccctcttg cactgagtat 360 gtgagcaatt ttcctaagct cacatgttct atttttactg aatggcaaaa accgcgcaag 420 cagcccattg ttgtttccag tcctttccgc aagctcatcg attgtgcttt aatcatgagc 480 ggcgttagct taattgcgag cgtcctttta cttgagattg cggaaaatct tgcagtgcga 540 caggtggttc gcccaagaga aatgctgccc tgtgcagttt ttgtctcgga gaaatcctta 600 gtccgattgg acgaacggag tttctatctc cgtaaatatt tgtcaccacc tccctatcct 660 tttggtaggg aaagttttta ttttcaggct aggccccgtt ttattggacc tatgcttcct 720 atggttaggg ctgtaccacg aattgtacaa cagcctacca tgacggagga actcgatttt 780 gaagttcctt cctcatggtc ttctcctttg cctctgtttg cgaattttaa agtgaatagg 840 ggcgcatgtt ttttgcaagt cctgcctcag agggttgttt tacctgatga gtgcatggat 900 ttgctttctc tttttgaaga tcaactatcg gaggggcctt tgcccccctt tagttggtct 960 tcacctttac ctctgttcgc gagtttcaaa gtgaataggg gcgcatgttt tttgcaagtc 1020 ctgcctcaga gggttgtttt acctgatgag tgcatggatt tgctttctct ttttgaagat 1080 caactatcgg aggggccttt gccccccttt agttggtctt cacctttacc tctgttcgcg 1140 agtttcaaag tgaatagagg cgcatgcttt ttgcaggttt tgcctgcacg cagggtcgtt 1200 cctgatgagt tcatggacgt ctcgcccttt ttgacaactc cactggtatt gcaccaggaa 1260 gaggaatcaa gaatggttcc tgctgtgttg gaagcagcaa attctatcga cgatgtcacc 1320 gaagccttct ttgatgactt ggaatgtgag tctttctatg actcatattc tgatgaagaa 1380 gaagctgagt gggctgaagt gccaaggtgt aagactatgt ctgaacttag cacttctttt 1440 actcttgttg gtgatgtcga ggggctacgt aagtctcacg tgactttttt ccgtcgcctt 1500 gtgacttatt ttcggtcctt cgaagagccg ctttactctt cacgcgcctt ttatgacgtg 1560 aaggtgaagc cagtttatcg tcccaaaaaa tttgagggac acatcgattg tacctgcctc 1620 gatggcaata tgggcgagtg ggagtggcgc gaaagcgtcg acgccatgtg gcgttgccca 1680 gggcgcttgc tcaatgcaaa gcgcacatac actcgcgatg attgggagcg tgtgcaatat 1740 ttacgcatgg gcttcaatga gggtagatac cgccgaaatt ggcgcatttt aaaccttgag 1800 gagatggatc tctccttgca tgaatatcca gagattccgt ctgccccagt acagtcctct 1860 cttttttcga gggttgttga taggggagcc accttggcaa gtggtatccc ctttgtcact 1920 cgttctaact gccagtcttc tttaggaact cctgatttaa atgtacatac tatacatcag 1980 gaaaccccta ctacattgcg agctccacct tttacaggag cgcgcaatgt agtgggatcc 2040 tctgatgcgg gtgcaaatgc tgctccgtac 2070 //