ID GQ305132; SV 1; linear; genomic RNA; STD; VRL; 5109 BP. XX AC GQ305132; XX DT 02-AUG-2009 (Rel. 101, Created) DT 10-JUN-2010 (Rel. 105, Last updated, Version 2) XX DE Tomato chocolate spot virus segment RNA2, complete sequence. XX KW . XX OS Tomato chocolate spot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus; OC unclassified Torradovirus. XX RN [1] RP 1-5109 RX DOI; 10.1007/s00705-010-0653-9. RX PUBMED; 20376682. RA Batuman O., Kuo Y.W., Palmieri M., Rojas M.R., Gilbertson R.L.; RT "Tomato chocolate spot virus, a member of a new torradovirus species that RT causes a necrosis-associated disease of tomato in Guatemala"; RL Arch. Virol. 155(6):857-869(2010). XX RN [2] RP 1-5109 RA Batuman O., Kou Y.-W., Gilbertson R.L.; RT ; RL Submitted (22-JUN-2009) to the INSDC. RL Plant Pathology, UC Davis, One Sheilds Ave., Davis, CA 95616, USA XX DR MD5; 1331ab63fe1da3dd8d45edd696a5fd61. DR EuropePMC; PMC2880234; 20376682. XX FH Key Location/Qualifiers FH FT source 1..5109 FT /organism="Tomato chocolate spot virus" FT /segment="RNA2" FT /host="tomato" FT /mol_type="genomic RNA" FT /country="Guatemala" FT /db_xref="taxon:661101" FT 5'UTR 1..171 FT CDS 172..726 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:C7EXM3" FT /protein_id="ACT79983.1" FT /translation="MSFIGRLNTAEEEKAFHQQVASSNWICSVDVGSGVINSNPTLDFK FT VIPPTGGAVSVLTVSWENSTPQLVPGHYLLRSGTWPVKNVKLSGLLVHRSVRLETTRKV FT LEQNKVSIAQQTENSVSDKGKTTETAWKFKEEIAHLNAELERARKEIAEKQSEISKLQL FT QLSNQPSNNDIFTGWSEDGPK" FT CDS 686..4279 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF2" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C7EXM4" FT /protein_id="ACT79984.1" FT /translation="MISSQVGQKMGPSNRAQEEASERLITQITAAVEAGNKNLLKKLGM FT GSYGVLYGSQEKRAMELFDPDDVTRITSLWSQFKHRFVESKDHANLFFHLYGVLFFMVP FT HVHSGEGRVKISLCSSNDPISPVIQEKSLSLADGAQAVLMSPSITLPFLKRGPMFYYTL FT ECENTRAQIPCSVVAIWKQKIDTRSAVYSQQETMSWAIEALNRPQFFQDRQEAAQYIAS FT VYSSGQSSQMALENRAFVGERLGNTRMDVLSESSMTRSSSLRIPTLKVQSRRFPSMELP FT DVPNTSRLTMREETAHDEDTGGLFPVKKAQGFNMGVIWDNLGIDSFTHIDFPDDWTERT FT IAQQVQYILFDEASRGNVIVPKHVSKREQHNIYKEHITEDNYVDILAAYGITKVGNLSR FT SLDWYDMSLHERVIALVHQRDHQVYIMGDFTNPLPSFDCYDGLTIGERKLAEIKANFAR FT QLSLESKKETAPKLAQVAGAGIAESKPSESVGDSFVSTTSMKDNGEESPITITAEHIED FT DTTPGDVIFDFGSDMDSNPAIDLEMQQPVCVASNEFFNVGVFEFVWEKSKNVAEQVMSL FT ALPAALFAKKKETSMGAQMLKYYDAALIMYKVILYVSGVGAISGQLALVWDECNVLNRK FT KEFINIATLYASKHTLVSASQQQSEEFCFTPTGIGKYVPLDEGTGATDLGSIRVFVTHP FT LSSATELSNVPCHIHLQCKVLSTNILQPPRLIAQSQFGMKPGQTYFPRFPTNQVLLHYN FT WGTAAAMGTTLVSIFSPSGIYESDGVLQPSLLGNVARNCKWWTGTCVFEICIEKTLFHS FT GSLAIGLGTLNTKMSNAHDIFNMPHVVCNLEMGRKFRFKCTVTNWNGKNLLSTGRKSSL FT PRPGHFSHLRLFATVMKPLVSTSVHLDSVGVTVQLKCLENLVLGGTVSVKPIYGHWTKG FT KSAVDFLFSEMDMTQRKEIEKLRKDNVEQYDAKGKQPVKQSQVNLSIREKFSYGAVQYF FT CMGWKDEERLLVIPCAPWSVRFEAQSAVKEAITCPFIDWCTSFCYWSGSLNYSIVVHRV FT QSSPNVGGILNVALDSSGYPFPAGLSKGNYVVSAGGGSKWNFSYGVTTNIFSFTVQDDE FT FFCRRHTRMREFSKTQSRIMSLQDRLGNLIINLPPVGLVSSIEILISPGPDFKLEVAQP FT PSANHEKFLGNMQTHTYQYTSDFSELRDFEV" FT 3'UTR 4280..5093 FT polyA_site 5093 XX SQ Sequence 5109 BP; 1428 A; 1044 C; 1198 G; 1439 T; 0 other; aaaagaatta ttaaatactt acttgttatg caacctacgc cgttgtgtga accacgtctt 60 cactaagcaa gtatttattt gatatctttg ttttgagttc ttatttcaat tttcttcttt 120 tcgagtttat tacccatcac ttttcttttc tgataatctc acaccttgtt tatgtctttt 180 attggaaggt tgaacacagc agaggaagaa aaagctttcc accaacaagt cgcttcatcc 240 aattggattt gctcggtgga cgtaggatca ggtgtaatta atagtaaccc cactctagat 300 tttaaagtga ttcccccaac aggtggtgct gtttcagtgc taactgtttc gtgggagaat 360 tcaacaccac agttggttcc gggccattat ttgctacgaa gtggtacttg gcctgttaaa 420 aacgtgaagt tatctggact cttggtgcat cgttctgttc gtttggaaac caccaggaaa 480 gttctagaac agaataaagt ttcaatagct caacaaactg aaaattctgt atctgacaaa 540 gggaaaacaa ccgaaacagc ttggaagttc aaagaggaaa ttgctcatct caacgctgag 600 cttgagcgag caagaaagga aatagcagaa aaacaatcag aaatatccaa gttgcaactt 660 cagctctcca atcagcctag taacaatgat atcttcacag gttggtcaga agatgggccc 720 aagtaacagg gcgcaggaag aggcttctga gcggctaatc acacagatta ctgcggctgt 780 tgaagctgga aacaaaaacc tgctcaaaaa gctcggcatg ggttcatatg gggtccttta 840 tggatcgcag gaaaagagag ccatggagct ctttgacccc gatgatgtca cacgtatcac 900 gtcattgtgg tctcagttca aacatcgttt tgtagagtct aaagaccatg caaatctttt 960 ctttcatttg tatggtgttc ttttcttcat ggtccctcat gtacatagtg gggaggggcg 1020 tgtcaaaata agtttgtgtt cgagcaatga tcccatcagc ccggtgattc aagagaagtc 1080 cttgtcacta gctgatggtg cacaagccgt gctcatgagt cctagtatca cattgccctt 1140 tctcaagaga ggaccaatgt tctactacac tctagagtgt gagaatacac gtgcacagat 1200 accttgttcc gtggtagcga tatggaaaca aaagatagat acaaggagtg ccgtatactc 1260 tcaacaggaa actatgtctt gggccattga agcattgaac aggcctcaat ttttccaaga 1320 tagacaggag gctgcccaat acattgcttc agtatactct agtgggcaaa gttcccagat 1380 ggccttggag aatcgtgctt ttgttggaga gaggctcggg aatacacgaa tggatgtact 1440 gagtgagagc tccatgactc gtagctcttc cctgcgaatt ccgaccctca aggtgcaaag 1500 taggcggttt ccatccatgg aactacctga cgtgcctaac acctcacgat taacaatgcg 1560 agaggaaaca gctcacgatg aagacactgg tggattgttt ccagttaaga aggcacaagg 1620 cttcaacatg ggtgttatct gggataatct gggcatagac tcctttacac acattgactt 1680 cccagatgat tggactgagc gcacgattgc gcaacaggtt caatacattc tgtttgatga 1740 ggcttcacga ggcaatgtga tcgtgccgaa acatgtatca aagagggagc agcacaatat 1800 ttacaaggag cacatcactg aggacaacta tgttgatatt cttgctgcat atggcatcac 1860 caaggtagga aatctctctc gttcattgga ttggtatgat atgtcgcttc atgagagagt 1920 cattgcccta gtgcaccaaa gagatcacca agtgtacata atgggtgatt ttacaaaccc 1980 cctaccttca tttgattgtt atgacggtct cacaattggt gagaggaagc tggcagaaat 2040 caaggccaat tttgcccgcc agttgagctt ggagagtaag aaggaaactg cacccaaact 2100 tgcacaagtt gcaggtgctg gcatcgcaga aagcaagcca agtgagtccg ttggggattc 2160 atttgtttca accaccagca tgaaggacaa tggagaggaa agtccaataa ctatcaccgc 2220 agagcatatt gaagatgata caactcctgg tgatgttatt tttgacttcg gttcagacat 2280 ggactcaaac ccagccatag atttagagat gcaacaacca gtatgtgtgg caagcaatga 2340 atttttcaat gttggtgtgt ttgagttcgt gtgggaaaag agcaaaaatg tggccgaaca 2400 agtcatgtca ttggcactac cagctgcatt gtttgcaaag aagaaagaga catccatggg 2460 ggcacaaatg ctcaagtatt atgatgctgc tctcatcatg tacaaggtca tactgtatgt 2520 gtccggagtt ggtgccatat caggacaatt ggctttagtc tgggatgagt gcaatgttct 2580 caatagaaag aaagaattta taaacattgc cactctttat gccagcaagc atacccttgt 2640 ttctgcatcc cagcaacaga gtgaggaatt ttgttttaca ccaacaggga tagggaagta 2700 tgttccactt gatgagggta ctggtgccac ggacttagga agcatacgtg tgtttgtaac 2760 acatccctta tcaagtgcca cagagttgtc aaatgtccca tgccatatcc atttgcagtg 2820 caaggttctc tccacaaata tcctgcagcc tcctcggcta attgcacaat cgcagtttgg 2880 aatgaagccg ggccaaacat atttcccgcg gttccccacc aatcaagttt tgttacatta 2940 taattgggga accgctgcag caatgggcac tactcttgtg agcatattct cgccttcggg 3000 tatctatgag agtgatggtg tactgcaacc atccttactt ggtaatgtag cgcggaattg 3060 caaatggtgg actgggacgt gtgtctttga gatttgtatt gagaaaacgc tcttccactc 3120 aggaagtttg gccataggac tcgggacact gaacacaaaa atgtcaaatg cacatgatat 3180 ttttaacatg cctcatgtag tgtgcaatct tgagatgggc cgcaagtttc gcttcaaatg 3240 cactgtcacg aactggaatg ggaagaactt gttgtccact ggaaggaaga gctcactgcc 3300 gcggccggga catttttccc atttacggct ttttgctacg gttatgaagc cacttgtgtc 3360 cacatcagtt caccttgact cagttggtgt cacggtgcag cttaaatgcc ttgaaaattt 3420 ggtcctaggt ggtacggttt ctgtgaagcc aatctatgga cactggacaa aaggaaagag 3480 tgcggtggac tttcttttct ctgagatgga tatgacccag cgcaaggaaa ttgaaaagct 3540 caggaaggat aacgtggaac aatatgatgc caagggtaaa cagccagtca agcaaagcca 3600 ggtgaatttg tccattaggg agaaattttc atatggtgca gtccagtatt tctgcatggg 3660 ctggaaggat gaagaaaggt tgcttgtaat accatgtgct ccctggtcag tgcgctttga 3720 agctcagagt gctgttaagg aggcaataac ctgtcctttc atcgattggt gtacatcctt 3780 ttgttactgg tcaggcagcc tcaattattc catagttgtg caccgagttc agtccagccc 3840 taatgtcgga ggcattctga atgtagctct tgactcctct ggttatccat ttccagcagg 3900 cctgagtaag ggaaattatg tagtttcagc aggaggagga tccaagtgga acttttccta 3960 tggtgttaca acaaacatat tttcttttac ggttcaagat gatgaatttt tctgtaggag 4020 acacactcgc atgagagagt tctcaaaaac tcaatctaga ataatgtctc ttcaggatag 4080 gctcggtaac ttaataataa atcttccccc cgtagggctt gtgagttcaa tagagattct 4140 catctccccg ggtcctgact tcaaactgga agtggcacaa cctccttctg ccaaccacga 4200 gaagtttctt gggaacatgc aaacacacac ttatcaatat acctctgatt tctctgagct 4260 cagagatttt gaagtttgaa aagtaccatg ccactggatt gtcgtggcca agctttatct 4320 atctgtacgt gtactgtaga tagtacgtag atgtaagttt gattagaggt ttgattaacg 4380 gagagtactg ctcttaattg agtgggagtc cggccccatc gtctgggtac ccacgaatct 4440 acgtgggtga gaggtttgca cgctcctctg taaataaggt tcgtgtgccc tgcttggata 4500 gaaagcactt gtttggtgtt gtcaacgttc cgacttagga caggaaaaca ccccttagac 4560 tttatcggta aagtcaggat gtggagaagg atgctagtta atttgggtga agcatttcag 4620 ggtcggacat aagatggctg tccgaagata tgctttgagc aagttaatgg gcatctggtt 4680 tctacatcaa ctcatttgga gtataaacaa taaactcacc tggagtataa acagggttcg 4740 ttggtcacag aacaaggagt gactcgtttg gaatccgata atttccctta gctgccgtac 4800 agctgctgtc attaggggtg acagtgaaga atcaccatcc ctcttcctcc ctaggttcgt 4860 ccagaggttt cagagtgatg acttttttgc caagaagcaa tgaatggcac gtgttgcgtc 4920 gacaaagcac cggttggtat ggttagccaa caaaaaccat attatattag atagttttat 4980 ctttgtgttt tagtagttta agtaactttt atttactggg ggcgacagaa gaggtttgtc 5040 cttttacttt tcttgctatg ttggacacaa aaagattttc tttcttttat tttaaaaaaa 5100 aaaaaaaaa 5109 //