ID GQ273988; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC GQ273988; XX DT 02-NOV-2009 (Rel. 102, Created) DT 02-NOV-2009 (Rel. 102, Last updated, Version 1) XX DE Saccharum streak virus isolate SacSV_ZA_Emp_T1_2008, complete genome. XX KW . XX OS Saccharum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2744 RX DOI; 10.1007/s00705-009-0490-x. RX PUBMED; 19756359. RA Lawry R., Martin D.P., Shepherd D.N., van Antwerpen T., Varsani A.; RT "A novel sugarcane-infecting mastrevirus from South Africa"; RL Arch. Virol. 154(10):1699-1703(2009). XX RN [2] RP 1-2744 RA Varsani A., Lawry R., Martin D.P., Shepherd D.N., van Antwerpen T.; RT ; RL Submitted (16-JUN-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 6ad97abc206dbc498cc0e667bc3a95e8. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Saccharum streak virus" FT /host="Saccharum genotype N44" FT /isolate="SacSV_ZA_Emp_T1_2008" FT /mol_type="genomic DNA" FT /country="South Africa:KwaZulu-Natal" FT /lat_lon="28.74 S 31.89 E" FT /isolation_source="sugarcane plant with streak symptoms FT similar to those produced by Maize streak virus (MSV)" FT /collection_date="2008" FT /db_xref="taxon:683179" FT CDS 156..485 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D0U2D6" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D0U2D6" FT /protein_id="ACY08851.1" FT /translation="MEGAYGAIYPSAQSALPRVPIAAPSSPSLPWSRVGEIAIFVFVAV FT LSFYLLWVWVLRDLIFVVKARRGHSTEELRFGPTVQAPPVAPVSVPGASAVTASCPPEP FT RPFCV" FT CDS 500..1243 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D0U2D7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D0U2D7" FT /protein_id="ACY08852.1" FT /translation="MSSSLGKRKRSNGGDWSKRSAKKKPAGTPSRRAGPGRGPRPALQI FT ATYQAAGTSMVTVPSGGVCELLATYARGSDEGNRHTNETITYKVALDYHFVASSAACRY FT SSIGVGVVWLVYDAQPSGNAPQVTDIFPHPDSLAAFPYTWKVGREVCHRFVVKRRWTFT FT METDGRIGSDIPRSTDSWPPCKRSIYFHKFATGLGVKTEWKNLADGGVGSIKKGALYIV FT IAPGNGLEFTAHGNARLYFKSVGNQ" FT CDS complement(join(1442..1844,1931..2592)) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D0U2D8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D0U2D8" FT /protein_id="ACY08853.1" FT /translation="MAYANSTSTESNSSRSFRHRNANTFLTYSKCSLDPEILGLSLWSK FT LAPWTPAYILVAREAHQDGTWHCHALAQSVRPVTTSDPRFFDVNEYHPNIQSAKSVDRV FT REYILKDPLCQWEKGTFVPRKKPFVPQIGESSNTRASKDDIVRDIIQHSTNKHEYLSML FT QKELPYEWATKLQYFEYSANKLFPEIAEPYTNPHPPTQPDLHCYERIEEWLNFNVYQVQ FT PQEAGRARSLYIVGPTRTGKSTWARSLGRHNYWQNNVDWSSYDEEAVLNVIDDIPFKYC FT PCWKQLVGCQKNYVVNPKYGKKKKVAKRSIPAVILANEDEDWLRDMTPAQRDYMEANCE FT VYIMSSGEKWFTPA" XX SQ Sequence 2744 BP; 566 A; 691 C; 777 G; 710 T; 0 other; taatattacc gcatcccctt ttgcgagggc cccaaaggcc cgagcggtcc tagccgcttt 60 gtctctgtgg ggtatttcga agatgaaatc tgctctttcg accgccgaca ggctaaggtg 120 cgatataaat cagccgtcct cgccttgctt tgaacatgga gggcgcctac ggtgcgatct 180 atccttccgc gcagagtgct ttgccgcggg tacccattgc agctccgtcc tctccgagct 240 tgccgtggag tcgcgtcggt gagatagcta tctttgtctt tgttgcagta ctaagctttt 300 atctgctgtg ggtgtgggtg ctgagagatc ttatcttcgt tgtgaaggct cgccgagggc 360 actcaacgga ggagctgcgc tttggcccta ccgttcaagc ccctcccgtc gcgccagtgt 420 ctgttcctgg tgcgtccgct gtcactgcta gctgtccacc ggagcctaga cctttctgtg 480 tctaggcggg ccatcagcta tgtcttcttc ccttggcaag aggaagaggt cgaatggagg 540 cgattggtct aagcgctccg ctaagaagaa gccggcgggt accccttcac gccgtgctgg 600 gcctggaaga ggcccacgtc cagctctaca gattgcgacc taccaggccg ctggaacctc 660 tatggttact gtccctagcg ggggcgtttg tgaactcctt gcgacatatg ctcgagggtc 720 cgacgagggc aaccgtcaca ccaacgagac tatcacgtac aaggttgcct tggactacca 780 ctttgtagcc tcgtctgctg cttgcaggta ctcttccatc ggtgtggggg tcgtgtggtt 840 ggtgtatgat gcacagccct ccggcaatgc cccccaggta acggatatct tcccgcatcc 900 tgatagtctg gccgcgttcc cgtacacttg gaaggtcgga agggaggtgt gtcatcgctt 960 cgtggtgaag cggaggtgga ctttcacgat ggagacggac gggcgtatcg ggagcgatat 1020 ccctcggtcg acggattctt ggccgccctg caagcggtct atttactttc acaagtttgc 1080 caccggtctc ggtgtcaaaa cggagtggaa gaatctcgct gatggaggag ttggatccat 1140 taagaagggt gccctgtata ttgtaattgc ccccggcaat ggtttagagt ttacggcgca 1200 tggcaatgcc cgtttgtact ttaagtctgt tggaaatcag tgatttccac gaaataataa 1260 ataaatttat ttattacaat gattggaatg cgtagcatta cattacagta catagtctgc 1320 agatgtgcag acccaaacac acacataccc aactcggcgg tcagatcgta ggcggctaag 1380 gggtaggact cgaaaaaaac acacgaaaaa catgatatta ttataattgc agccgccggc 1440 tttacgcagg ggtgaaccac ttctccccgg agctcatgat gtagacttcg cagtttgcct 1500 ccatgtagtc ccgctgcgcg ggagtcatgt cccgcagcca gtcctcatct tcgttggcga 1560 ggattacagc aggaatggag cgtttagcga ccttcttttt cttcccgtat ttcgggttta 1620 caacgtagtt cttctgacag ccaacgagct gcttccagca aggacagtat ttaaagggaa 1680 tgtcatctat gacattcagg actgcttcct cgtcatatga ggaccagtcc acgttattct 1740 gccagtagtt gtggcgacct aggcttctcg cccaggtgga tttgccggtc cttgttggac 1800 cgacgatgta caggcttcgc gctcttccgg cctcttgagg ttgctgtgat acagttcgtc 1860 gagccagaca aggtcagagg ttgcctgttc taaagagcag ccatgaagaa gagtatagtc 1920 ctcaggagtg acctgataga cgttgaagtt cagccattct tcaatgcgct cgtagcagtg 1980 gaggtcgggt tgtgttggtg gatgaggatt ggtgtagggc tctgctatct cagggaacag 2040 cttattagct gagtactcga agtactgcag cttcgttgcc cactcgtacg gtagctcctt 2100 ctgaagcatg gagaggtact cgtgcttgtt ggtggagtgt tgaatgatat cgcgaacgat 2160 atcatccttt gaggcgcgag tgttagagct ctcaccgatc tgaggaacga agggcttctt 2220 ccgtggaacg aaagtaccct tctcccactg acacaatggg tccttgagta tgtactctct 2280 taccctgtct accgatttag cagactggat gttggggtgg tactcattta cgtcgaagaa 2340 ccgcgggtct gaagtcgtca cggggcggac gctctgtgcc agggcatggc agtgccatgt 2400 cccatcttga tgagcttctc tagccaccag gatgtatgcc ggagtccatg gagctagctt 2460 gctccatagg ctcagaccca agatctcggg atcaaggcta cacttgctgt aggttaggaa 2520 ggtgtttgcg ttcctgtgcc tgaaggaacg agagctgtta ctctcagtgc tagtgctgtt 2580 agcgtaggcc atcggacggc tgtggttgtg ctttgagatc cgaggtttct caaaactcta 2640 gctagacttc gcatcgaaat ccgccagcac ccgggcggct tttatagctg tcttatatgg 2700 gctgggccga aaggccggcc ggcatacaaa aggggatgcg aaga 2744 //