ID   GQ268227; SV 1; circular; genomic DNA; STD; VRL; 1368 BP.
XX
AC   GQ268227;
XX
DT   19-NOV-2010 (Rel. 106, Created)
DT   19-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Sweet potato begomovirus strain SPBV-D-DNA-[5], complete genome.
XX
KW   .
XX
OS   Sweet potato begomovirus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1368
RA   Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H.,
RA   Faria J.C., Ribeiro S.G.;
RT   "Detection, diversity analysis and cloning of Brazilian sweet potato
RT   geminiviruses using rolling circle amplification";
RL   Unpublished.
XX
RN   [2]
RP   1-1368
RA   Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H.,
RA   Faria J.C., Ribeiro S.G.;
RT   ;
RL   Submitted (13-JUN-2009) to the INSDC.
RL   LPP III, Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao
RL   Biologica, Brasilia, DF 70770-900, Brazil
XX
DR   MD5; d436b3ec3fe419bc19bf972255bfdbbf.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1368
FT                   /organism="Sweet potato begomovirus"
FT                   /host="sweet potato"
FT                   /strain="SPBV-D-DNA-[5]"
FT                   /isolate="CNPH 1043"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /clone="1043/4-03"
FT                   /note="defective genome"
FT                   /db_xref="taxon:450633"
FT   gene            72..348
FT                   /gene="V2"
FT   misc_feature    72..348
FT                   /gene="V2"
FT                   /note="nonfunctional V2 due to mutation"
FT   gene            complement(349..1198)
FT                   /gene="C1"
FT   misc_feature    complement(349..1198)
FT                   /gene="C1"
FT                   /note="nonfunctional Rep due to mutation;
FT                   replication-associated protein"
FT   gene            complement(784..1047)
FT                   /gene="C4"
FT   CDS             complement(784..1047)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:E5CYF0"
FT                   /protein_id="ACZ65972.1"
FT                   /translation="MKMGNLISTCYCSSKGTTNARISDSSTLYPHQGRLTFTPTSRELN
FT                   PAPMSSPTLTRTGIPSPGVNSRSTADLLEEASRLLMTQPQRL"
XX
SQ   Sequence 1368 BP; 355 A; 282 C; 340 G; 391 T; 0 other;
     accggtgccc gccgcgccct tttaaagtgg gccccacaat gggaccacgc gtctttgccg        60
     tactgtcttt aatgattact ttgctttata aggaccaatc aggtttccgt gcttgggcgc       120
     caagaatgga gcatttgtgg gaccctttgc agaacccact cccggatact ttatacggtt       180
     ttaggtgtat gctatccgta aaatacttgc agagtatttt gaagaaatac gagccaggaa       240
     ccttagggtt cgagctctgt tcggagttaa tccgtatatt cagggtcagg cagtatgaca       300
     gggcgaattc tcgtttcgcg gagatttcat ccatatgggg ggagaccgtg gattgccagt       360
     ccttctgggc ccccatgaat tccttaaagt gctttaggta ttgggggttg acgtcatcaa       420
     tgacgttata ccaagcactg ttgctgtata ctttagggct tagatctaaa tgcccacaca       480
     aataattatg aggccccaaa gacctggccc atactgtttt gcctattctg cttgggcctt       540
     caataacaat ggatatgggt ctatccggcc gcgcagcgga atccatgaca ttttcagcgg       600
     cccagtcgct gataatgtca ggaacggcat tgaaagaaga agatgaaaaa ggagaagaat       660
     atacagaagg aggaggagaa aaaatcctat ctaaattact aactaaattg tgaaattgaa       720
     acaaatattt ttcaggaagt ttctccttaa ttatttgcaa cgcagcttct ttagaacctg       780
     cgtttagagc ctctgcggct gcgtcattag cagtctgctg gcctcctcta gcagatctgc       840
     cgtcgacctg gaattcaccc caggtgatgg tatccccgtc cttgtcaacg taggacttga       900
     catcggagct ggatttagct ctctggatgt tggggtgaaa gtgagacgac cttgatgggg       960
     atacaaggtc gaagaatcgc tgattcgtgc attggtagtt cccttcgaac tgcaatagca      1020
     cgtggagatg aggttcccca ttttcatgca gctctctgca tatttttatg aattttttgt      1080
     tggtgggggt gttgagatta agaagctgct cgagagcttc ttctttggtt agagagcact      1140
     ggggatatgt aaggaaatag tttttggctt ttatattaaa acggcctgct ctaggcatgg      1200
     tgaaaaaagc aaatggtgga acacaaactt gctgaatgaa tcggtggaac ggtggacaat      1260
     ttatatgtgt ccaccaaatg gcattttggt aatttagaag atccttttag ctttaattca      1320
     aattccgaca gctctaggcc cacaaaaggc gggcaccgta ttaatatt                   1368
//