ID   GQ268226; SV 1; circular; genomic DNA; STD; VRL; 1376 BP.
XX
AC   GQ268226;
XX
DT   19-NOV-2010 (Rel. 106, Created)
DT   19-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Sweet potato begomovirus strain SPBV-D-DNA-[4], complete genome.
XX
KW   .
XX
OS   Sweet potato begomovirus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1376
RA   Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H.,
RA   Faria J.C., Ribeiro S.G.;
RT   "Detection, diversity analysis and cloning of Brazilian sweet potato
RT   geminiviruses using rolling circle amplification";
RL   Unpublished.
XX
RN   [2]
RP   1-1376
RA   Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H.,
RA   Faria J.C., Ribeiro S.G.;
RT   ;
RL   Submitted (13-JUN-2009) to the INSDC.
RL   LPP III, Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao
RL   Biologica, Brasilia, DF 70770-900, Brazil
XX
DR   MD5; 8bc78499b2321d859049fdb7ef50e43f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1376
FT                   /organism="Sweet potato begomovirus"
FT                   /host="sweet potato"
FT                   /strain="SPBV-D-DNA-[4]"
FT                   /isolate="CNPH 1239"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /clone="1239/5-05"
FT                   /note="defective genome"
FT                   /db_xref="taxon:450633"
FT   gene            98..160
FT                   /gene="V2"
FT   misc_feature    98..160
FT                   /gene="V2"
FT                   /note="nonfunctional V2 due to mutation"
FT   gene            complement(158..1222)
FT                   /gene="C1"
FT   misc_feature    complement(158..1222)
FT                   /gene="C1"
FT                   /note="nonfunctional Rep due to mutation;
FT                   replication-associated protein"
FT   gene            complement(162..219)
FT                   /gene="C2"
FT   misc_feature    complement(162..219)
FT                   /gene="C2"
FT                   /note="nonfunctional TrAp due to mutation; trans-activating
FT                   protein"
FT   gene            complement(808..1065)
FT                   /gene="C4"
FT   CDS             complement(808..1065)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:E5CYE9"
FT                   /protein_id="ACZ65971.1"
FT                   /translation="MGNLTSMCWCSSKVNSSAQIADSSTLSHPQGRITFTQTSRELNPR
FT                   PMSSPTLIRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL"
XX
SQ   Sequence 1376 BP; 349 A; 286 C; 333 G; 408 T; 0 other;
     accggtgccc gccgcgccct tttaaagtgg gccccacaaa tgcacaacgc gtttttcagt        60
     acttactttt aatgatgaca ttgctttata aggaccaatg ctgttccagt cttggtcgcc       120
     aagtatggct gaattgtggg accctttgca gaacccacta gcgtgcagtg gctcctggat       180
     gggacacttc ctcttgatcc cagaagggag attggacatc gcagaatata gcgtttgctg       240
     ttgcccaatt cttgagtgct ccttgctctg gtttgtctag ccagagttta aatgaggaac       300
     cctctcctgg attgcagagg aagatagtgg gaattccgcc tttaatttga actggctttc       360
     cgtatttaca gttggattgc cagtccttct gggcccccat gaattcttta aagtgcttta       420
     ggtattgggg gttgacgtca tcaatgacgt tataccaagc actgttgctg taaacttttg       480
     gactaagatc taaatgccca cacaaataat tgtgagggcc caaagacctg gcccatactg       540
     ttttgcctat tctgcttggg ccttcaataa caatggatat gggtctatct ggccgcgcag       600
     cggaatccat gacattttca gcggcccagt cgctgataat gtcaggaacg gcattgaaag       660
     aagatgaaga aaaaggtgaa gaatatacag aaggtggagg agaaaaaatc ctatctaaat       720
     tagaaactaa attatgatat tgaaataaat atttttcaga gagcttctcc ctgattattt       780
     gcaacgcagc ttctttagaa cctgcgttta gagcctctgc ggctgcgtcg ttagcagtct       840
     gctgacctcc tctagcagat ctgccgtcga cctggaattc accccaggtg agggtatccc       900
     cgtccttatc aacgtaggac ttgacatcgg acgaggattt agctccctgg atgtttgggt       960
     gaaagtgatt cgaccttgtg ggtgagacaa ggtcgaagaa tctgctattt gtgcagacga      1020
     atttaccttc gaactgcacc agcacatgga ggtgaggttc cccatcctcg tgcagttctt      1080
     tggctatgtg tatgtatttt ttgttggttg gggtttggat gtgtagtagt tgggctaggc      1140
     agtcctcttt agatagagaa cagcgtggat aagtaatgaa atagtttttt gaagaaattc      1200
     taaaacgttt gggcggatcc atttggtgac actcagactt tcaaatgaat tggtgactgg      1260
     tgacaattta tactatgtca ccaaatggca ttttggtaat ttagaagatc cttttagctt      1320
     taattcaaat tccgacaact ctgggtccac ctaaaggcgg gcaccgtatt aatatt          1376
//