ID GQ265901; SV 1; linear; genomic RNA; STD; VRL; 6185 BP. XX AC GQ265901; XX DT 13-JUL-2010 (Rel. 105, Created) DT 13-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Hydrangea ringspot virus isolate Hyd-CZ, complete genome. XX KW . XX OS Hydrangea ringspot virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6185 RX DOI; 10.1111/j.1439-0434.2009.01649.x. RX AGRICOLA; IND44396294. RA Gadiou S., Cervena G., Kundu J.K.; RT "The Sequence of the Genome of an Isolate of Hydrangea Ringspot Virus from RT the Czech Republic"; RL J. Phytopathol. 158(7-8):569-571(2010). XX RN [2] RP 1-6185 RA Gadiou S., Cervena G., Kundu J.K.; RT ; RL Submitted (15-JUN-2009) to the INSDC. RL Department of Virology, Crop Research Institute, Drnovska 507, Prague 6 RL 16106, Czech Republic XX DR MD5; 0a27c8a4be1eb0d1145070b4abaa5392. DR EuropePMC; PMC4816604; 27034476. XX FH Key Location/Qualifiers FH FT source 1..6185 FT /organism="Hydrangea ringspot virus" FT /host="Hydrangea sp." FT /isolate="Hyd-CZ" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /db_xref="taxon:112228" FT CDS 96..4256 FT /codon_start=1 FT /product="viral replicase" FT /note="ORF-1" FT /db_xref="GOA:D8UY81" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:D8UY81" FT /protein_id="ADE10202.1" FT /translation="MSRVSQVLASISDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPS FT ETAEFLERQGIISDPYAVAAHTHAAAKCLELDLYASVSHYMPKENPVTFLFMKRAKLQY FT FRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLF FT DRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQL FT QWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFL FT PTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGEL FT LPPHLEARFSHLLRCILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDIT FT FTEQVMAYHTGSTWERFLGGSFKALPLGNELGPGLPEELRAEVARYYGNALLTGLDETD FT PKAEAFALLCNNPHGTTLFAPHTTAPEEDITHRVLALKVPHGSPPPGFGGPSSAAQPEQ FT EKEVARPATPPEQEKQPEGQKMITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHD FT NSVIMPITNIVSGLPISQIQGHELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTG FT ALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLP FT TNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVE FT LVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSE FT KEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDT FT VMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLP FT NADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLF FT PHQQAKDEALLWETIKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFS FT EDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKI FT KAGQTIASFQQHAVMLYGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKP FT ASYANDFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLT FT GEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEA FT KPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQATSGSKKELVEAAGNYERD FT VGLAYALKDSLYEILSPEQAELHQETVRTLVKLTKGTYLATLE" FT CDS 4259..4957 FT /codon_start=1 FT /product="triple gene block protein" FT /note="ORF-2" FT /db_xref="GOA:D8UY82" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:D8UY82" FT /protein_id="ADE10203.1" FT /translation="MDTLVSELQRLGYTRTNLPLSRPLVIHAVAGAGKSTLLRHLLTLP FT QPFYVQTHGIPDPPNLSQRYIRPANVPLSNHFNILDEYLRSQSKDPGTPSSRTPSNTQK FT TASPHFTRNVTHRFGPDTCSLLSSLGIDIVSAPDSEQDTLTLSPIFEGTLQGQILALDA FT NCARLLEAHGVPFLCPRKVLGLEFPVVTVVSLSPLKQHPSPQELYIALTRHRKELHVLA FT PPPYPSSRPH" FT CDS 4914..5258 FT /codon_start=1 FT /product="triple gene block protein" FT /note="ORF-3" FT /db_xref="GOA:D8UY83" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:D8UY83" FT /protein_id="ADE10204.1" FT /translation="MSSPLRLTPPPDPTKALIPAVVGFSVAAAIFLLTRSTLPHTGDNI FT HSLPHGGRYRDGTKSVDYCSPHRDPFRPTQLHAALLVLALLALIHLSGCLHRRPRPDIP FT CSCPAHPPPP" FT CDS 5143..5364 FT /codon_start=1 FT /product="triple gene block protein" FT /note="ORF-4" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q5DKR0" FT /protein_id="ADE10205.1" FT /translation="MPPSSSSHSWPSSTSLAVFTAALVLTFLALALLTPPPPKCFVRVS FT GAEATLSGDCSTLSPEALRHLKPHSHRC" FT CDS 5389..6066 FT /codon_start=1 FT /product="coat protein" FT /note="ORF-5" FT /db_xref="GOA:D8UY85" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:D8UY85" FT /protein_id="ADE10206.1" FT /translation="MTTTTTTNPIPPRVGTSTPSAAFAPLSQEVLETLSFPVTSNLVPS FT PTELAAIADAWTTLGVPAAETTKHALALVNFCFDSGSSATTRFTGASPTPAIPLSALAG FT AVLELVPIRKFCRYFAQYIWNARLTANAPPASWEAWNFPENEKFAGFDFFDGVLNTASL FT KPPQGLVRKPTEAERVANATAKSLHLFEAATQRSNLASTATQFTRGRLTDTSPTIQFLP FT APE" FT CDS 5549..6022 FT /codon_start=1 FT /product="unknown" FT /note="virally coded protein; ORF-6" FT /db_xref="UniProtKB/TrEMBL:D8UY86" FT /protein_id="ADE10207.1" FT /translation="MPGPPSESRRQKRPNTPSLWSTSVSTRALPQPPASLEPPPPQPSP FT CPPWPEPFWSWYPSESSAGTSPSTFGTLASPPTPPRPHGKLGISQRMRSLPASTSSTGS FT STRPPSSHPRGSSESPRKQNGSPTQPPSPSTSSRQPPSAPTSRPPPPSLPVVD" XX SQ Sequence 6185 BP; 1505 A; 2194 C; 1399 G; 1087 T; 0 other; gaaaagttcc acacccaaac caaaccaaaa cctaacgaaa gagcatattg gaccctaaac 60 ggccctcgag cgaccacgtg tctagaggaa ccattatgtc tcgcgttagc caagtacttg 120 catccatctc agacccctcc ctcaaggcgg tcatccaaga agaggcctac aaatccatcc 180 ggaccacact tcaagccgcc aaacatctca acccctacgc tcatccatca gagactgccg 240 agtttctaga gcgccagggc atcatttcag acccatacgc cgtcgcggcc cacacccatg 300 cagcagccaa gtgcttggag ctggacctgt acgcgagcgt atcgcactac atgcccaagg 360 agaaccccgt aacattcctc ttcatgaagc gggcgaaact ccaatatttc cgaagaggaa 420 cccaacaagg agacgtcttt gtcaacaccc tcttcgagcc caaggatgct gcccgatacc 480 cattagatac gatctgcagc gccattcccc caatccaaac acagatggca ttcatgggag 540 acacgctaca cttcctggag ccagcgttcc tcacagacct cttcgaccgc tccccgcacc 600 taaacactct ctatgccacc atggtgctgc caccagaggc aaagcacaaa ctccgctccc 660 tccacccctt ggtctacaca ttgcaatacc tcaaagacca cttcatatac ctccccggag 720 gacacgccgg ggcctcctac tgccacacgt attcacagct tcagtggctg gacgtaggac 780 acatcgtttc accgtcaggg aactgcatca ctgcccaacg gatcgaaacc aaagcggcga 840 accacctctt cgtgttcatt agaggacgcc tcaacacccc ccccatgaga tctttcgcac 900 caatgcgggc atactgcaca ctccccgcaa tcttcctccc cacagagttt aactcccgga 960 cgccctacac caaaaccttc ctccaacaga tgtttctcta cctgaaaagc atcaagaagc 1020 ccactgagac cgacctgtac gccaagttcc ggcagctaac gaagaccgac gacctccaag 1080 aactggaccc aaagagatca cactatggtg aactacttcc tcctcatctc gaggctcgat 1140 tcagtcacct gcttcgatgc attctctcag ggtcggcact ccggaggctg ctcaagcccc 1200 tcatctgttg gatggagaaa atgagacaga ccatcttcgg ccgagaggag ttcgtgagac 1260 tcatgaaggc cctcgagtgg acggacatca ccttcaccga gcaagtgatg gcctaccaca 1320 cgggaagcac gtgggaaaga tttttgggag gcagcttcaa agcgctcccc ctcggaaacg 1380 agctcggtcc aggcctcccc gaggagctac gggcagaagt ggcaaggtac tacggcaacg 1440 ccctcctcac gggactggac gagactgacc ccaaggccga agcctttgcc ctcctatgca 1500 acaaccccca cgggaccacg ctcttcgccc cgcacaccac agcccccgag gaggacatta 1560 cccaccgagt cttggcgctg aaagtcccgc acggctcccc cccccccggg ttcggaggcc 1620 ccagcagtgc ggcccagcca gagcaggaga aggaggtggc cagacccgcc actccgccgg 1680 agcaggagaa acagccagaa ggccaaaaga tgatcacccg gcctgtctcc acgctcgaag 1740 acgcccttcc ctggaacaaa tggaccccga tactccgggg acttgggttc caggcccgag 1800 aaatccaaag gagcccgcat gacaattcag ttatcatgcc aatcacgaac atcgtcagcg 1860 gcctcccaat aagccaaatt caggggcacg aactggttat gggagtcctt gagaagctct 1920 cacgcaaacc gaccccatgg accccctgcc ccctccgagc ccggtcctac acctcagaca 1980 tcaaaaacca caggacggga gcgcttctcc tcaaggaaag cgccacctgg aaggagaccc 2040 aaaccctcaa agcggagagg ttggagaaaa cggtagggct ctcagtgatc cacggatgcg 2100 gcggctcagg caagtccttc gctttccagg aattgctaag gcaacacccg gatgtggatc 2160 ttcaggtagt cctgcccacg aacgagctcc gactcgactg gatggccaag gccccgaaag 2220 taaggccaga aaagatcaaa acctacgagc gggcgttcac tggagtctca tcgccggtgg 2280 tcctcttcga cgactacggc aaactgccag ccggctacat cgaagcctat gtggcagtgc 2340 agactagagt ggaactcgta atcctcacgg gagacgcgag acagagcacc caccatgaga 2400 acaacgaaca ggccatgatc tcccaactcg cccctgccac cgaagtgttc caaccccttt 2460 gccgctacta catcaatgcc actcatcgaa acaagaggga cctcgccaac aaactggagg 2520 tttactccga aaaggagggg gagaccaaga taaccatggg gttccaaccc atcaaggacc 2580 ttcacctcct cgtgccctcc ctcctaaaga agtcagccta cggcgagatg ggacacaagg 2640 tctccaccta cgcgggctgc caaggcatta ccgccccaaa gatccaaata ctgctggaca 2700 atgacacggt catgtgctcc aaggaggtac tctacacagc actgtccagg gcggtccact 2760 ccatacactt catcaacaca gggccaacgc acagctcctt ctgggagaaa cttgaggcca 2820 caccctactt gaaagccttc ctgagcacgg tcagagagga ggccattgcg gcgcaccagc 2880 tgccgaacgc ggaccccagg ccagacccag agcccaagac gcacttcccg gtggaaaaca 2940 catcgtgcgc gctcggggct tacatggaaa aagtgcctga gaagttcgaa cgggagatct 3000 tcacggagga ccggggccac accaactgcg tacagacaca aaaccccttg gttcagctct 3060 ttccccatca gcaggccaag gacgaagccc tcctttggga gacaatcaag gccaggctga 3120 caataagcag ccccgaagcg aactgggagg agttctacag gaagaaggac atcggggaca 3180 tcctctggct gcactacaag aaggccatga cccttccaga ggagccactt cccttctcag 3240 aggacctctg gaggctgtcc gcagccgagg tgcagaacac ctacctctcc aagcctatga 3300 acatgctcaa aaacggcgag aggagacaat ccccagactt cgagaaacac caaatcttgc 3360 tcttcctcaa gtcacagtgg gtgaagaaga tggagaagct aggcggaccc aaaatcaagg 3420 ccgggcaaac catagcctca ttccaacaac acgccgtcat gctgtacgga acaatggcca 3480 ggtacatgag gaggttccgg gaagtcttgg gcccaaacca catcaagatc aactgcgagg 3540 ccaccccaaa ggatctttcc cgctttatcc aaaactactg ggacttcaag ccagcgtcct 3600 acgctaatga cttcaccgcc ttcgaccaat cccaggacgg ggcaatgctc cagttcgaga 3660 tcctcaaagc caaacacttc aacatcccgg aggagatcat ccaaggatac ctggacatca 3720 agctgaacgc aaagatcttc cttggagtct taggcatcat gagacttaca ggtgagggac 3780 cgaccttcga cgctaacact gaatgcaaca tcgcctacac gcacacaagg tttgacatcc 3840 cgccaggcac ggcacaactc tatgctggag atgactccgc gatcgcttgc gtgccacccg 3900 agagaccctc cttcaagctg atcgcgaaat cacttgccct ggaggccaag ccagtatacg 3960 ccccacaagt cgccggggct tgggcagagt tctgcggcta tctcatcact ccaaagggcc 4020 tcatcaagga cccggctaaa ctctttgcct ccctcaaact gctccaagca acttcgggaa 4080 gcaagaaaga gctcgtagaa gcggctggca attatgagag agacgtcggc ctggcctatg 4140 ccctaaagga ctccctgtac gaaattctct ccccagagca agcggaactc caccaggaaa 4200 cggttagaac cttagttaag ctgactaagg ggacctacct ggccactctc gaatagtgat 4260 ggacaccttg gtgagtgagc ttcaaagact cggatacact aggaccaacc tccccctctc 4320 ccgccccctc gtcattcacg cagtagcagg cgccggaaag tctaccctcc tccgacactt 4380 actcaccctc ccacaaccct tctacgtgca gacccacgga atcccggacc cccccaacct 4440 gagccagaga tacattcgac cggccaacgt tcccctctcc aaccacttca acatcctcga 4500 cgagtacctg cggtcccagt caaaggatcc tgggacgccc tcatcgcgga ccccctccaa 4560 cacccagaaa actgcctccc cccacttcac ccgcaacgta acccaccgat tcggcccgga 4620 cacctgctcc ctcctctcct ccctcggcat tgacatagtt agcgccccgg actcggagca 4680 ggacaccctc acgctcagcc ccatcttcga aggcactctg caaggccaga tcctcgcgct 4740 cgacgctaac tgcgcacgcc tcctcgaggc ccacggcgtc ccgtttctgt gccccaggaa 4800 ggtcctcggc ttggagttcc ccgttgtcac ggtcgtctcc ctctccccat tgaaacagca 4860 ccccagcccc caggagctct acatcgccct aacccgccat cgcaaggagc tccatgtcct 4920 cgcccctccg ccttacccct cctcccgacc ccactaaagc cctcatccca gcagtagtcg 4980 gattctcggt cgcggcagcc atcttccttc tcacccgctc caccctcccc cacaccggcg 5040 acaacatcca cagcctccct cacgggggcc gctaccggga cggcaccaaa tctgtggact 5100 actgctcacc ccaccgagac cccttcagac ccacccaact gcatgccgcc ctcctcgtcc 5160 tcgcactcct ggccctcatc cacctctctg gctgtcttca ccgccgccct cgtcctgaca 5220 ttccttgctc ttgccctgct cacccccccc ccccctaagt gcttcgtccg agtctcagga 5280 gccgaggcca ccctctcagg agactgctcc acgctctccc cggaggccct caggcacctt 5340 aagccccact cgcacaggtg ttaagttcac caaactcccg aaatccaaat gacaaccacc 5400 acaaccacca acccgatccc cccgcgagtt gggactagca ccccttcagc ggcattcgcc 5460 cccctctccc aggaggtcct ggagactctc agtttcccgg taacttccaa cctcgtcccc 5520 tcccccacag agctcgcagc catagccgat gcctggacca ccctcggagt cccggcggca 5580 gaaacgacca aacacgccct cgctctggtc aacttctgtt tcgactcggg ctcttccgca 5640 accacccgct tcactggagc ctcccccacc ccagccatcc ccctgtccgc cctggccgga 5700 gccgttctgg agctggtacc catcagaaag ttctgcaggt acttcgccca gtacatttgg 5760 aacgctcgcc tcaccgccaa cgcccccccg gcctcatggg aagcttggaa tttcccagag 5820 aatgagaagt ttgccggctt cgacttcttc gacggggtcc tcaacacggc ctccctcaag 5880 ccaccccagg ggctcgtcag aaagcccacg gaagcagaac gggtcgccaa cgcaaccgcc 5940 aagtccctcc acctcttcga ggcagccacc cagcgctcca acctcgcgtc caccgccacc 6000 cagtttaccc gtggtagact gacggacacg agcccaacta tccagttcct tccggcacca 6060 gaataatttc ttttctttcc atgcacgccc gtcaccgttg ttcccacttg ttgggtgaca 6120 tgtcggcttc aagtggtttc ccccaactta atgtggggct ttgttttaca gttcctttca 6180 aattt 6185 //