ID GQ259480; SV 1; linear; genomic RNA; STD; VRL; 4612 BP. XX AC GQ259480; XX DT 14-OCT-2009 (Rel. 102, Created) DT 14-OCT-2009 (Rel. 102, Last updated, Version 1) XX DE Carnation Italian ringspot virus isolate RSG replication-associated protein DE 2, replication-associated protein 1, coat protein, movement protein, and DE silencing suppressor genes, complete cds. XX KW . XX OS Carnation Italian ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4612 RX DOI; 10.1007/s00705-009-0491-9. RX PUBMED; 19768632. RA Koenig R., Lesemann D.E., Pfeilstetter E.; RT "New isolates of carnation Italian ringspot virus differ from the original RT one by having replication-associated proteins with a typical RT tombusvirus-like N-terminus and by inducing peroxisome- rather than RT mitochondrion-derived multivesicular bodies"; RL Arch. Virol. 154(10):1695-1698(2009). XX RN [2] RP 1-4612 RA Koenig R.; RT ; RL Submitted (11-JUN-2009) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX DR MD5; 0b1dd13d668e51b26e2f56bf472e6ee2. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4612 FT /organism="Carnation Italian ringspot virus" FT /host="sweet cherry tree" FT /isolate="RSG" FT /mol_type="genomic RNA" FT /db_xref="taxon:39443" FT CDS 142..2598 FT /codon_start=1 FT /transl_except=(pos:1030..1032,aa:OTHER) FT /product="replication-associated protein 2" FT /note="P1-RT; readthrough of stop codon" FT /db_xref="GOA:D0E2U9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D0E2U9" FT /protein_id="ACX53291.1" FT /translation="METIKRMIWPKKEIFVGEFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYNGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK FT WDRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLGKLLDWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER FT RNLKQVQKTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVEKFYSRFTLYDTPRKHQRIDTVTN FT VHKWRGSGGSHVVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 142..1032 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="P1" FT /db_xref="GOA:D0E2V0" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D0E2V0" FT /protein_id="ACX53290.1" FT /translation="METIKRMIWPKKEIFVGEFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 2610..3770 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D0E2V1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D0E2V1" FT /protein_id="ACX53292.1" FT /translation="MTMVLRNPGTMVPQGGNKMSKMAKNAFQQGLQAGAAYLMSNPKGA FT LKKGKDAWNYMTAGGVPSGIVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSH FT RELITQVNNSTQFVVNGGVTGNLRQVNPLNGTLFSWLPSIAANFDQYTFNSVTLHYVPL FT CATTETGRVAMYFDKDSEDLEPADRVELANYATLKETAPWAEAMLRIPTDRIKRYNDDS FT SVNDRKLIDLGQIGIATYGGSGTNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLD FT TNVGPSYTITSSTATVYTVAFRTVGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTA FT GTAFSYMTNVTVSALPASITFTVVGVITSSTSHAVRASRTNNADLI" FT CDS 3805..4374 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D0E2T2" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:D0E2T2" FT /protein_id="ACX53293.1" FT /translation="MDTEYEQVNKPWNELYKETKLGNKLMVNVGMEDQEVPLLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKALKPSKKKASKTDSSV" FT CDS 3837..4355 FT /codon_start=1 FT /product="silencing suppressor" FT /db_xref="GOA:D0E2V3" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:D0E2V3" FT /protein_id="ACX53294.1" FT /translation="MERAIQGNQAREQANGERWDGGSGGTTSPFKLSDESPSWTEWRLH FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTETSLHRVLGSWTGNSVNYAASRFFG FT VNQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG FT AEAFEEESE" XX SQ Sequence 4612 BP; 1235 A; 946 C; 1254 G; 1177 T; 0 other; agttcgttta tctggtgact tgcgctattc gttgctttgc gtagggaatt tctctccacg 60 actactatct ttagttttgg ggtttgaagg ttgggtctac ctttcggggg gataaagtgt 120 aacttccaac aaataagcga catggagacc atcaagagaa tgatctggcc taagaaggag 180 attttcgtag gagaattcgc gatcggagtt aataggacgg caccggtgga catcttccaa 240 ttggtgtgtc gtgtggttct aagatacatg aggacaggga aaatagagtg tgattctgac 300 agcatgacta agtttatagt tgaattacta aaaactgatt gtgctgccaa gtgggagtgg 360 tttatgaaga gacggcagag gggtgactat gttgtccctc tatctatagc tgctatccca 420 atcataccgc tactgagtta tgccactagg gtacgcgcag tctcagtcaa ggcttttggc 480 aatgagcttt cgttcaatgt cagagtgcct agaccgtctg tacctaagaa gggcttactc 540 cttagactgg cggcaggtct agcgttagca cctatatgcg cgctggcagt gtacgctacc 600 ctacccaggg aaaaactgtc ggtatttaag ctgaggaccg aagcacgtgc acacatggag 660 gatgagagag aagcgactga ttgtttggtg gttgagccgg cacgggaact taagggtaag 720 gatggtgagg atctcctcac tggtagtaga ttaactaagg tgatcgcgtc cacggggcgc 780 cctcgcagaa ggccttatgc agctaaaatt gcacaggtcg cgagagctaa ggtgggttac 840 cttaagaata gtcctgagaa tagactaatc taccagcgag tgatgattga gatcatggac 900 aaagactgcg ttaggtatgt tgacagggat gtcatattgc ctttggctat tggatgctgt 960 tttgtctatc cggatggagt ggaggagtcg gcggcactat ggggttctca ggaatccctt 1020 ggtgtcaaat agggaggcct agtacgtcta cctggggttg taacacagat caatcgagat 1080 atcccatctg atgtgttact tccccaggag gtgctagagg ttcgtacagg acctcccaat 1140 gctaaggacc gtaatatatt tatggttgca ggttgcccat cacaggcacg gttcttagta 1200 cataatcact gcctgaaaaa ccttaaaagg ggtcttgtgg agagagtctt ctgcgtagag 1260 agaaacggga agctcgctcg cactccacaa cctaccaaag gagcctttgg acgtctttcc 1320 ccgttcagga aagcagtttg tgagaaggtt ggagttgccc accgacttgg gtatgatgga 1380 tttctgtcat attacaacgg tgcgaagctc cgtacttaca cacgagctgt ggagagtctg 1440 catatcactc ctgtctcgga gagggatagt cacctgacta ccttcgtcaa ggcggagaag 1500 atatcgacgt ctaaaggtga cccagcacct agggtgattc agcctcgaaa ccctaggtac 1560 aatgtcgaac ttggaagata tctacggcat atggaatcca agctgatgaa agctgttgat 1620 ggcgtgttcg gagaaacgac gtgcatcaaa ggatatacag ccgacgaggt gggtgcaatt 1680 tttcgggaga agtgggatag gtttgataaa cctgtcgcta ttggtcttga tgcatccagg 1740 tttgatcaac actgttccgt ggaggctttg caatttgagc atagcttcta cagggccatg 1800 taccctggca acaagctctt gggcaagttg ttggactggc aactccataa caaagggaaa 1860 ggttatgttc ctgatggaac tataacatac cgtaaggagg ggtgccgcat gagtggggat 1920 ataaacactt cgttaggtaa ctatctattg atgtgcgcaa tggtacacgg gtacatgcgc 1980 catttgggga ttaatgagtt tagtctggca aactgtgggg atgattgtgt tcttatattg 2040 gaacgcagga atcttaagca ggtacagaag actctaccag agtatttcct taatctagga 2100 tatactatga aggtggagcc gcctgtattt caattggaag aggttgaatt ttgccaggca 2160 caccccgtac agtttcaagg tggttggaag atggtccgca atgtccgtac cgcaatgagc 2220 aaggatgtgc actgtgttaa taatatacgc gatctggcga cgaggagagc atggagtaat 2280 gcccaacacc atggtggact agcacttagt gctggcatac ctgtggttga gaagttctac 2340 tctaggttca cattgtatga tacacctcgc aagcatcaac gtattgacac agtcaccaac 2400 gttcataagt ggcgtggatc tggtggaagt catgttgtga cccctgaatc tagggctagc 2460 ttttgggctg cctttggttt aacgggggat gagcaactgg ctttggagga ccgtttagat 2520 agatgggaga tggatctatt tggagaggag ggtgttgacg ctcacgagcc cagcattctc 2580 gactccgccg tagcttgacc aagcaagaca tgacaatggt actaagaaat ccaggcacaa 2640 tggtgcctca aggcggcaac aaaatgagta agatggcgaa gaatgcattt caacaaggat 2700 tacaagcagg ggctgcttat ttgatgagca accccaaggg ggcattaaag aaagggaaag 2760 acgcatggaa ttacatgaca gcagggggtg tgccaagtgg tatagtacac tcagggggaa 2820 tgaaaggcgc gataatggcg cccgtggcag ttaccagaca gttaaggggg agtaaaccta 2880 aattctccgg aagaacatct ggttccgtga cagtgagtca tagagagcta attacgcaag 2940 tgaacaactc aacgcagttt gtggttaatg gtggtgttac tggtaacctt aggcaagtta 3000 atcccttgaa tgggaccttg ttctcatggc tgcctagcat tgccgctaac tttgatcagt 3060 acacatttaa tagtgttacg ttgcattacg tacctttatg tgctactacc gagactgggc 3120 gagttgcaat gtattttgac aaagattccg aggaccttga gcccgcggac agagtagagc 3180 ttgctaatta tgctacattg aaagaaactg caccatgggc cgaggctatg ttacgtatac 3240 ccactgatcg catcaaacgg tataacgatg acagcagcgt aaatgatcgc aaactgattg 3300 acctgggaca aataggtatt gcaacatatg gtggttcggg cacaaaccct gtcggggatg 3360 tgttcatatc ttacagtgtt actctacact tcccacaacc cactgcagcc ggcgtacaga 3420 cacggcgtct tgatctcaca agtgttttag acacgaatgt cggacctagt tacactatca 3480 catccagtac ggccacggtg tacacagtcg cttttcgcac tgtgggcact tttatgctgt 3540 ttggagctgt gaggtctact gggtcacccg ttatcggact gtccagtgca aatattgcta 3600 tcaacagcaa taccacgttg aatacagccg gtactgcttt ctcctacatg acgaacgtga 3660 cggtgtcggc tctgccagca tccatcacgt tcactgtagt tggagtgatc acttcgtcaa 3720 cttcacatgc cgtgagagca tcccgtacta ataacgcaga cctgatatag taccattgag 3780 gggcctcttg aacaagacca gttcatggat actgaatacg aacaagtcaa taaaccatgg 3840 aacgagctat acaaggaaac caagctaggg aacaagctaa tggtgaacgt tgggatggag 3900 gatcaggagg taccacttct cccttcaaac tttctgacga aagtccgagt tggactgagt 3960 ggcggctaca taacgatgag acgaattcga atcaagataa tccccttggt ttcaaggaaa 4020 gctggggttt cgggaaagtt gtatttaaga gatatctcag atacgacagg acggaaactt 4080 cattgcacag agtccttgga tcttggacgg gaaattcggt taactatgca gcatctcgat 4140 ttttcggtgt caaccagatc ggatgtacct atagtattcg gtttcgagga gttagtgtca 4200 ccatttctgg agggtcgaga actcttcagc atctctgtga gatggcaatt cggtctaagc 4260 aagaactgtt acagcttacc ccagtcgaag tggaaagtaa tgtatcaaga ggatgccctg 4320 aaggcgctga agccttcgaa gaagaaagcg agtaagacag actcttcagt ctgagtttgc 4380 ggaaatgagt gtaaatctgg catagcatac aggttactct tgttgggttc tagatgttat 4440 gatgacgagt cggacggact ccgcactagg tttggtcgcc taggggatgg aggtatggaa 4500 agggtctcgt gtgctgttag tcggtcgaaa gacgcgcttg caacatgggc ctatatccgg 4560 ataagtcata gcaatactag ccaacatgaa ttggttagat tcaagaagcc ca 4612 //