ID GQ259479; SV 1; linear; genomic RNA; STD; VRL; 4612 BP. XX AC GQ259479; XX DT 14-OCT-2009 (Rel. 102, Created) DT 14-OCT-2009 (Rel. 102, Last updated, Version 1) XX DE Carnation Italian ringspot virus isolate OE14 replication-associated DE protein 2, replication-associated protein 1, coat protein, movement DE protein, and silencing suppressor genes, complete cds. XX KW . XX OS Carnation Italian ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4612 RX DOI; 10.1007/s00705-009-0491-9. RX PUBMED; 19768632. RA Koenig R., Lesemann D.E., Pfeilstetter E.; RT "New isolates of carnation Italian ringspot virus differ from the original RT one by having replication-associated proteins with a typical RT tombusvirus-like N-terminus and by inducing peroxisome- rather than RT mitochondrion-derived multivesicular bodies"; RL Arch. Virol. 154(10):1695-1698(2009). XX RN [2] RP 1-4612 RA Koenig R.; RT ; RL Submitted (11-JUN-2009) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX DR MD5; d494f888a06a06e4ce20a70c5e602fc9. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4612 FT /organism="Carnation Italian ringspot virus" FT /host="sweet cherry tree" FT /isolate="OE14" FT /mol_type="genomic RNA" FT /db_xref="taxon:39443" FT CDS 142..2598 FT /codon_start=1 FT /transl_except=(pos:1030..1032,aa:OTHER) FT /product="replication-associated protein 2" FT /note="P1-RT; readthrough of stop codon" FT /db_xref="GOA:D0E2T9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D0E2T9" FT /protein_id="ACX53286.1" FT /translation="METIKRLIWPKKEIFVGEFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYNGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK FT WDRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLGKLLDWQLHNRGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER FT RNLKQVQKTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVEKFYSRFTLYDVPRKHQRIDTVTN FT VHKWRGSGGSYVVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 142..1032 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="P1" FT /db_xref="GOA:D0E2U0" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D0E2U0" FT /protein_id="ACX53285.1" FT /translation="METIKRLIWPKKEIFVGEFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 2610..3770 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D0E2U6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D0E2U6" FT /protein_id="ACX53287.1" FT /translation="MTMVLRNPGTMVPQGGNKMSKMAKNAFQQGLQAGAAYLMSNPKGA FT LKKGKDAWNYMTAGGVPSGIVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSH FT RELITQVNNSTQFVVNGGVTGNLRQVNPLNGTLFSWLPSIAANFDQYTFNSVTLHYVPL FT CATTETGRVAMYFDKDSEDLEPADRVELANYATLKETAPWAEAMLRIPTDRIKRYNDDS FT SVNDRKLIDLGQIGIATYGGSGTNPVGDVFISYSVTLHFPQPTAAGVQTQRLDLTSVLD FT TNVGPSYTITSSTATVYTVAFRTVGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTA FT GTAFSYMTNVTVSALPASITFTVVGVITSSTSHAVRASRTNNADLI" FT CDS 3805..4374 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D0E2U2" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:D0E2U2" FT /protein_id="ACX53288.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLMVNVGMEDQEVPLLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKALKPSKKKASKTDSSV" FT CDS 3837..4355 FT /codon_start=1 FT /product="silencing suppressor" FT /db_xref="GOA:D0E2U3" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:D0E2U3" FT /protein_id="ACX53289.1" FT /translation="MERAIQGNDAREQANGERWDGGSGGTTSPFKLPDESPSWTEWRLH FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTETSLHRVLGSWTGNSVNYAASRFFG FT VNQIGCTYSIRFRGVSVTISGGSRALQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG FT AEAFEEESE" XX SQ Sequence 4612 BP; 1234 A; 944 C; 1255 G; 1179 T; 0 other; agttcgttta tctggtgact tgcgctaatc gttgctttgc gtagggaatt tctctccacg 60 actactatct ttagttttgg ggtttgaagg ttgggtctac ctttcggggg gataaattgt 120 aactgccaac aaataagcga catggagacc atcaagagac tgatctggcc taagaaggag 180 attttcgtag gagaattcgc gaccggggtt aataggacgg caccggtgga catcttccaa 240 ttggtgtgtc gtgtggttct aagatacatg aggacaggga aaatagagtg tgattctgac 300 agcatgacta agtttatagt tgaattacta aaaactgatt gtgctgccaa gtgggagtgg 360 ttcatgaaga gacggcagag gggtgactat gttgtccctc tatctatagc tgctatccca 420 atcataccgc tactgagtta tgccactagg gtacgcgcag tctcagtcaa ggcttttggc 480 aatgagcttt cgttcaatgt cagagtgcct agaccatctg tacctaagaa gggtttactc 540 cttagactgg cggcaggcct agcgttagca cctatatgcg cgctggcagt gtacgctacc 600 ctacccaggg aaaaactgtc ggtatttaag ctgaggaccg aagcacgcgc acacatggag 660 gatgagagag aagcgactga ttgtttggtg gttgagccgg cacgggaact taagggtaag 720 gatggtgagg atctcctcac tggtagtaga ttaactaagg tgattgcgtc cacggggcgc 780 cctcgcagaa ggccttatgc agctaaaatt gcacaggtcg cgagagctaa ggtgggttac 840 cttaagaata gtcctgagaa tagactaatc taccagcgag tgatgattga gatcatggac 900 aaagactgcg ttaggtatgt tgacagggat gtcatattgc ctttggctat tggatgctgt 960 tttgtctatc cggacggagt ggaggagtcg gcggcactat ggggttctca ggaatccctt 1020 ggtgtcaaat agggaggcct agtacgtcta cctggggttg taacacagat caatcgagat 1080 atcccatctg atgtgttact tccccaggag gtgctagagg ttcgtacagg acctcccaat 1140 gctaaggacc gtaatatatt tatggttgca ggttgcccat cacaggcacg gttcttagta 1200 cataatcatt gcctgaaaaa ccttaaaagg ggtcttgtgg agagagtctt ctgcgtagag 1260 agaaacggga agctcgctcg cactccacaa cctaccaaag gagcttttgg acgtctttcc 1320 ccgttcagga aagcagtttg tgagaaggtt ggagttgccc accgacttgg gtatgatgga 1380 tttctgtcat actacaacgg tgcgaagctc cgtacttaca cacgagctgt ggagagtctg 1440 catatcactc ctgtctcgga gagggatagt catctgacta ccttcgtcaa ggcagagaag 1500 atatcgacgt ctaaaggtga cccagcacct agggtgattc agcctcgaaa ccctaggtac 1560 aatgtcgaac ttggaagata tctacggcat atggaatcca agctgatgaa agctgttgat 1620 ggcgtgtttg gagaaacgac gtgcatcaag ggatatacag ccgacgaggt gggtgcaatc 1680 tttcgagaga agtgggatag gtttgataaa cctgttgcca ttggtctcga tgcatccagg 1740 tttgatcaac actgttccgt ggaggctttg caattcgagc atagcttcta cagggccatg 1800 taccctggca ataagctcct gggcaagttg ttggactggc aactccataa tagagggaaa 1860 ggttatgttc ctgatggaac tataacatac cgtaaggagg ggtgccgcat gagtggggat 1920 ataaacactt cgttaggtaa ttatctattg atgtgcgcaa tggtacacgg gtacatgcgc 1980 catttgggga ttaatgagtt tagtctggca aactgtgggg atgattgtgt tcttatattg 2040 gaacgcagga atcttaagca ggtacaaaag actctaccag agtatttcct taatctagga 2100 tatactatga aggtggagcc gcctgtattt caattggaag aggttgaatt ttgccaggca 2160 caccccgtac agtttcaagg tggttggaag atggtccgca atgtccgtac cgcaatgagc 2220 aaggacgtgc actgtgttaa caatatacgc gatttggcga cgaggagagc atggagtaat 2280 gcccaacacc atggtggatt agcacttagt gctggcatac ctgtggttga gaagttttac 2340 tccaggttta cattatatga tgtacctcgc aaacatcaac gtattgacac agtcaccaac 2400 gttcataagt ggcgtggatc tggtggaagt tatgttgtga cccctgaatc tagggctagc 2460 ttttgggctg cctttggttt gacgggggat gagcaactgg ctttggagga tcgtctggat 2520 agatgggaga tggatctatt tggagaggag ggtgttgacg ctcacgagcc cagcattctc 2580 gactccgccg tagcttgacc aagcaagaca tgacaatggt actaagaaat ccaggcacaa 2640 tggtgcctca aggcggcaac aaaatgagta agatggcgaa gaatgcattt cagcaaggat 2700 tacaagcagg ggctgcttat ctgatgagca accccaaggg ggcattaaag aaagggaaag 2760 acgcatggaa ttacatgaca gcagggggtg taccaagtgg tatagtacac tcagggggaa 2820 tgaaaggcgc gataatggcg cccgtggcag ttaccagaca gttaaggggg agtaagccta 2880 aattctccgg aagaacatct ggttccgtga cagtaagtca tagagagcta attacgcaag 2940 tgaacaactc aacgcagttt gtggttaatg gtggtgttac tggtaacctt agacaagtta 3000 atcccttgaa tgggaccttg ttctcatggc tgcctagcat tgccgctaac tttgatcagt 3060 acacatttaa tagtgttacg ttgcattacg tacctttatg tgctactacc gagactgggc 3120 gagttgcaat gtattttgac aaagattccg aggaccttga gcccgcggac agagtagagc 3180 ttgctaatta cgctacattg aaagaaactg caccatgggc cgaggctatg ttacgtatac 3240 ctactgatcg catcaaacgg tataacgatg acagcagcgt aaatgatcgc aaattgattg 3300 acctgggaca aataggtatt gcaacatatg gtggttcggg cacaaaccct gtcggggatg 3360 tgttcatatc ttacagtgtt actctacact tcccacaacc cactgcagcc ggtgtgcaga 3420 cacagcgtct tgatctcaca agtgttttag acacaaatgt cggacctagt tacactatca 3480 catccagtac ggccacggtg tacacagtcg cttttcgcac tgtgggcact tttatgctgt 3540 ttggagctgt gaggtctact gggtcacccg ttatcggact gtccagtgca aacattgcta 3600 ttaatagcaa caccacgttg aacacagccg gtactgcttt ctcctacatg acgaacgtga 3660 cggtgtcggc tttgccagca tccatcacgt tcactgtggt tggagtgatt acttcgtcaa 3720 cttcacatgc cgtgagagca tcccgtacta ataacgcaga cctgatatag taccattgag 3780 gggcctcttg aacaagacca gttcatggat actgaatacg aacaagtcaa taaaccatgg 3840 aacgagctat acaaggaaac gacgctaggg aacaagctaa tggtgaacgt tgggatggag 3900 gatcaggagg taccacttct cccttcaaac ttcctgacga aagtccgagt tggactgagt 3960 ggcggctaca taacgatgag acgaattcga atcaagataa tccccttggt ttcaaggaaa 4020 gctggggttt cgggaaagtt gtatttaaga gatatctcag atacgacagg acggaaactt 4080 cattgcacag agtccttgga tcttggacgg gaaattcggt taactatgca gcatctcgat 4140 ttttcggtgt caaccagatc ggatgtacct atagtattcg gtttcgagga gttagtgtca 4200 ccatttctgg agggtcgaga gctcttcagc atctctgtga gatggcaatt cggtctaagc 4260 aagaactgtt acagcttacc ccagtcgaag tggaaagtaa tgtatcaaga ggatgccctg 4320 aaggcgctga agccttcgaa gaagaaagcg agtaagacag actcttcagt ctgagtttgc 4380 ggaaatgagt gtaaatctgg catagcatac aggttactct tgttgggttc tagatgttat 4440 gatgacgagt cggacggact ccgcactagg tttggtcgcc taggggatgg aggtatggaa 4500 agggtctcgt gtgctgttag tcggtcgaaa gacgcgcttg caacatgggc ctatatccgg 4560 ataagtcata gcaatactag ccaacatgaa ttggttagat tcaagaagcc ca 4612 //