ID GQ259477; SV 1; linear; genomic RNA; STD; VRL; 4612 BP. XX AC GQ259477; XX DT 14-OCT-2009 (Rel. 102, Created) DT 14-OCT-2009 (Rel. 102, Last updated, Version 1) XX DE Carnation Italian ringspot virus isolate K483 replication-associated DE protein 2, replication-associated protein 1, coat protein, movement DE protein, and silencing suppressor genes, complete cds. XX KW . XX OS Carnation Italian ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4612 RX DOI; 10.1007/s00705-009-0491-9. RX PUBMED; 19768632. RA Koenig R., Lesemann D.E., Pfeilstetter E.; RT "New isolates of carnation Italian ringspot virus differ from the original RT one by having replication-associated proteins with a typical RT tombusvirus-like N-terminus and by inducing peroxisome- rather than RT mitochondrion-derived multivesicular bodies"; RL Arch. Virol. 154(10):1695-1698(2009). XX RN [2] RP 1-4612 RA Koenig R.; RT ; RL Submitted (11-JUN-2009) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX DR MD5; a36cf191df344a6144a1eaa1e1525305. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4612 FT /organism="Carnation Italian ringspot virus" FT /isolate="K483" FT /mol_type="genomic RNA" FT /isolation_source="surface water sample" FT /db_xref="taxon:39443" FT CDS 142..2598 FT /codon_start=1 FT /transl_except=(pos:1030..1032,aa:OTHER) FT /product="replication-associated protein 2" FT /note="P1-RT; readthrough of stop codon" FT /db_xref="GOA:D0E2T4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D0E2T4" FT /protein_id="ACX53276.1" FT /translation="METIRRMIWPKKEIFVGEFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATKV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRAGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYNGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK FT WDRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLGKLLDWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER FT RNLKQVQKTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVEKFYSRFTLYDVPRKHQRIDTVTN FT VHKWRGSGGSYVVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 142..1032 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="P1" FT /db_xref="GOA:D0E2T5" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D0E2T5" FT /protein_id="ACX53275.1" FT /translation="METIRRMIWPKKEIFVGEFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATKV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 2610..3770 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D0E2T6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D0E2T6" FT /protein_id="ACX53277.1" FT /translation="MTMVLRNPGTMVPQGGNKMSKMAKNAFQQGLQAGAAYLMSNPKGA FT LKKGKDAWNYMTAGGVPSGIVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSH FT RELITQVNNSTQFVVNGGVTGNLRQVNPLNGTLFSWLPSIAANFDQYTFNSVTLHYVPL FT CATTETGRVAMYFDKDSEDLEPADRVELANYATLKETAPWAEAMLRIPTDRIKRYNDDS FT SVNDRKLIDLGQIGIATYGGSGTNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLD FT TNVGPSYTITSSTATVYTVAFRTVGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTA FT GTAFSYMTNVTVSALPASITFTVVGVITSSTSHAVRASRTDNADLI" FT CDS 3805..4374 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D0E2T2" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:D0E2T2" FT /protein_id="ACX53278.1" FT /translation="MDTEYEQVNKPWNELYKETKLGNKLMVNVGMEDQEVPLLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKALKPSKKKASKTDSSV" FT CDS 3837..4355 FT /codon_start=1 FT /product="silencing suppressor" FT /db_xref="GOA:D0E2T8" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:D0E2T8" FT /protein_id="ACX53279.1" FT /translation="MERAIQGNEAREQANGERWDGGSGSTTSPFKLPDESPSWTEWRLY FT NDETNSNQDYPLGFKESWGFGKVVFKRYLRYDRTETSLHRVLGSWTGDSVNYAASRFFG FT VNQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG FT TEAFKEESE" XX SQ Sequence 4612 BP; 1236 A; 942 C; 1253 G; 1181 T; 0 other; agttcgttta tctggtgact tgcgctaact gttgctttgc gtagggaatt tctctccacg 60 actactatct ttagttttgg ggtttgaagg ttgggtctac ctttcggggg gataaattgt 120 aacttccaac aaacaagcga catggagacc atcaggagaa tgatctggcc taagaaggag 180 attttcgtag gagaattcgc gatcggagtt aataggacgg caccggtgga catcttccag 240 ttggtgtgtc gtgtggttct aagatacatg aggacaggga aaatagagtg tgattccgac 300 agtatgacta agtttgtagt tgaattacta aaaactgatt gtgctgccaa atgggagtgg 360 tttatgaaga gacggcagag gggtgactat gttgtccctc tatctatagc cgccatccca 420 atcataccgc tattgagtta tgccactaag gtacgcgcag tctcagtcaa ggcttttggc 480 aatgaactct cgttcaatgt tagggtgcct agaccatctg taccaaagaa gggcttactc 540 cttagactgg cggcaggcct agcgttagca cctatatgcg cgctggcagt gtacgctacc 600 ctccctaggg aaaaactgtc tgtatttaag ctaagaaccg aggcacgcgc acacatggaa 660 gatgagaggg aagcgactga ttgtttggtg gttgagccgg cacgggaact taagggtaag 720 gatggtgagg atctcctcac tggtagtaga ttgactaagg tgattgcgtc cacggggcgc 780 cctcgcagac ggccttatgc agctaaaatt gcacaggtcg cgagagctaa ggtgggttac 840 cttaagaata gtcctgaaaa cagacttatc taccagcgag tgatgattga gatcatggac 900 aaggactgcg tcaggtatgt tgacagggat gtcatattgc ctttggctat tggatgctgt 960 tttgtctatc cggacggagt ggaggagtcg gcggcactat ggggttctca ggaatccctt 1020 ggtgtcaaat agggaggcct agtacgtcta cctggggttg taacacagat caatcgagat 1080 atcccatctg atgtgttact tcctcaggag gtgctagagg ttcgtgcagg acctcccaat 1140 gctaaggacc gtaatatatt tatggttgca ggttgcccat cacaggcacg gttcttagta 1200 cataatcact gcctgaaaaa ccttaaaagg ggtcttgtgg agagagtctt ctgcgtagag 1260 agaaacggaa agctcgctcg cactccacaa cctaccaaag gagcctttgg acgtctttcc 1320 ccgttcagga aagcagtttg tgagaaggtt ggagttgccc accgacttgg gtatgatggg 1380 ttcctatcat actacaacgg tgcgaagctc cgtacttaca cacgagctgt ggagagtctg 1440 catatcactc ctgtctcgga gagggatagt catctgacta ccttcgtcaa ggcggagaag 1500 atatcgacgt caaagggtga cccagcacct agggtgattc agcctcgaaa ccctaggtac 1560 aatgtcgaac ttggaagata tctacggcat atggaatcca agctgatgaa agctgttgat 1620 ggcgtgttcg gagaaacgac gtgcatcaag ggatatacag ccgacgaggt gggtgcaatt 1680 tttcgagaga agtgggatag gtttgataaa cccgtcgcca ttggcctcga tgcatccagg 1740 tttgatcaac actgttccgt tgaagcattg cagtttgagc atagtttcta cagggccatg 1800 taccctggca acaagctttt gggcaagttg ttggactggc aactccataa caaagggaaa 1860 ggttatgttc ctgatggaac cataacatac cgcaaggagg ggtgccgcat gagtggggat 1920 ataaacactt cgttgggaaa ctatctattg atgtgcgcta tggtacacgg gtacatgcgc 1980 catttgggga ttaatgagtt tagtctggca aactgtgggg acgactgtgt tcttatacta 2040 gaacgtagga atcttaagca ggtgcagaaa actctaccag agtatttcct taatctagga 2100 tataccatga aggtggagcc gcctgtattt caattggaag aggttgaatt ttgccaggca 2160 caccccgtac agtttcaagg tggttggaag atggtccgca atgtccgcac cgcaatgagc 2220 aaagatgtgc attgtgtcaa taatatacgc gatctggcaa cgaggagagc atggagcaac 2280 gcccaacacc atggtggatt ggcacttagt gctggtatac ctgtggttga gaagttttac 2340 tccagattta cattgtatga tgtacctcgg aaacaccaac gtattgacac tgtcactaat 2400 gttcataagt ggcgtggatc tggtggaagt tatgttgtga ctcctgaatc cagggctagc 2460 ttttgggctg cctttggttt gacgggggat gagcaactgg ctttggagga tcgtctggat 2520 agatgggaga tggatctatt tggagaggag ggtgttgacg ctcacgagcc cagcatcctt 2580 gactccgccg tagcttgacc aagcaagaca tgacaatggt actgagaaat ccaggcacaa 2640 tggtgcctca aggcggcaat aagatgagta agatggcgaa gaatgcattt caacaaggat 2700 tacaagcagg ggctgcttat ctgatgagca accccaaggg ggcattaaag aaagggaaag 2760 acgcatggaa ttacatgaca gcagggggtg tgccaagtgg tatagtgcac tcagggggaa 2820 tgaaaggcgc gataatggcg cccgtggcag ttaccagaca gttaaggggg agtaaaccta 2880 aattctccgg aagaacatct ggttccgtga cagtaagtca tagagagcta attacgcaag 2940 tgaacaactc aacgcagttt gtggttaatg gtggtgttac aggcaatctt aggcaagtta 3000 atcccttgaa tgggaccttg ttttcatggt tacctagcat tgccgctaac tttgatcagt 3060 acacatttaa tagtgttacg ttacattacg tacctttatg tgctacgacc gaaactgggc 3120 gagttgcaat gtattttgac aaagattcgg aggaccttga gcctgcggac agagtagagc 3180 ttgctaacta tgctacattg aaggaaactg caccatgggc cgaggctatg ttacgtatac 3240 ctactgatcg tatcaaacgg tataatgatg acagcagcgt aaatgatcgc aaattgattg 3300 acctgggaca aataggtata gcaacatatg gtggttcggg cacaaaccct gttggggatg 3360 tgttcatatc ttacagtgtt actttacact tcccacaacc tactgcagcc ggtgtgcaga 3420 cacggcgtct tgatctcaca agtgttttag acacaaatgt cggacctagt tacaccataa 3480 cgtccagtac agctacggta tacacagttg cttttcgcac tgttggcacc ttcatgctgt 3540 ttggtgccgt gaggtcaact gggtcacccg ttatcggact gtctagtgca aatattgcta 3600 ttaatagcaa caccacattg aacacagccg gtactgcttt ctcctacatg acgaatgtca 3660 cggtgtcggc tctgccggca tccattacat tcactgtagt tggagtgatt acttcgtcaa 3720 cttcgcatgc cgtgagagca tcccgtactg ataacgcaga cctgatctag taccattgag 3780 gggcctcttg aacaagacca gttcatggat actgaatacg aacaagtcaa taaaccatgg 3840 aacgagctat acaaggaaac gaagctaggg aacaagctaa tggtgaacgt tgggatggag 3900 gatcaggaag taccacttct cccttcaaac ttcctgacga aagtccgagt tggactgagt 3960 ggcggctata taacgatgag acgaattcga atcaagatta tccccttggt ttcaaggaaa 4020 gctggggttt cgggaaagtt gtatttaaga gatatctcag atacgacagg acggaaactt 4080 cattgcacag agtccttgga tcttggacgg gagattcggt taactatgca gcatctcgat 4140 ttttcggtgt caaccagatc ggatgtacct atagtattcg gtttcgagga gttagtgtca 4200 ccatttctgg agggtcgaga actcttcagc atctctgtga gatggcaatt cggtctaagc 4260 aagaattgtt acagcttacc ccagtcgaag tggaaagtaa tgtatcaaga ggatgccctg 4320 aaggcactga agccttcaaa gaagaaagcg agtaagacag actcttcagt ctgagtttgc 4380 ggaaatgagt gtaaatctgg catagcatac aggttactct tgttgggttc tagatgttat 4440 gatgacgagc tggtcgggct ccgcactagg tttggtcgcc taggggatgg agatatggaa 4500 agggtctcgt gtgctgttag tcggtcggaa gacgcgcttg caacatgggc ctataaccgg 4560 ataagtcata gcaatactag ccaacatgaa ttggttagat tcaagaagcc ca 4612 //