ID GQ258979; SV 1; linear; genomic RNA; STD; VRL; 3848 BP. XX AC GQ258979; XX DT 19-MAY-2010 (Rel. 104, Created) DT 20-MAY-2010 (Rel. 104, Last updated, Version 2) XX DE Broome virus segment L3, complete sequence. XX KW . XX OS Broome virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus; OC unclassified Orthoreovirus. XX RN [1] RP 1-3848 RX DOI; 10.1016/j.virol.2009.11.048. RX PUBMED; 20350736. RA Thalmann C.M., Cummins D.M., Yu M., Lunt R., Pritchard L.I., Hansson E., RA Crameri S., Hyatt A., Wang L.F.; RT "Broome virus, a new fusogenic Orthoreovirus species isolated from an RT Australian fruit bat"; RL Virology 402(1):26-40(2010). XX RN [2] RP 1-3848 RA Thalmann C.M., Wang L.-F.; RT ; RL Submitted (10-JUN-2009) to the INSDC. RL Commonwealth Scientific and Industrial Research Organisation (CSIRO), RL Livestock Industries Australian Animal Health Laboratory, Private Bag 24, RL Geelong, Victoria 3220, Australia XX DR MD5; c07fd3f8fffc34d23b718fe48484904e. XX CC GenBank Accession Numbers GQ258977-GQ258986 represent the complete CC genome of Broome virus from Pteropus scapulatus. XX FH Key Location/Qualifiers FH FT source 1..3848 FT /organism="Broome virus" FT /segment="L3" FT /host="Pteropus scapulatus (little red flying fox)" FT /mol_type="genomic RNA" FT /country="Australia" FT /db_xref="taxon:667093" FT CDS 22..3813 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="lambda 3" FT /db_xref="GOA:D6MM22" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR012915" FT /db_xref="UniProtKB/TrEMBL:D6MM22" FT /protein_id="ACU68602.1" FT /translation="MGDYVPPVFAAFQRYLSGLEDLDYGVFSNTAMNLQLSDRSELYRW FT LDKVQFRVNFSIPVTLFNKPSHAMFYYIDGANLVRRRQLNGELDLYVPNCKLFELLEPT FT ERLPNYGRLRKVLNTAAADGHVESRIAVSYYNTVNSQARQIKGPLERFLQCLLIAESCP FT LGNDPTHVEDNDGVLPIETNLPLYVLREVARRITGNSGDRAPWLFTATEILWFMSPLMT FT SAIAPLMIDLANLAIMRQICRLPDVVTRAAVTMYLNAADSHSYSQYVLETKGLLMGASL FT HSMYRTAVSGIVPVVEWSEPRSKYKFSYQGVRNLTSRDYNHSWLCDDDLLQRAAKFGLR FT DVINDILTCSKKVDKHDFESVKWIRNVMAGTSSIFIVRAPTETVIAEYSQTPVILEPIP FT EEALTMPIGEVRCLRNVAPSTPKFLYDVWRDAARDVCNRSQTWDALEQVIMRSQYVTAR FT GGSGAALRDVLKNANIELPSFNGVKVKSSTKIVQAAQVAGLSFMQLKDAILAPLSMGLR FT NQIQRRQRSIMPLNVVQQQVSAIHTLVADHINKHVNLSTTSGSAVIEKVLPMGMYASSP FT PNQTINIDIKACDASITCQYFLSIICGAIFDGCHNVRVTSPYMGVPPTRLRVIGDDGIA FT STMPISGMQHMVQSLATLYNRGFAYKVNDPFCPGNTFTHHTLTFPSGSTATSTEHTANN FT STMMDGFLRIWLPDHCKEKDVLALAERMSIQRNYVCQGDDGIMIIDSNNIDMIDGDLIK FT RFCQYLKQYGETFGWNYDIDFNGTTEYLKLYFIYGCRIPNISRHPVINKERATQERSEL FT WPATIDIMMGVFWNGVHDGLHWRQWIRFCWCLAALYSRKINRDALTPRVIQYSPWAFVY FT LGLPPIRAFGSHPYPISVYLPTGDMGFYALLTVLKPFILAYADARGYNADSEGLFGPID FT HVRLFNDLKLYQGYYMAQLPRRPVKTSRTISSNDRARFLTALHGYVFEDPVLRMRVARG FT RHMWHMSGFEKVKHPPSLEDVPRKWLEGAQEADVATLEEINAMDDVLMNAMRHTYSSFS FT KLLECYLSVEWDYEYGSEPAIDLRVPICAGYDPENADMYFKMTSLGPMMSSTKKYFSDK FT LFIGKTVSGLDVEAVDKSLLRLRALGAPRDAIIGQLMMLGYDFGAASTLAGRILLQNVH FT AVQLAKVVNLAVPDSWMIFDFDRMLHERICVFPKVSRKAFTDIAPHHAWIKGVLRLLGG FT AVAMSIPGVVPKLYLSEIRGGSRSMSLKLRHWMAKEVL" XX SQ Sequence 3848 BP; 984 A; 654 C; 945 G; 1265 T; 0 other; gtcaattcta agtcgggtac tatgggcgat tatgtgcctc cagtgttcgc ggcatttcag 60 cgctatttgt ctggtcttga agatcttgat tatggtgttt tttctaatac ggcaatgaat 120 ttacagctga gtgatagatc cgaattgtat cggtggttag ataaggttca gtttcgtgtc 180 aacttttcta ttcctgtgac tttatttaat aaaccgtctc atgcaatgtt ctattacatt 240 gatggtgcta atctggtacg tcggaggcag ttgaatggtg aattggactt atatgttcct 300 aattgcaaat tgttcgaact tttggagcct actgaacgat tacctaatta tggaagatta 360 cgtaaggtct tgaatacagc agcagctgac ggtcatgttg aatcgcgtat tgcggtatct 420 tattataaca cagttaatag ccaggcacga caaataaaag gtccattaga acgttttctg 480 cagtgtttac tgatagcgga gagctgtcca ttggggaatg accccacgca cgttgaggat 540 aatgatggag tcctgccaat agaaactaat ttaccattat acgtgttgag agaagtggct 600 agaaggatta caggcaatag cggtgatcgt gcaccttggt tattcacagc gactgagata 660 ctgtggttca tgagtcctct tatgacatca gccattgctc cgttgatgat tgacctagct 720 aatttggcaa taatgaggca aatttgtcgt ctacctgacg tagttactag ggcggctgtt 780 acgatgtatc ttaatgcagc ggatagccat tcttatagtc aatatgtgct tgaaactaag 840 ggtttgttga tgggagcgag tttacactct atgtatcgta cggctgttag tggtattgtt 900 ccggtcgttg agtggtcaga gcctcgttca aaatataaat tttcgtatca aggtgtgcgt 960 aacttgacga gccgtgatta taatcattca tggctgtgtg atgatgactt gttacaacga 1020 gctgcgaaat ttggactgcg tgatgtaatt aatgatattc ttacatgcag taaaaaggtt 1080 gacaaacacg attttgagtc ggtaaagtgg atacgtaacg tcatggctgg aacgagttca 1140 atatttattg tgagagcacc cacagagact gttatcgctg agtattcgca gactcctgtc 1200 attttagagc ctatacctga agaagctttg actatgccca ttggtgaagt gagatgttta 1260 cgaaatgtcg ctccatccac tccaaagttc ttgtacgatg tatggcgtga tgcggcgaga 1320 gatgtatgta atcgtagtca gacttgggat gctctagagc aggtaattat gcgtagtcag 1380 tatgttactg ctcgtggagg ctctggtgct gctttacggg atgtacttaa gaatgctaat 1440 attgaattac cttctttcaa tggggttaag gttaagtcat cgactaaaat agtacaagct 1500 gctcaagttg ctggtttatc ttttatgcag ctaaaggatg ctattttggc accattatct 1560 atggggttaa gaaatcagat tcagcgtaga cagcgctcga ttatgccact taatgttgtt 1620 cagcagcaag tgtcagctat acatactctg gtggccgatc atataaataa gcatgtgaat 1680 ttgtctacta cttcaggtag cgctgtaatt gaaaaagttt taccaatggg catgtatgcg 1740 tcatctcctc ctaatcaaac tattaatatt gatattaagg cctgtgatgc tagtattacc 1800 tgtcagtatt ttcttagcat tatttgtgga gctatttttg atggttgtca taatgtgcgc 1860 gtaacttctc catatatggg tgtacctcct acacgattgc gtgttattgg tgatgatggt 1920 attgcatcta ctatgccaat ctcgggtatg caacatatgg ttcaatcctt agctacgtta 1980 tataatcgtg gatttgcata taaggtcaat gatccttttt gtccagggaa tacttttaca 2040 catcatacct taacctttcc ttctggttcg acggctacgt ctacagagca tactgcaaat 2100 aatagtacca tgatggacgg ttttttacgt atatggttgc ctgatcattg taaggaaaag 2160 gatgtactcg ctttggcgga gcgcatgtct atacagcgga attacgtatg tcaaggtgat 2220 gatggtataa tgattattga ttcgaacaat attgatatga tagatggtga tttaattaag 2280 cgattttgtc aatacttgaa acagtatggt gagacctttg gatggaatta tgatattgat 2340 ttcaatggga caactgaata cttaaaattg tattttattt atggttgtcg tatacctaat 2400 attagtaggc atcccgtaat taacaaagag cgtgctactc aggagcgctc ggaattatgg 2460 cccgctacta tcgacattat gatgggtgtg ttttggaatg gcgtgcatga tggtttacac 2520 tggcgacagt ggattagatt ttgttggtgt ttggcggctt tatattcacg taagattaat 2580 cgtgatgctt taactccacg agttatacaa tattcgccgt gggcatttgt gtatttaggg 2640 ttaccgccta ttcgagcatt tggttctcat ccttatccaa tttcggtgta tctgccaacg 2700 ggtgatatgg gtttctatgc attgctgaca gttttgaaac cttttatttt agcttatgct 2760 gatgctcgtg gttataatgc tgatagtgag ggattgtttg gacctattga tcacgtacga 2820 ttgtttaatg atctgaagct atatcaaggt tattatatgg ctcaattacc tcgtcgtcct 2880 gtgaagacga gtcggaccat ctcgtcaaac gaccgtgctc ggttcctaac tgctttacat 2940 ggttatgttt ttgaagatcc tgtgttgcgt atgcgtgttg cacgtggacg tcatatgtgg 3000 catatgtctg ggtttgaaaa ggtgaaacac ccgccgagtt tagaggacgt accgaggaaa 3060 tggttggaag gggctcaaga ggctgatgtt gctactttgg aggagattaa tgctatggat 3120 gatgtgttaa tgaatgccat gcgacataca tattcgagtt tctcaaaatt actggaatgt 3180 tatttgtccg ttgaatggga ttatgagtat ggaagtgagc cagcgattga tcttcgggtt 3240 cctatatgtg ccgggtatga tccagagaat gcggatatgt attttaagat gacgtctctt 3300 gggcccatga tgagtagtac aaagaaatat ttttcagata aattattcat tggcaaaact 3360 gtgtcagggt tggacgttga ggctgttgat aaaagtttac ttcggctgcg tgcacttgga 3420 gctccccgtg atgcgataat aggtcagctt atgatgttgg gatatgattt cggtgctgca 3480 tccacgctag ctgggcgtat attacttcag aatgtgcacg ctgttcaact ggcgaaagta 3540 gttaacttag ctgtgccaga ctcgtggatg atattcgatt ttgatcgtat gttgcatgaa 3600 cgtatttgtg tttttccaaa agtctcacga aaggcgttta cggatatagc gcctcaccac 3660 gcatggatta aaggtgtttt gcgcttatta ggaggggctg ttgcaatgtc gatacctgga 3720 gttgtgccta aattatatct aagtgagatt agaggtggga gtcgtagtat gtctctaaaa 3780 ctcaggcatt ggatggcgaa ggaagtgctg tgatcggggg cgcatgtgct ccgtcttagc 3840 tattcatc 3848 //