ID GQ258977; SV 1; linear; genomic RNA; STD; VRL; 3947 BP. XX AC GQ258977; XX DT 19-MAY-2010 (Rel. 104, Created) DT 20-MAY-2010 (Rel. 104, Last updated, Version 2) XX DE Broome virus segment L1, complete sequence. XX KW . XX OS Broome virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus; OC unclassified Orthoreovirus. XX RN [1] RP 1-3947 RX DOI; 10.1016/j.virol.2009.11.048. RX PUBMED; 20350736. RA Thalmann C.M., Cummins D.M., Yu M., Lunt R., Pritchard L.I., Hansson E., RA Crameri S., Hyatt A., Wang L.F.; RT "Broome virus, a new fusogenic Orthoreovirus species isolated from an RT Australian fruit bat"; RL Virology 402(1):26-40(2010). XX RN [2] RP 1-3947 RA Thalmann C.M., Wang L.-F.; RT ; RL Submitted (10-JUN-2009) to the INSDC. RL Commonwealth Scientific and Industrial Research Organisation (CSIRO), RL Livestock Industries Australian Animal Health Laboratory, Private Bag 24, RL Geelong, Victoria 3220, Australia XX DR MD5; 654b962a810c3ca954e21d08c0a22a23. XX CC GenBank Accession Numbers GQ258977-GQ258986 represent the complete CC genome of Broome virus from Pteropus scapulatus. XX FH Key Location/Qualifiers FH FT source 1..3947 FT /organism="Broome virus" FT /segment="L1" FT /host="Pteropus scapulatus (little red flying fox)" FT /mol_type="genomic RNA" FT /country="Australia" FT /db_xref="taxon:667093" FT CDS 14..3907 FT /codon_start=1 FT /product="major core protein" FT /note="lambda A; ATPase; NTPase; RNA helicase; ssRNA and FT dsRNA binding" FT /db_xref="GOA:D6MM20" FT /db_xref="InterPro:IPR013087" FT /db_xref="UniProtKB/TrEMBL:D6MM20" FT /protein_id="ACU68600.1" FT /translation="MDAFRTRVKRRRSRAPEGKNTDSGVNSESLNEVKPIHERTDLNVA FT HNEGSTTNQKSYISDVGHREQRLVVDAPGKVDGYDASDMTLLKKEKEEVIHPVHQKLGG FT DAANDPNARYNQNSDPARKNSSFSYTPEGNVGLNELERSKRIDHDGGVKTQPVREEVQA FT MAQSVLSTRPLYGGLPSYNHELNSHVCMVCMRAFMSPEQLAVHQTTHSLGAVSGLMSYE FT VSQAVIDFVASWSRATATANVKSGISVDEIDDLLLNSAPLLVTWDAGLCTSFTLVPIIP FT ARTVQDVIAYQWFSSSYNIETPFPQGSVVRIVLQTNWAGQLDHDRGRRVKQLPPTSSNV FT PLFRQAFNHGLTPSNAFNPRLMRSNVILMCLDVVLDNLHLNRNTAYALDLTAALTANLG FT AKQLRAIGGDNPGKWYPIMYPSRVRLPNASKTAEFVNHCLEDRVGRFDRSQTFSGAMSD FT WADTYETLDSLTHLIRTRWYNRLQRMNMTPNEIADALSRCAKHLLTISASQAPSMTRLM FT PFRVTTPERQLLQIMYFLNVGTNAGLVEPIISNAARMLAKMSPLMINPQLVADAIASVV FT EQTTNSISPAAALLMRLRPNMADFSDFRRSCICFLYNGMVTTYLDEQSFPVHRGNVLSV FT DTLIDMFICLMALPMTTDPNGPVKAFMVLANAMYGFENITMDDPNWNQQRAAASFNNPR FT LWPRCFVQRTIDRARCPVLARWADMIYQYWPRPGATTFGAPDILGSANLFTGPDELLLP FT FQVTAPNTVSPTLSLVNELCNWRNAVIDMLVGIVNDGRFMINWNPAMRASMTNALTKFK FT IIRSYTPGYMCELLPIELAALAPILPLQPLQVPYAGLDRNAIPVHMNVSRQAPHEIAQP FT ALHMSMTQQFVGVPIAVNARPITVALLSGTYPENPPLITNVWYAAALAPLYSHDGLFSH FT LQHAVVVSEAYQTVIACLSQCTNMRFPVDRVFEWIPQIELGANESANLARHINEAFRMA FT FGLTDESILLQPFLEGDPRATQLTIAYTNYVGDVRSLTPVIPDSMIAETIVDVGRVLRH FT EYNCFGICKGDIIIGQLLTESGFNPLAPPSSVVFDETMDDVHVFNHRTIATFGMNGGEM FT TVEDAAGNHVPLRGRWVMPLDLWQINNAFFKTILPTRLRSGQLMIRLRLGAFPYVLQYF FT NARDPMDGFDMLQQWFDSISPTGIAPVPFLMPESQDHNVSSGLAIHYIWATEYNDGSLF FT CTNSSSPATVFGPDKSIPLERYSVLTDEDFPPRGSQLPAVIDFYGLIRRYNLETPPLTA FT AVTTYGSGLPMSV" XX SQ Sequence 3947 BP; 991 A; 789 C; 936 G; 1231 T; 0 other; gtcaaatttc gggatggatg cgtttcgcac tcgtgtaaag cgccgtagat cacgtgctcc 60 ggaagggaaa aatacagaca gtggtgttaa tagtgaaagt ttaaatgaag tcaaaccaat 120 tcacgaacgg acggacttaa acgtagctca taatgaaggt tctaccacca atcaaaagtc 180 atatataagt gatgttggtc accgagaaca gcgtttggtg gttgatgcgc cgggtaaagt 240 tgatggttat gacgccagtg acatgacatt gttgaagaag gaaaaagagg aggtgattca 300 tcctgtacat cagaaattag gtggagatgc tgccaatgat cccaatgcgc gctataacca 360 aaattcagat ccggctagga aaaattcatc tttttcatat acacctgagg gtaatgtggg 420 gttaaatgag ttggagcgca gtaagcgtat cgatcatgat ggaggtgtca aaacacaacc 480 agtgcgagag gaagtgcagg cgatggcaca gagtgttctt agtactcgac cattatatgg 540 agggttgcct agttataatc atgaattgaa cagtcacgtt tgcatggtgt gtatgcgcgc 600 ctttatgtcg cctgaacaat tggctgttca tcaaaccact cactctcttg gtgcagttag 660 tggattaatg agttatgaag taagtcaagc tgttatagat ttcgtagcct catggagtcg 720 tgctactgcg acggcaaatg ttaagtctgg aatttctgtg gatgaaattg atgatttatt 780 gttgaatagt gcaccattgc tggtcacgtg ggatgctggt ctgtgtactt cgttcacttt 840 ggttcctata attccagcta gaacggtgca agatgtgatc gcatatcagt ggttttcatc 900 atcatataac attgagacac cttttcctca aggtagcgtt gttaggatcg tgttacagac 960 taattgggcg ggtcagttgg atcatgatag gggtcgtcgt gtgaaacaat taccaccaac 1020 atcatctaat gtacctttgt ttaggcaggc ttttaatcat ggcttgaccc cgagtaatgc 1080 tttcaatcca cggctgatgc gcagtaacgt cattttgatg tgcttagacg tagtcttaga 1140 caatttgcat ttgaatagga atacagctta tgctctcgat ttgactgctg cccttactgc 1200 taatttaggt gctaagcaat tgcgtgctat tggtggtgat aatcctggta aatggtatcc 1260 aattatgtac ccttcacgtg tgaggttgcc taatgcatcg aaaacagcag agtttgtcaa 1320 tcattgcttg gaagatcgtg ttggtagatt tgaccgtagt caaacatttt cgggcgcgat 1380 gtctgactgg gctgatacct atgaaacttt ggattcgttg actcatttga tacgtactcg 1440 ctggtacaat cgtcttcagc gaatgaatat gactcctaat gagattgctg atgcgttgtc 1500 acggtgcgca aaacatttgt taaccatttc tgctagtcag gctccatcta tgaccagatt 1560 aatgcctttt cgagttacca cgcctgagcg tcaactgtta cagattatgt attttctcaa 1620 tgttggcaca aatgctgggc ttgttgagcc gataatttcc aatgctgctc gtatgcttgc 1680 gaaaatgtca cctttaatga tcaatcccca actggtagcg gatgctattg cctccgttgt 1740 tgagcaaaca accaattcaa ttagtccagc ggcagcattg ttgatgcgtt tgcgtcctaa 1800 catggctgat ttttctgatt tcagacgatc gtgtatatgt ttcttgtata atgggatggt 1860 gacgacatac ttagacgagc agtcttttcc ggtacatcgt ggaaatgttc ttagtgttga 1920 taccctaatt gatatgttca tttgcttaat ggctttaccc atgactactg atcctaatgg 1980 acccgttaaa gcattcatgg tgttggctaa cgccatgtat ggatttgaaa atattaccat 2040 ggatgacccc aactggaatc agcaacgtgc tgctgcttcg tttaacaacc cacggttatg 2100 gccccgatgt tttgttcagc gcactattga ccgcgctcgt tgtccagtac tcgcgagatg 2160 ggctgatatg atttaccaat actggccgcg tcccggtgct acaacattcg gagctcctga 2220 cattttgggt agcgctaatt tatttactgg tcctgatgag ttgttgttac cttttcaggt 2280 gactgcacct aataccgtgt cacctacgtt gagtttagtg aatgaattat gtaattggcg 2340 aaatgcagtc attgacatgc tagtgggtat agttaacgat ggacgtttta tgataaattg 2400 gaatcctgct atgcgtgctt caatgactaa cgcattgaca aaatttaaga tcattcgttc 2460 atacactcct ggttatatgt gtgagttgct gcctattgag ttagctgctt tggcgcctat 2520 actgcctctt cagcctttac aagtacctta tgctggttta gacagaaacg ccatacccgt 2580 gcatatgaat gtgtctcgtc aagcgcctca tgagattgcg caacccgctt tgcacatgtc 2640 aatgacccaa caatttgtgg gtgtccctat tgctgttaac gctcgtccaa ttactgtggc 2700 tttattgtct ggtacatatc cggagaatcc accattgata actaatgtgt ggtatgccgc 2760 cgcgctggca cctttgtatt cgcacgatgg tcttttctca catttgcagc atgctgtggt 2820 agtttctgaa gcgtatcaga cggtgatagc gtgcttatcg caatgcacca atatgagatt 2880 tcctgtggat cgagtgtttg aatggatccc tcaaatcgaa ttgggagcta acgaaagcgc 2940 caatttagcg cgtcacatta atgaggcgtt tagaatggca ttcggcctaa ctgatgagag 3000 catcttgtta caacccttcc ttgaaggaga tcctcgagca actcagctga ctattgccta 3060 tacgaattat gtgggtgatg tgcgaagtct gactccagtt ataccggatt caatgatagc 3120 tgaaacaatt gttgatgttg ggcgtgtgtt acgtcacgaa tataattgtt tcggtatttg 3180 caaaggggac atcatcatcg ggcagttatt aactgaatct ggtttcaacc ctctagctcc 3240 gccatcaagt gttgtgtttg atgagactat ggatgatgtc catgtgttta atcatcggac 3300 tattgcaact tttggcatga atggaggtga gatgactgtg gaggatgctg cgggtaatca 3360 cgtgccttta cggggtcgtt gggtgatgcc actcgatttg tggcaaataa ataatgcatt 3420 ctttaaaact attttgccaa cccgtttgcg atctggtcaa ttgatgatac gtttacgatt 3480 gggtgctttt ccatatgtgt tacaatattt taatgctagg gatcctatgg acggttttga 3540 tatgttacag cagtggtttg attctatttc gccaactggt atagctccag taccattttt 3600 gatgccggaa tcacaggatc acaatgtttc atctgggctg gccattcatt atatttgggc 3660 tacggagtac aacgatgggt ctctgttctg cacaaattcg tcatctccag ctactgtgtt 3720 tggacctgat aaaagcatac ccttagaacg ttactcagtg ttgacagatg aagattttcc 3780 acctcgtggg agtcaattac ctgctgttat tgatttttat ggactaattc ggcgatataa 3840 cctagagaca ccgccattaa ctgctgctgt gacaacatat ggatctggtc taccgatgag 3900 tgtgtaatga acctcccgcc gctattcgat agcggtttgt attcatc 3947 //