ID GQ247893; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC GQ247893; XX DT 20-JUL-2009 (Rel. 101, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 3) XX DE Cotton leaf curl Burewala virus segment DNA-A, complete sequence. XX KW . XX OS Cotton leaf curl Burewala virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2760 RX DOI; 10.1007/s11262-009-0439-x. RX PUBMED; 20043195. RA Kumar A., Kumar J., Khan J.A.; RT "Sequence characterization of cotton leaf curl virus from Rajasthan: RT phylogenetic relationship with other members of geminiviruses and detection RT of recombination"; RL Virus Genes 40(2):282-289(2010). XX RN [2] RP 1-2760 RA Kumar J., Kumar A., Khan J.A.; RT "Cotton leaf curl virus infecting Bt cotton"; RL Unpublished. XX RN [3] RP 1-2760 RA Kumar J., Kumar A., Khan J.A.; RT ; RL Submitted (05-JUN-2009) to the INSDC. RL Molecular Virology Lab, National Botanical Research Institute, Rana Pratap RL Marg, Lucknow, Uttar Pradesh 226 001, India XX DR MD5; 137ec5dcf2b780e63aee929915f3243c. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Cotton leaf curl Burewala virus" FT /segment="DNA-A" FT /host="Gossypium hirsutum" FT /isolate="sri-ganganagar" FT /mol_type="genomic DNA" FT /country="India:Rajasthan" FT /collected_by="Jitendra Kumar" FT /collection_date="Aug-2008" FT /db_xref="taxon:620894" FT gene 184..486 FT /gene="AV2" FT CDS 184..486 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:C7E440" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C7E440" FT /protein_id="ACT36282.1" FT /translation="MLAVKYLQLVEKTYSPDTLGYDLIRDLILVIRARNYVEATSRYNH FT FHARFEGTPPSQLRQPICEPCCCPHCPRHQSKIMGEQAHEQKAQDVQDVQKSRCS" FT gene 290..1063 FT /gene="AV1" FT CDS 290..1060 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:C7E441" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C7E441" FT /protein_id="ACT36283.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKSWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1057..1461) FT /gene="AC3" FT CDS complement(1057..1461) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:C7E442" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C7E442" FT /protein_id="ACT36284.1" FT /translation="MDSRTREPITSALAGNVAYIWEVPHPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT gene complement(1202..1606) FT /gene="AC2" FT CDS complement(1202..1606) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:C7E443" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C7E443" FT /protein_id="ACT36285.1" FT /translation="MQSSSLSKDHCTQLPIKVQHREAKRRNRRRRIDLECACYYNLSIN FT CHNHGFTHKGTHHFSSSRECRIYLGGSTSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQP FT EESVGDTQMFHSFPNLDDLTASDWSFLKGI" FT gene complement(1503..2597) FT /gene="AC1" FT CDS complement(1503..2597) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:C7E444" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C7E444" FT /protein_id="ACT36286.1" FT /translation="MAPPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHEDGSHHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTAHDAYAAALNAGTKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVMMTRLRAHFLKHFKEFMGAQRD FT WQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYNEFLNEEKNTALKNWALKNAIFITLEGP FT LYSASNQSTAQGSEETQQEEENRS" FT gene complement(2138..2440) FT /gene="AC4" FT CDS complement(2138..2440) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B8Q6T7" FT /protein_id="ACT36287.1" FT /translation="MGAIISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQA FT QMSRPTSTRTGTLSSGESFRSMEDQQEEDSRQPTTLTPQHLTQALSQRLLESLRN" XX SQ Sequence 2760 BP; 723 A; 541 C; 648 G; 848 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcgtattata agtacttcgt tgctaagtat 120 gcgtttgaaa aatgtgatcc actgttaaat gagttccccg acaccgttca cggttttagg 180 tgtatgttag cagttaaata tttgcagtta gtagagaaaa cttactctcc tgatacattg 240 ggttacgatt tgataaggga tttaatcctg gtaataaggg ctaggaatta tgtcgaagcg 300 accagcagat ataatcattt ccacgcccgc ttcgaaggta cgccgccgtc tcaacttcga 360 cagcccatat gtgagccgtg ctgctgcccc cattgtccgc gtcaccaaag caaaatcatg 420 ggcgaacagg cccatgaaca gaaagcccag gatgtacagg atgtacagaa gtccagatgt 480 tcctagagga tgtgaaggtc catgtaaggt tcagtcgttt gagtccagac atgatattca 540 gcatataggt aaagtaatgt gtgttagtga tgttactcgt ggtactgggc tgacccatag 600 agttggtaaa agattttgtg ttaagtctgt ttatgtgttg ggtaagatct ggatggatga 660 gaacattaag acgaagaatc acacgaatag tgtgatgttt ttcttggtta gagatcgtag 720 acctgttgat aaacctcaag attttggaga ggtatttaat atgtttgata atgagcccag 780 tacggcgact gtgaagaatg ttcatcgtga taggtatcaa gttctgcgca aatggtatgc 840 aactgtcacc ggtggacaat acgcttcaaa ggaacaagct ctcgtgaaga aatttattag 900 agttaataat tatgttgtgt ataaccagca ggaagctggc aagtatgaga atcattctga 960 gaatgcttta atgttgtata tggcgtgtac tcacgcctct aacccagtgt atgctacctt 1020 gaagatacgg atctacttct atgattccgt gacaaattaa taaatattga attttattga 1080 agatgattgg tctacaaata caacatgttg taatacattc cataatacat gatcaactgc 1140 tctaactaca ttattaatac tgacaattcc taagttattt aaatatttaa gcacttgagt 1200 cctaaatacc cttaagaaac gaccagtcgg aggctgtgag gtcatccaga ttcggaaagc 1260 tatgaaacat ttgtgtatcc ccaacgcttt cctcaggttg tgattgaact ggatcctgat 1320 cgtgagtata tccatattcg tcgtgaatgg acggttgacg tggctgatga tcttgaaata 1380 aaggggatgt ggaacctccc agatatatgc gacattccct gctagagctg aagtgatggg 1440 ttcccttgtg cgtgaatcca tggttgtggc agttgattga cagattataa taacacgcgc 1500 attcaagatc tattctcctc ctcctgttgc gtctcttcgc ttccctgtgc tgtactttga 1560 ttggaagctg agtacagtgg tccttcgaga gtgatgaaga ttgcattttt taaggcccaa 1620 ttctttaatg ctgtgttttt ttcctcgttg aggaattcat tataactgct gttcggacca 1680 ggattgcaca ggaagattgt cggtatcccg cctttaattt gaactggctt tccgtatttt 1740 gtgttggact gccagtctct ttgggccccc atgaactctt taaagtgttt gaggaaatgc 1800 gctctgagtc gagtcatcat gacgttgtac caggcgtcgt tactgtatac tttgggactc 1860 aggtccagat gtccgcacaa atagttatgt ggtcccaatg atctagccca catcgtcttc 1920 cccgttcgac tatctccctc aattactata ctccgaggtc taaggggccg cgcagcggca 1980 tcgacaacgt tatcgatggc ccaaacttca agttcttctg gaacttgatc gaaagaagaa 2040 ggagaaaaag gagaaatata gggagccggt ggctcctgaa agattctatc tagatttgca 2100 tttaaattat gaaattgtag tacaaaatct ttaggagcta gttccttaat gactctaaga 2160 gcctctgact tagtgcctgc gttaagtgct gcggcgtaag cgtcgtgggc tgtctgctgt 2220 cctcctcttg ctgatcttcc atcgatctga aactctcccc actcgagagt gtccccgtcc 2280 ttgtcgatgt aggccttgac atctgagctt gatttagctc cctgaatgtt cggatggaaa 2340 tgtgctgacc tggttgggga taccaggtcg aagaatctgt tattcgtgca gacgaatttg 2400 ccctcgaact ggatgagcac atggagatga tggctcccat cttcgtgtaa ctctctgcag 2460 agtttgatgt attttttatt cgagggtgtg ttgatggctt gaatttggga aagtgcttcc 2520 tctttagtga gtgagcactg tggataagtg atgaaataat ttttggcttg tactttaaaa 2580 cgtttggggg gagccattga ctttggtcaa ttagagacaa ctgatgggct tttactctgg 2640 gaattggaga ctggatacaa tttatagtgt ctccaaatgg catattctgt aaataactag 2700 aagttcgttt gaaattcaaa ttcccctttg gggtccaaaa gcggccatcc gtataatatt 2760 //