ID GQ245760; SV 1; circular; genomic DNA; STD; VRL; 2742 BP. XX AC GQ245760; XX DT 02-JUL-2010 (Rel. 105, Created) DT 02-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Okra leaf curl virus isolate New Delhi segment DNA-A, complete sequence. XX KW . XX OS Okra leaf curl virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2742 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Occurrence of Okra leaf curl disease in New Delhi, India"; RL Unpublished. XX RN [2] RP 1-2742 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (04-JUN-2009) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; f58045fb0ad1ef56edc95709db79904c. XX FH Key Location/Qualifiers FH FT source 1..2742 FT /organism="Okra leaf curl virus" FT /segment="DNA-A" FT /host="okra" FT /isolate="New Delhi" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="A.K. Singh" FT /collection_date="Jun-2008" FT /db_xref="taxon:163654" FT gene 121..486 FT /gene="AV2" FT CDS 121..486 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /function="may be responsible for viral pathogenesis" FT /db_xref="GOA:D8UVY0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D8UVY0" FT /protein_id="ADG29346.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL FT ICILRSRNYVEASCRYRHFYARVESTSASELRQPIQQPCCCAHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /function="responsible for encapsidation of viral DNA and FT insect transmission" FT /db_xref="GOA:D8UVY1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D8UVY1" FT /protein_id="ADG29345.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYSSRVAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFYMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVKVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(629..946) FT /gene="AC5" FT CDS complement(629..946) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D8UVY2" FT /protein_id="ADG29351.1" FT /translation="MILVFSCFLLIVNNIIVNLDKLLDQRLFLTRILTTRDGCMPFPQH FT LVTIPMTILHGRRTGFVVKHVKYLTKILGFIYRSSITNKEKHHRIRMVLGLDVLVHPYL FT T" FT gene complement(1054..1458) FT /gene="AC3" FT CDS complement(1054..1458) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /function="enhances replication of viral DNA" FT /db_xref="GOA:D8UVY3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D8UVY3" FT /protein_id="ADG29349.1" FT /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILNHDNRPFTTNMDI FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVINQTMYVDQYSDIKFKLY" FT gene complement(1151..1603) FT /gene="AC2" FT CDS complement(1151..1603) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /function="required for transactivation of virion sense ORF FT and a suppressor of gene silencing" FT /db_xref="GOA:D8UVY4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D8UVY4" FT /protein_id="ADG29348.1" FT /translation="MQHSSSSPNRCTRVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP FT SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNLN" FT gene complement(1500..2588) FT /gene="AC1" FT CDS complement(1500..2588) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /function="required for replication" FT /db_xref="GOA:D8UVY5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D8UVY5" FT /protein_id="ADG29347.1" FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQIQNLQTPTNKKFIKI FT CKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDYVLQFHN FT LNANLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLEEEKNSALKAWALKNAAFVFLTQPLY FT SGTNQSSTQGSEESAQEETSGP" FT gene complement(2144..2440) FT /gene="AC4" FT CDS complement(2144..2440) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /function="required for viral pathogenesis and a suppressor FT of gene silencing" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D8UVY6" FT /protein_id="ADG29350.1" FT /translation="MRMGNLIFTCSSNSRGNTSARISDSSTWSPQAGQHISIRTFRELN FT QAQMSSPTSTRTETPSNGESFRSMDDLQEGDSRQPTTLTPQHLTQAVSQRLLE" XX SQ Sequence 2742 BP; 724 A; 544 C; 641 G; 833 T; 0 other; accggatggc cgcgcgattt tttaaagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct tcggctataa gtacttgcgc actaagtttc aattcaaaaa 120 atgtgggatc cactattaaa cgaatttccg gatacggttc acgggtttcg ttgtatgcta 180 tctgtaaaat atttgcaact tttgtcgcag gattattctc cagatacgct tgggtacgat 240 ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgtcggcgt ctgaacttcg gcagcccata 360 cagcagccgt gttgctgcgc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaagccca gaatgtatcg gatgtacaga agtccggatg ttccaagggg 480 ttgtgagggt ccctgtaagg tacaatcctt tgagtctaga cacgatgttg ttcatattgg 540 taaggtaatg tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacatcaa 660 gaccaagaac catacgaatt cggtgatgtt tttccttgtt cgtgatcgac gaccggtaga 720 taaaccccag gattttggtg aggtatttta catgtttgac aacgaaccca gtacggcgac 780 cgtgaagaat agtcataggg atcgttacca ggtgttgagg aaatggcatg caaccgtcac 840 gggtggtcaa tatgcgagta aggaacaggc gttggtcaag aagtttgtca aggttaacaa 900 ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg agaatgcgtt 960 aatgctttat atggcttgta cccacgctag taacccagtt tatgctacgc ttaagattcg 1020 tatttatttt tatgactctg taacgaattg aaattaataa agtttgaatt ttatatctga 1080 atattggtct acatacattg tttgattaat tacattgtac aatacatgtt caacggcttt 1140 aataactaaa ttaattgaga ttacacctag attgttgaga tatttgagga cttgggtttt 1200 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc ggaaggttag 1260 aaaacacttg tgcactccca gagctttccg aaggttgtag ttgaattgga tcctcattgt 1320 tatgatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ttgaggattt tgaaataaag 1380 gggatttgga acctcccaga taaagacgcc attcgttgaa tgagctgcag tgatgcgttc 1440 ccctgtgcga gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacact 1500 caaggtccac tcgtttcctc ctgtgcgctc tcttcgcttc cctgtgttga actttgattg 1560 gtacccgagt acaacggttg ggtgaggaag acgaatgctg cattttttaa agcccacgct 1620 tttaaagctg agttcttttc ctcttccaag aactctttat agcttgcgtt ggggcctgga 1680 ttgcagagga agattgttgg tatgccccct ttaatttgaa ctggcttccc gtacttggtg 1740 tttgattgcc aatccctttg ggcccccatg aattctttaa agtgtttcag ataatgcggg 1800 tcaacatcat ctataatgtt gaaccacgca tcgtttgaat acactttagg gcttagatct 1860 aggtgaccac ataaatagtt atgtgggcct aatgacctag cccacatcgt tttgcccgta 1920 cgactgtctc cctctaagac taaactcaaa ggacgcagag gccgcgcagc ggcgtccatg 1980 acgttttccg atacccattc ctcaagttct tctggaactt gatcgaaaga agaagataaa 2040 aaaggagaaa cataaacctc caatggaggt gtaaaaatcc tatctaaatt ggcatttaaa 2100 ttatgaaatt gtaacacgta atccttaggt gctaactctc taattactct aagagcctct 2160 gacttactgc ctgcgttaag tgctgcggcg taagcgtcgt tggctgtctg ctgtccccct 2220 cttgcagatc gtccatcgat ctgaaactct ccccattcga gggtgtctcc gtccttgtcg 2280 atgtaggact tgacatctga gcttgattta gctccctgaa tgttcggatg gaaatgtgct 2340 gacctgcttg gggagaccag gtcgaagaat cgctgattct ggcacttgta tttcccctcg 2400 aattggatga gcacgtgaag atgaggttcc ccattctcat gaagctcttt gcaaattttg 2460 atgaattttt tatttgttgg agtttgtagg ttttggattt gggaaagtgc ttcctcttta 2520 gtaagagagc attttggata agtgagaaaa taatttttgg aatatatttg aaagcgttta 2580 gaaggcatgt tgactaaatt tgagtaccga ttgactcgct ctggcaactc tcccctggta 2640 tatcggtacc caatatatag tgagtaccaa atggcatatg tgtaattttg taatgaaatt 2700 caaaatcctc acgctccaaa aagcggccat ccgtataata tt 2742 //