ID GQ244526; SV 1; linear; viral cRNA; STD; VRL; 6554 BP. XX AC GQ244526; XX DT 02-DEC-2012 (Rel. 115, Created) DT 02-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Bayou virus isolate HV F0260003 segment L, complete sequence. XX KW . XX OS Orthohantavirus bayoui OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Hantaviridae; Mammantavirinae; OC Orthohantavirus. XX RN [1] RP 1-6554 RA Cajimat M.N.B., Richter M.H., Milazzo M.L., Fulhorst C.F.; RT "Evolutionary history of the large (L) genomic segments of hantaviruses RT native to the New World"; RL Unpublished. XX RN [2] RP 1-6554 RA Cajimat M.N.B., Jung M., Milazzo M.L., Gerrard S.R., Fulhorst C.F.; RT ; RL Submitted (04-JUN-2009) to the INSDC. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX DR MD5; 623cc43c3501b7be7306a5da50c8b425. XX FH Key Location/Qualifiers FH FT source 1..6554 FT /organism="Orthohantavirus bayoui" FT /segment="L" FT /host="Oryzomys palustris (marsh rice rat)" FT /isolate="HV F0260003" FT /mol_type="viral cRNA" FT /country="USA" FT /isolation_source="lung" FT /collection_date="1996" FT /db_xref="taxon:3052470" FT 5'UTR 1..30 FT primer_bind 1..24 FT gene 31..6492 FT /gene="RdRp" FT CDS 31..6492 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:K7N869" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR016268" FT /db_xref="InterPro:IPR024378" FT /db_xref="UniProtKB/TrEMBL:K7N869" FT /protein_id="ADE10200.1" FT /translation="MEKYREIHQRIRDVAPGTGSAVECMDLLDRLYAVRHDLVDQMIKH FT DWSDNKDVETPIGQVLLMAGVPNDIIQGMEKKIIPNSPTGQVLKSFFRMTPDNYKITGN FT HIEFVEVTVTADVARGIREKRLKYEGGLRFIEELLELEVRKGNLQQVYRITFNVVAVKT FT DGSNISTQWPSRRNDGVVQQMRLVQADINYVREHLIKQDERSSLEAMFNLKFHVTGPKL FT RYFSIPDYRPQPLCNPTIDGLLNYCKQWLTEEHEFVFKEVSGGSVMNVFERNEIEHRDR FT YIESRKPRNFLLLQTTIQGTYLPSTISSDQCNTRIGCLEICKNTPETPVQALATDIAFK FT YVSLDKEEIINYYNPRIHFKPSANVKEPGTLKLGLSQLNPLSKAILDNIGKHKSEKGLF FT GQTIESINISSQIQLNECSKVIEQILSNLEINIGDLSENVPLPKKTTGVDELLGKFYEN FT EIIKYMLGILRKTVAWHIGHLVRDITESLIAHSGLRRSKYWSVHAYDHGNMILFILPSK FT SLEVAGSYIRFFTVFKDGIGLVDNDNIDSRAEIDGITWVYSKVMSIDLNRLLALNISFE FT KALLATATWFQYYTEDQGHFPLQHALRSVFSFHFLLCVSQKMKICAIFDNLRYLIPSVT FT SLYSGYELLIEKFFERPFKSALDVYLYSIIKSLLVSLAQNNKVRFYSKVRLLGLTVDQS FT TVGASGVYPSLMSRVVYRHYRSLISEATTCFFLFEKGLHGNLTEEAKIHLETVEWARKF FT NEKEDKYGDILMKEGYTIELIEKQNVIIEQQLFCQEVVELSAAELNKYLQAKSQVLCAN FT IMNKHWDKPYFSQVRNISLKGMSGSLQEDGHLSSSVTLIEAIRFLNFSQVNPNVIDMYE FT QTKHQKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGD FT RKVLNIQSALEKALRWASGISEIVTSTGKKIRFKRKLMYVSADATKWSPGDNSAKFRRF FT TQAIYDGLSDNKLKCCVVDALKNIYETEFFMSRKLHRYIDNMESKSESVEDFLSFFSGG FT VSAPVKGNWLQGNLNKCSSLFGVAVSLLFKRVWLELFPDLECFFEFAHHSDDALFIYGY FT LEPEDDGTDWFMYVSQQIQAGQYHWHAVNQEMWKSMFNLHEHLLLMGSIKVSPKKTTVS FT PTNAEFLSTFFEGCAVSVPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKALDLGACPQL FT AQLAIVLCTSKVERLYGTADGMINSPISFLKVNKAHIPIPLGGDGSMSIMELATAGIGM FT ADKNILKNAFYSYKHTRRDGDRYILGLFKFLMSLSDDVFQHDRLGEFSFVGKVQWKVFT FT PKSEFEFYDQYSATYLQTWSKQHPVYDYIIPRGRDNLLVYLVRKLNDPSIVTAMTMQSP FT LQLRFRMQAKQHMKVCKLDGEWVTFREVLASADSFASSYQPSEKDLDLFNTLVSCTFSK FT EYAWKDFLNEVRCEVTTARHVHRPKVARTFTVREKDQAIQNPITSVIGYKYASTVDEIS FT DVLDSAFFPDSLSADLQVMKEGVYRELGLDIGLPDVLKRIAPLLYKAGKSRIVIVEGNV FT EGTAESICSYWLKNMSLIKTIKVKPRKEVLKAVSLYGAKDNLSIQDDLAATRICIEVWR FT WCKANNQSVQDWFTALYFENQTLYDWIERFRRKGVIPVDPEIQCMGLLLYDVLGYRSVL FT QMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEIFWDKKEYVLET FT SITQKHVLRLMMEEVSKELTRCGMRFKTEQVNQTRSLVLFKTESGFEWGKPNVPCIVYK FT HCALRTGLRTKQPINKEFMINIQSEGFRAIAQMDVESPRFLLAHAYHTLRDVRFQAVQA FT VGNVWFKTEQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNEL FT LALINKNNILDLNGIEETSEGYSTVTSMSSKQWSEEMSLMSDDDIDDDEEFTIALDDID FT FEQVDLDEDIQHFLQDESAYVGDLLIQTEEVEVKKIRGVTRILEPVKLIKSWVSKGLAI FT DKVYNPVGILLMTRYMSKNYNFHAVPLALMNPYDLTEFESVVKGWGETVNERFPEIDQE FT AQILVREQNIQPEDILPDSLFSFRHVDVLLKRLFPRDPISSFY" FT 3'UTR 6493..6554 FT primer_bind complement(6523..6554) XX SQ Sequence 6554 BP; 2144 A; 1042 C; 1457 G; 1911 T; 0 other; gtagactccg agatagagaa ttccaaaaaa atggagaaat acagagagat acatcagaga 60 atcagggatg ttgcaccagg gactggctca gcagtagaat gtatggactt attagaccgg 120 ctgtacgctg taagacatga tctagtagat cagatgataa agcatgattg gtctgataac 180 aaagatgtag agacacctat tgggcaagtg ttgctgatgg ctggtgtacc taatgatata 240 attcagggga tggaaaagaa aataattcca aatagtccga caggtcaggt attaaaaagc 300 ttctttagaa tgacacctga taattataaa ataacaggaa atcatattga atttgttgag 360 gtgacagtca ctgcagatgt tgcaagagga atccgtgaaa aaaggcttaa gtatgaaggg 420 gggctccgtt tcattgagga gttgctggaa ttagaagtta gaaagggtaa tctacagcaa 480 gtttatagaa taactttcaa tgtagtggca gttaagacag atgggtcgaa catttcaact 540 cagtggccta gcaggcgcaa tgatggtgtt gtccaacaaa tgagattagt gcaggctgat 600 ataaattatg ttagagagca cttaataaag caagatgaga gatcatccct agaagcaatg 660 ttcaacctga aattccatgt tacaggccca aagctaaggt attttagcat accagattat 720 aggccccaac ctctctgtaa tccgacaatt gatggtttgt taaattactg caagcagtgg 780 ctaactgagg aacatgaatt tgtcttcaaa gaagtgagcg ggggaagtgt gatgaatgta 840 tttgaaagaa atgaaataga gcatagagat aggtacattg aatcacgtaa gccacggaat 900 ttcctattac tgcagactac aatacaaggc acttacttgc cttctaccat aagttcagat 960 caatgtaata caaggatagg ctgccttgaa atctgtaaga acacaccaga gacaccagtc 1020 caggcacttg ctacagacat agcattcaag tatgtgagtt tagataaaga ggagatcata 1080 aactattata acccaagaat ccactttaag ccgagtgcta atgttaaaga gcctggtact 1140 ttgaaattag gcctatcaca gcttaaccct ttgtcaaagg ctatccttga taatattggc 1200 aaacacaagt cagagaaagg actatttgga caaactattg aaagtattaa catctctagt 1260 cagatccagt taaatgaatg ctctaaagtt attgaacaaa tactatcaaa tctagaaatc 1320 aacataggtg accttagtga aaatgtgcca ttgcctaaga aaacaacagg tgttgatgag 1380 ttattaggga agttttatga aaacgaaatc atcaaatata tgcttggaat tttaagaaag 1440 actgttgcat ggcatattgg tcatctggtg agagatataa cagaaagttt aattgctcat 1500 tcaggcctgc gtcgctcaaa atactggtct gtccatgctt atgatcatgg gaatatgata 1560 ttatttatcc ttccgtccaa atcacttgaa gttgcaggct cttatataag gttttttaca 1620 gtattcaagg atgggatagg actagtggat aacgacaaca tagactcaag ggctgaaatt 1680 gatgggatca catgggttta ttctaaagta atgagtattg atcttaatag gttgctggca 1740 ttaaatatct cattcgagaa agcattgctg gcaactgcaa cttggtttca gtattatact 1800 gaagaccaag ggcactttcc tctacagcat gctttacgat ctgttttctc cttccatttt 1860 ctactctgtg tatcgcagaa gatgaagata tgtgctatat ttgataatct aaggtactta 1920 attccttctg ttacatcact atattctggt tatgagttat taattgagaa gttctttgag 1980 agaccattta agagtgcatt ggatgtatat ctatattcga ttataaaaag cctattagtg 2040 agtcttgcgc aaaataataa agtaagattt tattcaaagg tcaggctact cgggttgaca 2100 gttgatcaat ccactgttgg tgctagtgga gtttacccct cattgatgtc acgagtggtt 2160 tatagacatt acaggagttt aatttctgag gcgacaacat gcttttttct ttttgagaaa 2220 gggcttcatg gaaacttgac agaagaggca aagatccatc tagaaacagt cgagtgggca 2280 agaaaattta acgagaagga agataaatat ggtgatatat tgatgaaaga aggttataca 2340 attgaattga tagagaaaca gaatgtgatt atagagcagc aactattttg ccaagaagtt 2400 gtagagctta gtgcagctga gttgaataag tatctccagg caaaatccca ggtattatgt 2460 gctaatataa tgaataaaca ctgggataaa ccctatttca gtcaagtacg aaatattagc 2520 ttaaaaggga tgtctggttc tttgcaggaa gatgggcatc tatcctcaag tgtaacactc 2580 atagaagcca tacgatttct gaacttttca caagtgaacc ccaatgttat tgatatgtat 2640 gagcagacta aacatcaaaa ggcacaggct agaattgtaa gaaagtacca gaggacagag 2700 gctgaccgag gctttttcat tacaacactc ccaactagag tacggctaga gatcatagag 2760 gattattttg atgcaattgc taaggttgtc cctgaagaat atatctctta cggtggtgat 2820 agaaaagtat taaatattca gtcggcatta gaaaaagctt tacggtgggc atctggaatt 2880 tctgagatag taacaagtac aggaaagaag ataaggttta aacgaaagct aatgtatgtg 2940 agtgcagatg ccacaaagtg gtcacctggt gataactctg cgaagtttag gcgattcaca 3000 caggcaattt acgatgggct tagtgataac aaactaaaat gctgtgtagt tgatgcattg 3060 aagaacatat atgaaacaga gttcttcatg tcacgaaaat tgcaccgtta tatcgataat 3120 atggagtcca agtctgaatc agttgaagat tttttatcat ttttttctgg tggggtttct 3180 gcccctgtta agggcaattg gttgcagggc aatctgaaca aatgttcatc cttatttggt 3240 gttgcagtat cacttttatt taaacgtgta tggttggaat tattcccaga ccttgaatgc 3300 ttttttgagt ttgcccacca ttctgatgat gcacttttta tatatggata tctggaaccg 3360 gaagatgatg gtactgactg gttcatgtat gtgtcgcagc agatacaagc agggcaatat 3420 cattggcatg cagtcaacca ggaaatgtgg aaaagtatgt ttaatttaca tgaacatctc 3480 ctcctaatgg gttccattaa ggtatcacca aagaaaacaa cagtgtcacc tactaatgcc 3540 gagttcttgt caacattttt tgaaggttgt gcagtttcag ttccctttgt caagatcctc 3600 ttaggttcct tatcagacct acccggtctt ggtttttttg atgacttggc tgcagcacaa 3660 agcaggtgtg tgaaggccct agacctaggg gcctgcccac aactagctca actagctatt 3720 gtgctatgta caagtaaagt tgaaagacta tatggaacag ctgatggtat gataaatagc 3780 cctatttcat tcttaaaggt taataaagcc catattccta tccctttggg gggtgatggt 3840 tcaatgtcaa tcatggagct ggcaactgca gggataggaa tggcagataa gaatatacta 3900 aagaatgcat tttattcata taaacataca aggagagatg gtgatagata tattttaggt 3960 ttatttaagt ttttaatgtc cctgagtgat gatgtattcc agcatgatag gttaggcgag 4020 tttagttttg taggaaaggt tcaatggaaa gtttttaccc caaaatcaga gtttgaattt 4080 tatgatcagt attcggcaac atacttacag acatggtcga aacagcaccc agtatatgac 4140 tatataatac cacggggaag ggataatctt ctggtgtacc tggttcgtaa actaaatgac 4200 ccaagtatag taacagcaat gacaatgcag tcaccccttc aattgagatt taggatgcag 4260 gcaaaacaac atatgaaagt ttgcaagcta gatggtgaat gggtaacatt tcgtgaagta 4320 ctggcatcag cggatagctt tgcatctagt taccagccta gtgaaaagga cctagacttg 4380 tttaatacat tagtcagttg tacattctct aaggagtatg catggaaaga ttttcttaat 4440 gaagttagat gtgaggtaac cacagctaga catgtccata ggcctaaggt agcaagaaca 4500 ttcactgtaa gggagaagga tcaagcaata cagaacccta taacctcagt cattggatat 4560 aagtatgcat caacagtaga tgagattagt gatgttctag atagtgcctt ttttcctgac 4620 tcattatctg cagatcttca ggtgatgaaa gaaggagttt acagagaact gggtttagac 4680 ataggactac cagatgtctt gaagaggatt gcaccattat tatataaagc tggtaaatca 4740 agaatagtta tagttgaagg gaacgtggag ggtactgcag aatcaatatg tagttattgg 4800 cttaagaaca tgtcactaat taagacaata aaggtcaaac ccaggaagga ggttttgaag 4860 gctgtatccc tctatggagc taaagacaat ctcagtatac aggatgacct agcagccact 4920 agaatctgta ttgaagtatg gagatggtgc aaggcaaaca atcagagtgt ccaggattgg 4980 ttcactgcat tatacttcga aaatcaaaca ctatatgatt ggattgagag atttcgcaga 5040 aaaggggtga ttcctgttga tccagagata cagtgtatgg gtctattgct ttatgatgtg 5100 ctaggctata gaagtgtatt acagatgcaa gcaaatagaa gagcttattc aggtaagcaa 5160 tatgatgcct attgtgtgca aacatataat gaggaaacaa agctttatga gggtgatttg 5220 agggtaacat ttaattttgg gttagactgt gcaaggcttg agatattttg ggacaagaaa 5280 gagtatgtgc ttgagacttc tattacacag aagcatgtgt taagactgat gatggaagag 5340 gtctcaaaag aactaacgag gtgcggtatg aggtttaaga cggagcaggt aaatcaaact 5400 aggagcttag tcctgtttaa gactgaatct gggttcgaat ggggtaagcc taatgtccca 5460 tgtattgtct acaaacactg cgcactgagg acaggattga ggacaaagca gcctattaat 5520 aaagaattta tgattaacat ccaatcagaa ggttttagag cgattgcaca gatggatgta 5580 gagagcccaa ggttcctact agctcatgct tatcatactc taagagatgt aagattccaa 5640 gcagtccagg cagtaggaaa tgtgtggttt aaaacagaac agcataaact cttcattaat 5700 cctataattt cctctggtct ccttgagaat ttcatgaaag gattgcctgc agcaataccg 5760 cctgctgcat attcattaat aatgaataag gcaaagatct ctgtagattt attcatgttt 5820 aatgagttgc tagcattaat caacaaaaat aatatcttag atttgaatgg tatagaagag 5880 acatcagaag gttatagtac agtcacatcc atgtcaagca aacaatggtc tgaggaaatg 5940 agtttgatgt ctgatgatga tattgatgat gatgaggaat ttacaattgc tttagatgat 6000 attgattttg agcaggttga tttagatgag gacatacagc atttcttgca ggatgaatct 6060 gcatatgttg gtgacctttt aatccaaact gaagaagtgg aggttaagaa gataaggggt 6120 gtgacccgta tattagagcc tgtaaaatta ataaagagtt gggtatcaaa gggccttgct 6180 atagataaag tttataatcc cgttgggatc ttattaatga ctaggtatat gtcaaaaaat 6240 tataatttcc atgctgtccc tttagcactg atgaacccat atgacctgac agaatttgag 6300 agtgttgtga aaggttgggg agagactgta aatgaaagat ttccagaaat tgaccaggag 6360 gcacaaattc ttgtgagaga gcaaaatata cagccagaag acatattgcc agattcttta 6420 ttctctttta gacatgttga tgtcctacta aaaaggctat tcccacgtga ccccatatca 6480 tcattttatt aagtctttat tacctttatt ttgaataaat ttgcctattg ctcttttctc 6540 ggagcatact acta 6554 //