ID GQ244431; SV 1; linear; genomic RNA; STD; VRL; 3919 BP. XX AC GQ244431; XX DT 20-JUL-2009 (Rel. 101, Created) DT 02-FEB-2010 (Rel. 103, Last updated, Version 2) XX DE Calibrachoa mottle virus isolate California, complete genome. XX KW . XX OS Calibrachoa mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-3919 RX DOI; 10.1016/j.virusres.2009.11.003. RX PUBMED; 19914311. RA Gulati-Sakhuja A., Liu H.-Y.; RT "Complete nucleotide sequence and genome organization of Calibrachoa mottle RT virus (CbMV)--a new species in the genus Carmovirus of the family RT Tombusviridae"; RL Virus Res. 147(2):216-223(2010). XX RN [2] RP 1-3919 RA Gulati-Sakhuja A., Liu H.-Y.; RT ; RL Submitted (04-JUN-2009) to the INSDC. RL USDA-ARS, 1636 E. Alisal St., Salinas, CA 93905, USA XX DR MD5; 61f7a5dc53b739f2e0a1b9384141d4ae. XX FH Key Location/Qualifiers FH FT source 1..3919 FT /organism="Calibrachoa mottle virus" FT /host="Calibrachoa sp." FT /isolate="California" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jan-2002" FT /db_xref="taxon:204928" FT 5'UTR 1..36 FT gene 37..2325 FT /gene="P87" FT CDS 37..2325 FT /codon_start=1 FT /transl_except=(pos:775..777,aa:OTHER) FT /gene="P87" FT /product="P87" FT /note="RNA-dependent RNA polymerase; readthrough stop FT codon" FT /db_xref="GOA:C7E3L1" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C7E3L1" FT /protein_id="ACT36594.1" FT /translation="MGILQLAKELTVGGVCCTTLLCVGVAALEVRLALGAYEFNKQCIS FT NVRGFIESRGQSHPSEPKYAKAEVSPFQAELDDDLEDDAEMRNYLEKHEDKEKDDEGKV FT VVKNVRTTLPRNRHTKGKFLKRLVADTKNHFGGTPTPTDANRLAVMKYMVGRCREHHMV FT DLHIRQVTELAKAAVFTPDILEVQSVQLLNSYPAYRRRCALHKAHQVQVWKELLTNCFH FT KDAWEYIWFRMNGGLARSPFQFHKXGGITFLEGVCTKIARGAHPYLKEKVIPRAPKLRK FT LYLQQSCTSGLQYRVHNNSIANLRRGLLERVFYVENKDTKKLQTCPEPEAGIFKELKTI FT RQQFVRLCGHHTRISTEQFVDCYQGRKRTIYQKAADSLSEIAIDRSDSRLKTFVKAEKF FT CIDLKPDPAPRVIQPRMPRYNVELGRYLKKVEHSAYRALDKIWGGRTVMKGYTVEEVGM FT IISDAWDQFHMPVAVGFDMSRFDQHVSVPALQFEHTCYMSLFPGDRHLQQLLSWQLRNY FT GVGVASNGILRYKVDGKRMSGDMNTALGNCILACLITKHLFPGNYRLINNGDDCVLITE FT RNNLPEITSKLEAGWRRFGFTCISEKPVFVKEEIEFCQMQPVYDGQTYVMVRKPYISMS FT KDAFSLTPWPNEKACQQWLGAVGMCGERLCGKIPILQSYYQAYCRANKGRKPKMDAHEK FT GGMYMLAMNSKRAFGEISQDCRFSFYKAFGITPDQQVAIESLIDCHEISTEPGPPESWS FT ANIPLLIKQ" FT gene 37..777 FT /gene="P28" FT CDS 37..777 FT /codon_start=1 FT /gene="P28" FT /product="P28" FT /note="replication-related protein" FT /db_xref="UniProtKB/TrEMBL:C7E3L2" FT /protein_id="ACT36595.1" FT /translation="MGILQLAKELTVGGVCCTTLLCVGVAALEVRLALGAYEFNKQCIS FT NVRGFIESRGQSHPSEPKYAKAEVSPFQAELDDDLEDDAEMRNYLEKHEDKEKDDEGKV FT VVKNVRTTLPRNRHTKGKFLKRLVADTKNHFGGTPTPTDANRLAVMKYMVGRCREHHMV FT DLHIRQVTELAKAAVFTPDILEVQSVQLLNSYPAYRRRCALHKAHQVQVWKELLTNCFH FT KDAWEYIWFRMNGGLARSPFQFHK" FT gene 2289..2498 FT /gene="P8" FT CDS 2289..2498 FT /codon_start=1 FT /gene="P8" FT /product="P8" FT /db_xref="GOA:C7E3L3" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:C7E3L3" FT /protein_id="ACT36596.1" FT /translation="MEREHPTINKAISTKEKSKQLNSSKDKNKLSGKLTAAKAVANEQA FT RGSVYGGSFTNVAREIKMEIHFHF" FT gene 2413..2664 FT /gene="P9" FT CDS 2413..2664 FT /codon_start=1 FT /gene="P9" FT /product="P9" FT /db_xref="UniProtKB/TrEMBL:C7E3L4" FT /protein_id="ACT36597.1" FT /translation="MNKHVVVFTGVVSLMLLGRLRWRSISIFDFFPPVNIPNINQSIAL FT ALCGLILNCIGKAEPSYSYYSTHDSSKTQYIKINTPDG" FT gene 2657..3685 FT /gene="P37" FT CDS 2657..3685 FT /codon_start=1 FT /gene="P37" FT /product="coat protein" FT /db_xref="GOA:C7E3L5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C7E3L5" FT /protein_id="ACT36598.1" FT /translation="MDNYKNSPVITTLANKGVPWAIKFKTKTWQALTPNQKKLAREALG FT MNLTATVIIPKRARGSPAVAKPNRLGPGTAGKTSTCTGSELLLTLPKQTGYTPLTKSWI FT LNPGQYSPFRRASLMSSMYNKYMFTNIKVRWTTTASFESSGRIVLAYNSDSSDPVPTKA FT GIVEFKTRAENVVTTSFILDIPGDGKYRYCRDSTSNDPKLVDFGRLIVMHYGAAESDSA FT YLGEVLVDYTVVFSEPIPTGSITQQGEQLVSDGPGYAFVTVQPTTFRLTIYGEGKWLVV FT WQSSTATPDVNIKGDGAKAHITSSADSKTVIAVVTAELEGAYLESTTLAAVSGLKWYVS FT RL" FT 3'UTR 3686..3919 XX SQ Sequence 3919 BP; 1187 A; 844 C; 949 G; 939 T; 0 other; cgataaactt agctttatct cggtgattga gcaatcatgg gtatactaca attggcaaaa 60 gaactaaccg taggaggagt gtgttgcaca actctactat gcgttggggt ggcagccctg 120 gaagtacgcc tagctttagg agcatacgag tttaacaagc aatgtatcag caacgttaga 180 ggttttatag aatcaagggg acagtcacac ccttcagaac ccaagtatgc taaagctgaa 240 gtgtcacctt tccaagctga attggatgac gatctggaag atgacgcaga aatgcgaaac 300 tatctggaaa aacatgaaga caaggaaaag gatgacgagg gcaaagtggt ggtgaaaaat 360 gtgcgaacaa ccttacctag aaataggcat accaaaggaa aattcttgaa aaggttagtc 420 gccgacacta aaaaccactt tggcggaacc cccaccccca ctgatgctaa tagactagct 480 gtgatgaaat acatggtggg aaggtgtcga gaacatcata tggtagactt gcacattcgg 540 caggtcactg aactggcaaa agcagcagtg ttcactccag acattctaga agtgcaaagt 600 gtgcaattgc tcaactctta tccagcctac cggcggcggt gcgctctcca caaagcgcat 660 caagtgcagg tgtggaaaga gttgctgact aattgcttcc ataaggatgc ctgggagtat 720 atttggttcc ggatgaatgg gggattggct cgatcccctt ttcagttcca taaatagggg 780 ggtataacct ttctcgaggg tgtgtgtaca aaaatagcca ggggggcaca cccttacctc 840 aaagagaaag ttatacctcg agcccccaaa cttaggaaac tttacctcca acaatcctgc 900 acctccggtt tgcagtaccg ggtgcataat aacagcatcg ccaatttacg cagaggatta 960 ctggagcggg ttttctacgt ggaaaataaa gatacaaaaa aactgcagac ttgtccagag 1020 ccagaagccg gtatttttaa agagcttaaa acgatcagac agcaatttgt aaggttatgc 1080 ggtcatcata cccggatctc cacagagcaa tttgtggatt gttatcaggg caggaaacgc 1140 acaatctacc aaaaagctgc agactcattg agcgaaatag ccatagaccg gtctgactca 1200 cgtctaaaga cttttgtgaa ggcagagaag ttttgtattg atctcaaacc agatccggcc 1260 cccagagtga tccaacctag aatgcccaga tataacgtag agctgggaag atacctaaag 1320 aaggtggaac actctgctta tcgcgcctta gataaaattt ggggtggcag gacggtgatg 1380 aaagggtata ctgtcgaaga agttggtatg ataatcagtg atgcctggga ccaattccac 1440 atgccagttg ctgttggatt tgacatgagt cgattcgacc aacacgtaag tgtgccagca 1500 ttacagttcg aacacacctg ctacatgtct ctatttccag gagacaggca cctgcaacaa 1560 ctactgtcat ggcaattacg aaattatgga gtcggggtag caagcaatgg catccttagg 1620 tacaaagtag atggcaagag aatgagtggt gacatgaata cagctttggg taattgcatc 1680 ttggcatgtt tgataaccaa acatttgttt ccgggtaatt acaggctcat caacaatggt 1740 gacgattgtg ttctcataac agagcgcaac aacctccccg agattacttc caagctggag 1800 gcagggtgga ggagatttgg attcacctgc atttctgaga agcctgtttt tgtcaaagag 1860 gaaatagaat tttgccaaat gcaacctgtc tatgatggtc aaacttatgt catggtccgt 1920 aagccctata tctctatgtc taaggatgct tttagtttaa ccccgtggcc aaacgaaaaa 1980 gcatgtcagc agtggttggg tgcagtaggt atgtgtggag agagactgtg cggaaagata 2040 ccaatcttgc agtcttatta tcaagcatat tgcagagcta acaaagggcg aaagccaaaa 2100 atggatgcgc acgagaaggg gggtatgtac atgctagcta tgaattcgaa gcgggctttt 2160 ggggagattt cccaggattg taggttttca ttctataaag cttttggtat tacacctgac 2220 caacaggttg ccatcgaaag cttgatagat tgccatgaaa tctccacgga acccggcccg 2280 cctgaatcat ggagcgcgaa catcccacta ttaataaagc aataagcacc aaggaaaaga 2340 gtaaacagct gaacagttca aaggataaaa ataaactgag tggcaagtta actgcagcta 2400 aagctgtagc taatgaacaa gcacgtggta gtgtttacgg gggtagtttc actaatgttg 2460 ctagggagat taagatggag atccatttcc atttttgact tctttccccc agtgaatatc 2520 cctaacataa accaatcgat agcacttgca ctctgtggat taatcctaaa ctgtatagga 2580 aaggcagaac cctcatacag ctattattct acacacgaca gcagtaaaac ccaatacatc 2640 aagatcaata cacctgatgg ataactacaa gaactcacct gtcatcacta ccttagctaa 2700 caagggtgtt ccatgggcga tcaagtttaa aactaaaact tggcaggcgt taacgccaaa 2760 ccaaaagaag cttgctcgtg aggcgttagg catgaaccta actgccaccg tgataatacc 2820 caagagagct cgaggtagcc cagctgtagc caagccgaat aggcttggcc ctggtacggc 2880 tggcaaaacg tctacctgca caggatcaga actactccta actttgccca agcagactgg 2940 ttacacgcca cttactaaat catggatatt gaatccaggt caatacagcc ccttccgccg 3000 agcgtcatta atgtccagca tgtacaacaa gtatatgttt acaaacataa aggtgcggtg 3060 gaccactaca gcctctttcg aatcatcagg aagaattgtc ctggcttaca acagtgatag 3120 ttcagacccg gtgcctacta aagctggaat agtggagttt aaaacaaggg cggagaacgt 3180 ggtgaccaca agctttatat tggacattcc aggagatgga aaatatagat actgcagaga 3240 ctcgacaagt aacgacccca aactagtgga cttcggaaga cttatcgtaa tgcactatgg 3300 ggccgcggaa tcagactcag cttacttggg agaggtttta gttgactaca ccgtcgtgtt 3360 ttctgaacca attcctaccg ggtcgatcac gcaacaaggc gaacagctcg tctcagatgg 3420 tccaggatat gcctttgtca ctgtacaacc gactactttt cgcctcacga tatacggaga 3480 gggtaaatgg ctggtagttt ggcagtcgag tactgccact cccgatgtaa atatcaaggg 3540 agacggtgcc aaggcacaca tcacatcatc tgctgacagt aagacggtta tagctgtggt 3600 tacagctgaa ttagaagggg cttacttgga aagtactact ttagctgctg tatcagggct 3660 taagtggtac gtttctcggt tatgaacact aagagttact gccaccaaaa gaggataatc 3720 agaccacttg tagtttgctg ccacaaactg gttgacaagt taatgcctct ctcttagtta 3780 gtaagccgga ttcaagtagg gaatgtggag ggagatgcca tggtggcatc agagcagacc 3840 tggaaatact cttcggaggg gcgccagaac tgcactaaac acttgttatc aggggactgt 3900 tgaggagtct ccccgcccg 3919 //