ID GQ229109; SV 1; linear; genomic RNA; STD; VRL; 3514 BP. XX AC GQ229109; XX DT 02-JUN-2010 (Rel. 105, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate SC-JN segment RNA2, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-3514 RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.; RT "Sequence and phylogenetic analyses of the complete sequence of RNA1 and RT RNA2 segments of Korean Rice stripe virus isolates and with those reported RT isolates from China and Japan"; RL Unpublished. XX RN [2] RP 1-3514 RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.; RT ; RL Submitted (29-MAY-2009) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 0ec0a2724a33b9dec1f7f639155f4b4b. XX FH Key Location/Qualifiers FH FT source 1..3514 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA2" FT /host="Oryza sativa japonica" FT /isolate="SC-JN" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2007" FT /db_xref="taxon:3052763" FT CDS 81..680 FT /codon_start=1 FT /product="NS2" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:D7NNF0" FT /protein_id="ADE60726.1" FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI FT WLMGCCEEFTDPAHRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV FT TNGIPISKNFNEIALPDPSPSEDYVLVGAHECPILM" FT CDS complement(980..3484) FT /codon_start=1 FT /product="putative membrane glycoprotein" FT /db_xref="GOA:D7NNF1" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:D7NNF1" FT /protein_id="ADE60727.1" FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ FT PDQAKKPEEIMNHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED FT SIAPNTNVSDKVKRKGRKVENGLIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIRYVERDGVDMLE FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKMSLNGTSCKITGIER FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS FT IIPIGLILKTIRSFLDDIRQVD" XX SQ Sequence 3514 BP; 1075 A; 748 C; 627 G; 1064 T; 0 other; acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga aatcgtccac 60 ggagaatctc gtcttcagca atggcattac tcctcttcaa tgatcactac tatggttttc 120 tccataagta taaaagacat actggatcat atgataatct cttcaatttg aggtgctcta 180 aagaagacca ctatttgaac tctcttgatg ccatctggct catgggatgc tgtgaggagt 240 tcacagatcc agctcataga gcacatgctc tcgccatagc aactgaatct aacataggtt 300 tggttaacaa taatgccgtg atatctgatg agaggctgaa atgctggctc tgtaaaaaac 360 catctcatca acagactgag catctgaaac tgatcctgtt acccaacttg gtcaacgggt 420 ttcagtttgc tacagagtca tatcacatat gcctgaagga ccactctgga gatgacccta 480 cacaatatct tagtgagttc tcctttccca caggattaag agcctactac aagccacatc 540 agaagatgga gcataaacat atagttgtta ccaatggaat acccatctca aagaatttca 600 acgaaattgc tctccctgac ccatctccta gtgaagacta tgtcttggtt ggagcacatg 660 agtgccctat tctaatgtga acttggaaga tgatattgac tgtggcctac aagcacatac 720 acacactggc cacaaacact acaatggtgc tatgcatcaa tttataatct tatatcctcg 780 aaatggtgct acgcaccaca tccggatggt gagcctagct cactttgatt attgagtaaa 840 ttaatgaaaa caaacaagta taattgtaac tataatagct ttctcattat tatgtgatca 900 agacacttaa aactacacac ttaagcttaa gggaagatta tcaatagaaa tatgggcata 960 catgagtgaa cctattggct taatcaacct gtctgatgtc atctagaaaa ctcctaatgg 1020 tcttcaaaat gagtcctatt ggtattattg aagctactag agataacttt gggttgtcct 1080 tgactatccc ggctagcaat tccatccaat tggtggtgct ggtcttcaca gcttcaaaag 1140 agctcacatc aaggctcggc gatatcacgg tgatttccaa tggtgaaaca tcatacttgc 1200 acataagagt atcaccggag tatatgaatt tgcatttgat catggaacca actgtgaccg 1260 aatagtaagt tgttgttatg catgttcctt ttttaatgtt gttcagtatc atagggcaaa 1320 ctgccaatcc ttcgcaggcc aagatatcac tgagatagac tttgtttgaa gattcaatgc 1380 ttacagttgt cttcttaaat ttcctctcta ttccagtgat cttgcatgag gtcccattga 1440 gagacatctt actagttatt atactggtga tcgcttcctt gaattgcaag ttcagctcta 1500 ctgggaatag atccaaagtg cccagagata taccagagct agagaccaat acatccttta 1560 agggttcact tttcacatgt tctagcatat ccactccatc cctctctaca tacctaataa 1620 ctggcaaatc ttcatttgaa agtatcttag ttttacactt actgctaaga acaacagcat 1680 cttctttagt tggacactgt atgttgccta gtaactcctt gtcaaaagac cctaaatcat 1740 ttgcggtcct taaataagct ttcccatcgc actctgcata ttctctaggc attctggcac 1800 tattatagtt tgacaatgat attgaaacta aagggctatc atacttacta gtaatgcctc 1860 ctagttcttt caacacatgc ccattttttt gaatataccc aactatttca aacttagtat 1920 ccatgcactt cataatagtg catgctcttg aagatgttgg ttcatattct attctcttcc 1980 aattgtagtg gtatgctggg caataggaaa agatgtggaa atcagtgaca caataatcaa 2040 agctcagact agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc 2100 cttcaaaaca tttccattcc tctctagaga tcaccctttt gaaactgttg gtataataca 2160 gaggcactga taagcacata acccgaacac tattaaatcg tatcttgtag acatcagtcg 2220 atgtcttgaa gcagaaatcc tgaggagtgt ttagtagggt caatttcatt ttagagatga 2280 agtcacaact attatttgtg cacctctcta tattggaaat gcttgaaaca aggtcttgac 2340 aggattctgc agaacaaact aatagcaaga tcatcaatac atatggtatg aatatcagcc 2400 cattctctac ttttctaccc ttcctcttta ctttatcgga aacattagtg ttaggtgcaa 2460 tggagtcttc tacaactaac aggccctcct ctgcttcatc cactactcta actgttgaca 2520 tatctacaga cacttcatct acaacaggtc ttctatgaca tagtccaacc attgaatata 2580 gtaccttttt tagcagccaa aatgcaggtt ttaggaaaaa taagatattc attatggtga 2640 tgagagtgaa tactatcact ataacaaaga acaagattat agagtacaat gaatatctat 2700 agatgtgaga gcattgataa ttctttatcc tcattatcat gtccattctc tcatacttat 2760 cacaaatctc tcctggatga caagtaacat tttgacaacc acccttatca caaacttcaa 2820 tagtatcatc ataagttgga agtttgaccg attcacaaga agggatagaa aatgtttggt 2880 cactaacatt gacctcacat gcagaattga tataatacag cacaccatct gtgcaagagg 2940 gcttgattgc aacaccatga ttcatgattt cttctggttt cttagcttgg tcaggctgaa 3000 tgcatgccct agtctcaaca gcatacacta ttcccaagaa accagttttg agatttgagt 3060 atgaaatctt ttcagaattg gaattagtta tcaatagagg gcttgatgtg tattctgttt 3120 gctgtatgcc aacaagagat acattctgca aaatagcatc atcgcaactg agatagacgt 3180 gaccaccgaa cttagagaag gaaggatgga gtggcagctt gtaatcgtag tttccagtgt 3240 agcatgtctc aaagtaattc acactagccc tgttgtaaca aatcagacca ttttcaatga 3300 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg caagggacct 3360 tgacaatctc agatggctcc ctctccctgt tcctcatcca agaatgggtg tcagggaaag 3420 gtattggtgc accccacgcc atattaaaga ttgtggtgta gatgaaatat gatttaaaat 3480 gcatcttcga agaagttata cccagacttt gtgt 3514 //