ID GQ229107; SV 1; linear; genomic RNA; STD; VRL; 3514 BP. XX AC GQ229107; XX DT 02-JUN-2010 (Rel. 105, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate MA-JN segment RNA2, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-3514 RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.; RT "Sequence and phylogenetic analyses of the complete sequence of RNA1 and RT RNA2 segments of Korean Rice stripe virus isolates and with those reported RT isolates from China and Japan"; RL Unpublished. XX RN [2] RP 1-3514 RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.; RT ; RL Submitted (29-MAY-2009) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; ed9126723b40bff6555a0dea12d0d220. XX FH Key Location/Qualifiers FH FT source 1..3514 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA2" FT /host="Oryza sativa japonica" FT /isolate="MA-JN" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2007" FT /db_xref="taxon:3052763" FT CDS 81..680 FT /codon_start=1 FT /product="NS2" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:Q7T3Z3" FT /protein_id="ADE60722.1" FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV FT TNGIPISKNFNEIALPDPSPSEDYVLVGAHECPILM" FT CDS complement(980..3484) FT /codon_start=1 FT /product="putative membrane glycoprotein" FT /db_xref="GOA:D7NNE7" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:D7NNE7" FT /protein_id="ADE60723.1" FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED FT SIAPNTNVSDKAKRKGRKVEDGLIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIRYVERDGVDMLE FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS FT IIPIGLILKTIRSFLDDIRQVD" XX SQ Sequence 3514 BP; 1074 A; 746 C; 632 G; 1062 T; 0 other; acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga aatcgtccac 60 ggagaatctc gtcttcagca atggcattac tcctcttcaa tgatcactac tatggttttc 120 tccataagta taaaagacat actggatcat atgataatct cttcaatttg aggtgctcta 180 aagaagacca ctatttgaac tctcttgatg ccatctggct catgggatgc tgtgaggagt 240 tcacagatcc agctcttaga gcacatgctc tcgccatagc aactgaatct aacataggtt 300 tggttaacaa taatgccgtg atatctgatg agaggctgaa atgctggctc tgtaaaaaac 360 catctcatca acagactgag catctgaaac tgatcctgtt acccaacttg gtcaacgggt 420 ttcagtttgc tacagagtca tatcacatat gcctgaagga tcactctgga gatgacccta 480 cacaatatct tagtgagttc tcctttccca caggattaag agcctactac aagccacatc 540 agaagatgga gcataaacat atagttgtaa ccaatggaat acccatctca aagaatttca 600 acgaaattgc tctccctgac ccatctccta gtgaagacta tgtcttggtt ggagcacatg 660 agtgccctat tctaatgtga acttggaaga tgatatagac tgtggcttac aggcacatac 720 acacactgga cacaaacact acaatggtgc tatgcatcaa tttataatct tatatcctcg 780 aaatggtgct acgcaccaca tccggatggt gagcctagct cactttgagt attgagtaaa 840 ttaatgaaaa caaacaagta taattgtaac tacaatagct ttctcattat tatgtgatca 900 agacacttaa aactacacac ttaagcttaa gggaagatta ttaatagaaa tatgggcata 960 catgagtgaa cctattggct caatcaactt gtctaatgtc atctagaaaa ctcctaatgg 1020 tcttcaaaat gagtcctatt ggtattattg aagctactag agacaacttt gggttgtcct 1080 tgactatccc ggctaacaat tccatccaat tggtggtgct ggtcttcaca gcttcaaaag 1140 agctcacatc aaggctcggc gatatcacgg tgatttccaa tggtgaaaca tcatacttgc 1200 acataagagt atcaccggag tatatgaatt tgcatttgat catggaacca actgtgaccg 1260 aatagtaagt tgttgttatg catgttcctt ttttaatgtt gttcagtatc atagggcaaa 1320 ctgccaatcc ttcgcaggcc aagatatcac tgagatagac tttgtttgaa gattcaatgc 1380 ttacagttgt cttcttaaat ttcctctcta ttccagtgat cttgcatgag gtcccattga 1440 gagatatctt actagttatt atactggtga tcgcttcctt gaattgcaag ttcagctcta 1500 ctggaaatag atccaaagtg cccagagata taccagagct agagaccaac acatccttta 1560 agggttcact tttcacatgc tctagcatat ccactccatc cctctctaca tacctaataa 1620 ctggcaaatc ttcatttgaa agtatcttag ttttacactt actgctaaga acaacagcat 1680 cttctttagt tggacactgt atgttgccta gtaactcctt gtcaaaagac cctaaatcat 1740 ttgcggtcct taaataagct ttcccatcgc actctgcata ttctctaggc attctggcac 1800 tattatagtt tgacaatgat atggaaacta aagggctatc atacttacta gtaatgcctc 1860 ctagttcttt caacacatgc ccattttttt ggatataccc aactatttca aacttagtat 1920 ccatgcactt cataatggtg catgctcttg aagatgttgg ttcatattct attctcttcc 1980 aattgtagtg gtatgctggg caataggaaa agatgtggaa atcagtgaca caataatcaa 2040 agctcagact agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc 2100 cttcaaaaca tttccattcc tctctagaga tcaccctttt gaaactgttg gtataataca 2160 gaggcactga taagcacata acccgaacac tattaaatcg tatcttgtag acatcagtcg 2220 atgtcttgaa gcagaaatcc tgaggagtgt ttagtagggt caatttcatt ttagagatga 2280 agtcacaact attatttgtg cacctctcta tattggaaat gcttgaaaca aggtcttgac 2340 aggattctgc agaacaaact aatagcaaga tcatcaatac atatggtatg aatatcagcc 2400 catcctctac ttttctaccc ttcctctttg ctttatcgga aacattagtg ttaggtgcaa 2460 tggagtcttc tacaactaac aggccctcct ctgcttcatc cactactcta actgttgaca 2520 tatctacaga cacttcatct acaacaggtc ttctatgaca tagtccaacc attgaatata 2580 gtaccttttt tagcagccaa aatgcaggtt ttaggaaaaa taagatattc attatggtga 2640 tgagagtgaa tactatcact ataacaaaga acaagattat agagtacaat gaatatctat 2700 agatgtggga gcattgataa ttctttatcc tcattatcat gtccattctc tcatacttat 2760 cacaaatctc tccagggtga caagtaacat tttgacaacc acccttatca caaacttcaa 2820 tagtatcatc ataagttgga agtttgaccg attcacaaga agggatagaa aatgtttggt 2880 cactaacatt gacctcacat gcagaattga tataatacag cacaccatct gtgcaagagg 2940 gcttgattgc aacaccatga tttatgattt cttctggttt cttagcttgg tcaggctgaa 3000 tgcatgccct agtctcaaca gcatacacta ttcccaagaa accagttttg agatttgagt 3060 atgaaatctt ttcagaattg gaattagtta tcaatagagg gcttgatgtg tattctgttt 3120 gctgtatgcc aaccagagat acattctgca gaatagcatc atcgcaactg agatagacgt 3180 gaccaccgaa tttagagaaa gaaggatgga gtggtagctt gtaatcgtag tttccagtgt 3240 agcatgtctc aaagtaattc acactagccc tgttgtaaca aatcagacca ttttcaatga 3300 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg caagggacct 3360 tgacaatctc agatggctcc ctctccctgt tcctcatcca agaatgggtg tcagggaaag 3420 gtattggtgc accccacgcc atattaaaga ttgtggtgta gatgaaatat gatttaaaat 3480 gcatcttcga agaagttata cccagacttt gtgt 3514 //