ID GQ229106; SV 1; linear; genomic RNA; STD; VRL; 3514 BP. XX AC GQ229106; XX DT 02-JUN-2010 (Rel. 105, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate JD-JN segment RNA2, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-3514 RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.; RT "Sequence and phylogenetic analyses of the complete sequence of RNA1 and RT RNA2 segments of Korean Rice stripe virus isolates and with those reported RT isolates from China and Japan"; RL Unpublished. XX RN [2] RP 1-3514 RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.; RT ; RL Submitted (29-MAY-2009) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 1015d50c671ad711287e3261317e4ea3. XX FH Key Location/Qualifiers FH FT source 1..3514 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA2" FT /host="Oryza sativa japonica" FT /isolate="JD-JN" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2007" FT /db_xref="taxon:3052763" FT CDS 81..680 FT /codon_start=1 FT /product="NS2" FT /db_xref="GOA:Q89717" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/Swiss-Prot:Q89717" FT /protein_id="ADE60720.1" FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV FT TNGIPISKNFNEIALPDPSPSDDYVLVGAHECPILM" FT CDS complement(980..3484) FT /codon_start=1 FT /product="putative membrane glycoprotein" FT /db_xref="GOA:D7NNE5" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:D7NNE5" FT /protein_id="ADE60721.1" FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC FT SARAPPCKLTYELNGYFIENGMICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHIY FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYKYSLYSIILFFVIVIVFTL FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED FT SIAPNTNVSDKVKRKGRKVENGLIFIPYILMILLLVCSAKSCQDLVSSISNIERCTNNS FT CDFISKMKLTLLSTPQDFCFKTSTEVYKIRVNSVRVMCLSVPLYYTNRFKRVISGEEWK FT CFEGEGCGTDGTHSVWGESATLSFDGCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKKKNKILSNEDLPVIRYIERDGVDMLE FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS FT IIPIGLILKTIRSFLDDIRQVD" XX SQ Sequence 3514 BP; 1065 A; 746 C; 632 G; 1071 T; 0 other; acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga aatcgtccac 60 ggagaatctc gtcttcagca atggcattac ttctttttaa tgatcactac tatggttttc 120 tccataagta taaaaggcat actggatcat atgataatct cttcaatctg aggtgctcta 180 aagaagacca ctatctgaac tctcttgatg ccatctggct catgggatgc tgtgaggagt 240 tcacagatcc agctcttaga gcacatgctc tcgccatagc aactgaatct aacataggtt 300 tggttaacaa taatgccgta atatctgatg agaggttgaa gtgctggctc tgtaaaaaac 360 catctcacca acagactgag catctgaaac tgatcctgtt acccaacttg gtcaacgggt 420 ttcagtttgc tacagagtca tatcacatat gcctgaagga tcactctgga gatgacccta 480 cacaatatct tagtgaattc tcctttccca caggattgag agcctactac aagccacatc 540 agaagatgga gcataaacat atagttgtaa ccaatggaat acccatctca aagaatttca 600 acgaaattgc tctccctgac ccatctccta gtgatgacta tgtcttggtt ggagcacatg 660 agtgccctat tctaatgtga acttggaaga agatgttgac tgtggtctac aggcacatac 720 acacactggc cacaaacact acaatggtgc tatgcatcaa tttataatct aatatcctcg 780 aaatggtgct acgcaccaca tccggatggt gagcctagct cactttgatt attgagtaaa 840 gtaatgaaaa caaacaagta taattgtaac taaaataact ttcttactat tatgtgatca 900 atacgcttaa aactacacac ttaagcttaa gggaagatta ctaatagaaa tatgggcata 960 catgagtgaa cctattggct taatcaacct gtctgatgtc atctaggaaa ctcctaatag 1020 tcttcaaaat gagtcctatt ggtattattg aagctactag agataacttt ggattatcct 1080 tgactatccc ggctagcaat tccatccaat tggtggtgct ggtctttaca gcttcaaaag 1140 agctcacatc aaggctcggc gatatcactg tgatttccaa tggtgaaaca tcatacttgc 1200 acataagagt atcaccagag tatatgaatt tgcatttgat catggaacca actgtgaccg 1260 aatagtaagt tgttgttatg catgtgcctt ttttaatatt gttcagtatc atagggcaaa 1320 ctgccaatcc ctcgcaagcc aagatatcac tgagatagac tttgtttgaa gattcaatgc 1380 ttacagttgt cttcttaaat ttcctctcta tcccagtaat cttgcatgag gtcccattga 1440 gggatatctt actagttatt atactagtga tcgcttcctt gaattgcaag ttcagctcta 1500 ctgggaatag atccaaagtg cccagagata taccagagct agagaccaac acatccttta 1560 agggttcact tttcacatgc tctagcatat ccactccatc cctctctata tatctaataa 1620 ctggcaaatc ttcatttgaa agtatcttat tttttttctt actgctaaga acaacagcat 1680 cttctttagt tggacactgt atgttgccta gcaactcttt gtcaaaagat cctaaatcat 1740 ttgcagtccg caaataagct ttcccatcac actctgcata ttctctaggc attctggcac 1800 tattatagtt tgacaatgat attgaaacta aagggctatc atacttacta gtaatgcctc 1860 ctagttcttt caacacatgt ccattttttt gaatataccc cactatttca aacttagtgt 1920 ccatgcactt cataatggtg caggctctag aagatgttgg ttcatattct attctcttcc 1980 aattgtagtg gtatgctggg caataggaaa agatgtggaa atcagtgaca caaccatcaa 2040 agctcagagt agcggattcc ccccatacag agtgtgttcc atctgttccg caaccttccc 2100 cttcaaagca tttccactcc tctccggaga tcaccctttt gaacctgttg gtataataca 2160 gaggcactga taagcacata actcgaacac tattaactcg tatcttgtag acctcagtcg 2220 atgtcttgaa gcagaaatcc tgaggagtgc ttagtagggt caatttcatt ttagagataa 2280 agtcacaact attatttgtg catctctcta tattggaaat gcttgaaaca aggtcttgac 2340 aggatttagc agaacaaact aatagcaaga tcatcaatat atatggtatg aatatcagcc 2400 cattctctac ttttctaccc ttcctcttta ctttatcgga aacatttgtg ttaggtgcaa 2460 tggagtcttc tacaactaac aggccctcct ctgcttcatc cactactcta actgttgaca 2520 tatctacaga tacttcatct acaacaggtc ttctatggca tagcccaacc attgaatata 2580 gtactttctt tagcagccag aatgcaggtt tcaggaaaaa taagatattc attatggtga 2640 tgagagtaaa tactatcact ataacaaaga acaagattat agagtacaat gaatatttat 2700 agatgtgaga gcattggtaa ttctttatcc tcattatcat gtccattctt tcatacttgt 2760 cacaaatctc tcctgggtga caagttacat tttgacaacc acccttatca caaacttcaa 2820 tagtatcatc ataagttggt agtttgaccg attcacaaga agggatggaa aatgtttggt 2880 cactcacatt gacctcacat gcagaattga tataatacag cacaccatct gtgcaagagg 2940 gcttgattgc aacaccatga tttatgattt cttctggctt cttagcttgg tcaggttgaa 3000 tgcatgccct agtttcaaca gcatacacta ttcccaagaa accagttttg agatttgagt 3060 atgaaatctt ttcagaattg gaattggtta tcaatagagg gcttgatgtg tattctgttt 3120 gctgtatgcc aaccagagac acattctgca gaatagcatc atcgcaactg agatagatgt 3180 gaccaccgaa cttagagaaa gaaggatgga gaggaagctt gtaatcgtag tttccagtgt 3240 agcatgtctc aaagtaattc acactagccc tgttgtaaca aatcatacca ttttcaatga 3300 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg caagggacct 3360 tgacaatctc agatggttcc ctctccctgt tcctcatcca agaatgggtg tcagggaaag 3420 gtattggtgc accccacgcc atattaaaga ttgtggtgta gatgaaatat gatttaaaat 3480 gcatcttcga agaagttata cccagacttt gtgt 3514 //