Dbfetch
ID GQ229104; SV 1; linear; genomic RNA; STD; VRL; 3514 BP. XX AC GQ229104; XX DT 02-JUN-2010 (Rel. 105, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate GS-JB segment RNA2, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-3514 RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.; RT "Sequence and phylogenetic analyses of the complete sequence of RNA1 and RT RNA2 segments of Korean Rice stripe virus isolates and with those reported RT isolates from China and Japan"; RL Unpublished. XX RN [2] RP 1-3514 RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.; RT ; RL Submitted (29-MAY-2009) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 7721e2bebd8327ad4aca01619523d29c. XX FH Key Location/Qualifiers FH FT source 1..3514 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA2" FT /host="Oryza sativa japonica" FT /isolate="GS-JB" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2007" FT /db_xref="taxon:3052763" FT CDS 81..680 FT /codon_start=1 FT /product="NS2" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:D7NNE0" FT /protein_id="ADE60716.1" FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFSTGLRAYYKPHQKMEHKHIVV FT TNGIPISKNFNEIALPDPSPSDDYVLVGAHECPILM" FT CDS complement(980..3484) FT /codon_start=1 FT /product="putative membrane glycoprotein" FT /db_xref="GOA:D7NNE1" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:D7NNE1" FT /protein_id="ADE60717.1" FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ FT PDQAKRPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCEAVKLPTYDDTI FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED FT SIAPNTNVSDKVKRKGRKVENGLIFIPYILMILLLVCSVESCQDLVSSISNIERCTNNS FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIKYIERDGVDMLE FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTIGSMIKCKF FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS FT IIPIGLILKTIRSFLDDIRQVD" XX SQ Sequence 3514 BP; 1073 A; 730 C; 628 G; 1083 T; 0 other; acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga aatcgtccac 60 ggagaatctc gtcttcagca atggcattac tccttttcaa tgatcactac tatggttttc 120 tccataaata taaaagacac actggatcat atgataatct cttcaattta aggtgctcta 180 aagaagacca ctatttgaac tctcttgatg ccatctggct catgggatgc tgtgaggagt 240 tcacagatcc agctcttaga gctcatgctc tcgccatagc aactgaatct aacataggtt 300 tggttaacaa taatgccgtg atatctgatg agaggctgaa gtgctggctc tgtaagaaac 360 catctcatca acagactgag catctgaaac tgatattgtt acccaatttg gtcaacgggt 420 ttcagtttgc tacagagtca tatcacatat gcctgaagga tcactctgga gatgacccta 480 cacaatatct tagtgaattc tccttttcca caggattaag agcctactac aagccacatc 540 agaagatgga gcataaacat atagttgtaa ccaatggaat acccatctca aagaatttca 600 acgaaattgc tctccctgac ccatctccta gtgatgacta tgtcttggtt ggagcacatg 660 agtgccctat tctaatgtga acttggaaga tgatattgac tgtggcctac aggcacatac 720 acacactggc ctcaaacact acaatggtgc tatgcatcaa tttataatct catatcctcg 780 aaatggtgct acgcaccaca tccggatggt gagcctagct cactttgatt attgagtaaa 840 ttaatgaaaa caaacaagtg taattgtaac tataatagct ttcttatttt tatgtgatca 900 atacgcttaa aactacacac ttaagattaa gggaagatta ctaatggaaa tataagtata 960 catgaatgaa cctattggct taatcaacct gtctaatgtc atctagaaaa ctcctaatag 1020 tcttcaaaat gagtcctatt ggtattattg aagcaactag agataacttt gggttatcct 1080 tgactatccc ggctagcaat tccatccaat tggtggtgct ggtcttcaca gcttcaaaag 1140 agctcacatc aaggctcggt gatatcactg tgatttccaa tggtgaaaca tcatacttgc 1200 acataagagt atcgccggag tatatgaatt tgcatttgat catggaacca attgtgaccg 1260 aatagtaagt tgttgttatg catgtgcctt ttttgatgtt gttcagtatc atagggcaaa 1320 ctgccaatcc ttcgcaggcc aagatatcac tgagatagac tttgtttgaa gattcaatgc 1380 ttacagttgt cttcttaaat ttcctctcta taccagtaat cttgcatgag gtcccattga 1440 gagatatctt actagttatt atactagtga tcgcttcctt gaattgcaag ttcagctcta 1500 ctgggaatag atccaaagtg cccagagata taccagagct agagaccaac acatccttta 1560 agggttcact tttcacatgc tctaacatgt ccactccatc cctctctata tacttaataa 1620 ctggcaaatc ttcatttgaa agtatcttag ttttacactt actgctaaga acaacagcat 1680 cttctttagt tggacactgt atgtttccta gtaactcttt gtcaaaagac cctaaatcat 1740 ttgcggtcct taaataagct ttcccatcgc actctgcata ttctctaggc attctggcac 1800 tattatagtt tgacaatgat atggaaacta aagggctatc atacttacta gtaatgcctc 1860 ctagttcttt caacacatgc ccattttttt gaatataacc aactatttca aacttagtat 1920 ccatgcactt cataatggtg catgccctag aagatgttgg ttcatactct attctcttcc 1980 aattgtagtg atatgctggg caataggaaa agatgtgaaa atcagtgaca caataatcaa 2040 agctcagact agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc 2100 cttcaaagca cttccattcc tctctagaga tcaccctttt gaaactgttg gtataataca 2160 gaggcactga taagcacata actcgaacac tattaaatcg tattttgtag acatcagtcg 2220 atgtcttgaa gcagaaatcc tgaggagtat ttaatagggt caacttcatt ttagagatga 2280 agtcacaact attatttgtg cacctctcta tattggaaat gcttgaaaca aggtcttgac 2340 aggattctac agaacaaact aatagtaaga tcatcaatat atatggtatg aatatcagcc 2400 cattctctac ttttctaccc ttccttttta ctttatcaga aacattagtg ttaggtgcaa 2460 tggagtcttc tacaactaat aggccctcct ctgcttcatc cactactcta actgttgaca 2520 tatctacaga tacttcatct acaacaggtc ttctatgaca tagtccaacc attgaatata 2580 gtaccttctt tagcagccaa aatgcaggtt ttaggaaaaa taagatattc attatggtaa 2640 tgagagtaaa tactatcact ataacaaaga acaagattat agagtataat gagtatctat 2700 agatgtgaga gcattgataa ttctttatcc tcattatcat gtccattctc tcatacttgt 2760 cacaaatctc tcctgggtga caagttacat tttgacaacc acccttatca caaacttcaa 2820 tagtatcatc ataagttgga agtttgactg cttcacaaga agggatagaa aatgtttggt 2880 cactcacatt gacctcacat gcagaattga tgtaatatag tacaccatct gtgcaagagg 2940 gcttgattgc aacaccatga tttatgattt cttctggtct cttagcttgg tcaggttgaa 3000 tgcatgccct agtctcaaca gcatacacta ttcccaagaa accagtcttg agattagagt 3060 atgaaatctt ttcagaattg gaattggtta tcaatagagg gcttgatgtg tattctgttt 3120 gctgtatgcc taccagagac acattttgca gaatggcatc atcgcaactg aggtagacgt 3180 gaccaccgaa cttagagaaa gaaggatgga gggggagctt gtaatcgtag tttccagtgt 3240 agcatgtctc aaagtaattc acactagctc tgttgtaaca gatcagacca ttttcaatga 3300 aatatccatt cagctcgtaa gtcaatttgc agggaggagc tctggcactg caagggacct 3360 tgacaatctc tgatggttcc ctctccctgt tcctcatcca agaatgggtg tcagggaaag 3420 ggattggtgc accccacgcc atattaaaga ttgtggtgta gatgaaatat gatttaaaat 3480 gcatcttcga agaagttata cccagacttt gtgt 3514 //