ID GQ222382; SV 1; linear; genomic RNA; STD; VRL; 3981 BP. XX AC GQ222382; XX DT 14-OCT-2009 (Rel. 102, Created) DT 31-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Turnip ringspot virus isolate B segment RNA2, complete sequence. XX KW . XX OS Turnip ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus; OC unclassified Comovirus. XX RN [1] RP 1-3981 RX DOI; 10.1007/s00705-009-0511-9. RX PUBMED; 19774335. RA Koloniuk I., Petrzik K.; RT "Complete genome sequence of turnip ringspot virus"; RL Arch. Virol. 154(11):1851-1853(2009). XX RN [2] RP 1-3981 RA Koloniuk I., Petrzik K.; RT ; RL Submitted (28-MAY-2009) to the INSDC. RL Department of Plant Virology, Biology Centre Academy of Sciences of the RL Czech Republic, Institute of Plant Molecular Biology, Branisovska 31, Ceske RL Budejovice 370 05, Czech Republic XX DR MD5; d5c535a2d19cb903c497251377293c35. XX CC GenBank Accession Numbers GQ222381-GQ222382 represent the complete CC genome of Turnip ringspot virus isolate B. XX FH Key Location/Qualifiers FH FT source 1..3981 FT /organism="Turnip ringspot virus" FT /segment="RNA2" FT /host="cauliflower" FT /isolate="B" FT /mol_type="genomic RNA" FT /country="Croatia" FT /db_xref="taxon:392504" FT CDS 416..3703 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D0E0H0" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D0E0H0" FT /protein_id="ACX53647.1" FT /translation="MNNIKGRCYSISDLTPGYRGENARDFSYRPQEKYVKFLKVSPLSF FT LFFLIFCHIVTYCEILFKVCFEFNSWAGNTLRDWLLSIERKANVEYKRLEAISSWSAGR FT RVTIQHSFFTKKMETVMERGIAAKALELRNDAAMNKGKRFVGLKDHIPAGKDLYVYKQR FT LFEMLKGSKRSREVDVSRIKGCEVVEMKHIDVGTLSPGENQIINVKIVRDDMLPQPEQS FT DYAMVTHSNESKYANAMHVGAIEVIFNSYASPTSDIVGGMILVDTCHKSVANAVRSVFV FT TGLAGGKLIRVLMYPNTLVEIGPKMNDRFKLVCTTSNSDISEGFNLASVKVNVVGGTQS FT LMTQYVPQPLLENLLNKEQGTVVEYLGQLSYVMHHSNHITEEFLANQTMEFDLGKKLHL FT TPSGSGASLTKSASMRYVVGPKQKLLNAESDDGVSSFDKRREEARKSVGMRTDASYVDP FT VFGMTQRAFGQASTTQSLLNKFASTRQIEGTPVETKIARTKIVLTKVMAGGNILYTERL FT SDALSNVEQRAAIAFQRTHVQHKKLVALATINVPENTGCALMMCYNSGIRGKAVVDAYT FT ASAEASIIWNPACQQQARLEINVNPCKSAWSYQYLRQSKGVFNVVCISGWTTTPSTDLS FT LTIDWYLSDKDAEPETYCAVGINPKIVLNRWMGKLSFPQGTDVTLRRMPLAIGGGAGGT FT GLVYMNMPNALCSLWRYMRGGMSFEIIKLSSPYIKATIAFFIAFTDVDATVPNLEAYPH FT KLVQFAAVQDRVTISFDKEDFVMAWSTQVHNSVPLSEDGCPYLYAVVHDSVGSTIPGDF FT NIGVFLKEMNGVESIGRHPGWKGARPLAVSPQGLRKSSSGVWNELFMVRGPPEAKSTDV FT VQFAIDLVGVGIATKNPGTWSVETNNSPMNNLMRTATWKSGTFHFQVIMEGNPLIKRGD FT WSSYCEVSLTQSTKVTTMASRNWVMKDPTSWELEFDIKIEGPNDGFENWESHFSNQTSW FT FLVFSVFNPDQSTVFVVNGMIDDDCWFAGNTLMPPFLEPESVNSRHSFLSSVQFDYGTT FT FSRRTPSLPPDGEDEESSKSGRIRSLERYRERDDQNRGNLATYMRRT" XX SQ Sequence 3981 BP; 1168 A; 709 C; 945 G; 1159 T; 0 other; tattaaaatt ttatatagat tttaataaac cgcaatcagg actgagtccg cccttttctt 60 ttgttactag aaaaagcaat caggcctgag cgccgccggt tacgatttgt tcgtttcaag 120 cagaaactta agattggaaa atttttgcat ttttctgcaa tattggaact cataaatagg 180 tttgtttgaa ggtaggtgct ggttttttca accggtcaga ctaccacaca ctcaggtgta 240 cttgaacaga tccatttgaa ggtaggtgct ggtttttcaa ccggtcagac tactaagtgt 300 tcgagctttt ggaaacttgt cgcattgctg tgcctctatt gagaatatca aaaattgcgc 360 aaaacaccct taattgttac gcgtggaaat gcattattaa attatatttt cacgaatgaa 420 caatatcaag ggacgttgtt attccattag cgacttgaca ccaggatata gaggagaaaa 480 cgcacgagat ttttcttaca gaccacagga gaagtacgtc aagtttttaa aagtttcccc 540 tttatctttt ctgttttttc ttatattttg tcatatagta acatattgtg agatattatt 600 taaggtttgt tttgaattta atagttgggc tggaaacaca cttcgcgact ggcttttgtc 660 aatagaacgg aaagcaaacg ttgaatacaa gcgattggaa gcaattagca gttggtcagc 720 tggtcgtcgg gttacaatac agcattcctt ttttaccaaa aagatggaaa ctgttatgga 780 aagaggcatt gctgccaaag ctcttgagct gcgaaatgat gctgccatga acaaagggaa 840 acgttttgtt ggccttaaag atcatatacc tgctggtaaa gatttgtacg tgtataaaca 900 gaggctgttt gagatgctca aaggtagtaa aagaagccgc gaggtggacg ttagtcgcat 960 taaaggatgt gaagtcgttg aaatgaagca catagatgtt ggtacgttat ctcccggtga 1020 aaatcaaata atcaacgtta agattgttag agatgacatg ctgccacagc ctgagcagag 1080 tgactatgcc atggtgacac attcaaatga atcaaaatat gccaacgcaa tgcatgtcgg 1140 ggctatagaa gttattttca atagctatgc atcacctacg agtgatatag ttggaggcat 1200 gattttggta gatacttgtc acaagagtgt cgccaacgct gtcaggagtg tttttgttac 1260 aggattggca ggaggaaagt tgatcagagt gctaatgtat ccgaatacac ttgttgaaat 1320 aggccccaag atgaacgata gatttaagct tgtgtgcaca acctcaaata gtgacattag 1380 cgagggattc aatctcgctt ctgtcaaagt caatgttgtt gggggcactc agagtttgat 1440 gacacaatat gttccccagc cattacttga aaatttgctc aataaggagc agggaactgt 1500 cgtggagtat ttgggtcagc tgtcatatgt tatgcaccat tcaaaccaca tcacagagga 1560 atttctagcg aaccagacta tggaatttga tcttggaaag aagctacatc ttacacccag 1620 tggttccgga gcaagtctta ctaaaagtgc atcaatgcgc tatgtggtag ggcctaaaca 1680 gaaactgctc aatgctgaaa gtgatgatgg agtctcgagt tttgataaac gcagagaaga 1740 agcacgcaag agtgttggaa tgcgaactga tgcatcgtac gtggatccag tttttgggat 1800 gacacagcgg gcttttggac aagcgagcac cactcaatca ttgttaaata agtttgctag 1860 tacgcgccaa atagaaggaa caccagtcga gactaagatt gcgagaacca aaatagtctt 1920 aaccaaggtc atggctggtg gcaacatctt atacactgaa cgcctaagtg atgctctttc 1980 caatgtggaa caacgagctg ctattgcttt tcaacgaacg catgtccaac acaagaaatt 2040 ggtagcactt gccactataa acgtaccaga gaatacgggt tgtgccttaa tgatgtgtta 2100 taatagtggc attcggggta aagcagttgt tgacgcttac acagcttcag ctgaagctag 2160 tatcatatgg aacccagcat gtcagcagca agcgcgttta gagataaatg tgaacccgtg 2220 caagagtgct tggagctatc agtacttgcg gcaatctaaa ggagtgttta acgtcgtatg 2280 catttcgggc tggaccacga caccatctac agatctttca ctcacgatag attggtatct 2340 tagtgacaag gacgcagaac cagaaacata ttgtgctgta ggaatcaatc ctaaaatcgt 2400 tcttaatcgg tggatgggta agctttcttt cccacaaggt acggatgtca cgctacgtag 2460 gatgccactt gcaataggtg gaggtgccgg aggaacagga ttggtataca tgaacatgcc 2520 gaatgctttg tgctcactgt ggaggtatat gcgaggaggg atgtcttttg agatcatcaa 2580 actgagttca ccttacatta aggctactat agcattcttc atagcattca cggatgtcga 2640 tgctacggtc ccaaatctag aagcgtaccc ccataagcta gttcagtttg cagcagtgca 2700 agacagggtc acaatatcct ttgataagga agattttgtg atggcatggt ctacacaagt 2760 gcacaacagt gtccctttgt ctgaggatgg ttgcccgtat ctctatgcgg tagttcatga 2820 tagtgttggt tcaacgatac ctggagattt caacattggt gtgtttctta aagaaatgaa 2880 tggggttgaa tctataggaa ggcaccctgg ttggaaagga gcgcgaccat tggctgtaag 2940 tccacaaggt ttgcggaaaa gttcctcagg tgtatggaat gagttgttta tggttagagg 3000 acccccagaa gccaagtcaa ctgatgttgt ccagtttgca atagatcttg ttggagttgg 3060 gatagcgaca aagaatccag gaacatggtc agtggagaca aacaatagtc ctatgaataa 3120 cctcatgcgc acagcaacat ggaagagtgg tacttttcat ttccaagtga taatggaagg 3180 gaatcctctt attaagagag gtgattggtc ttcatattgt gaagtctcct tgacacagag 3240 caccaaagtg actaccatgg ctagtagaaa ctgggttatg aaagatccta catcatggga 3300 attagaattc gacatcaaaa ttgaaggtcc caatgatggg tttgagaact gggaatcaca 3360 ttttagtaat cagacgagtt ggttccttgt tttctcagtt tttaatcccg atcagtcaac 3420 tgtgtttgtg gtaaatggaa tgatagacga tgattgctgg tttgctggaa acactttgat 3480 gccaccattt cttgaaccgg aaagtgttaa cagtaggcat tcatttctgt catctgtcca 3540 atttgattac ggaacaacat tcagcagaag gactccatcc ttgccaccag atggcgaaga 3600 tgaggaaagc agtaaatccg gaagaattcg aagtttagag cgatacagag agagggatga 3660 ccaaaatcgc ggaaatcttg caacgtatat gcgacgcact tgaacaatga tgtttggagg 3720 ttgtgtttag tatgtgatat ttgtgtttat ttgcttttat ttggtttgtt gcgtagtttt 3780 caatttaatg tatgtgaaat tagtaggttt agatctgctt tgtgcatttg acagtctgtg 3840 gaaatgcact ggttcatgag acaggaccac ctaggaggta ggactctggg ttttattgtc 3900 tcactagcta cttgcaatac attatataca taatttagta gtaattgttt tcttttgata 3960 tgtattatta cttttttatt a 3981 //