ID GQ222381; SV 1; linear; genomic RNA; STD; VRL; 6084 BP. XX AC GQ222381; XX DT 14-OCT-2009 (Rel. 102, Created) DT 31-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Turnip ringspot virus isolate B segment RNA1, complete sequence. XX KW . XX OS Turnip ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus; OC unclassified Comovirus. XX RN [1] RP 1-6084 RX DOI; 10.1007/s00705-009-0511-9. RX PUBMED; 19774335. RA Koloniuk I., Petrzik K.; RT "Complete genome sequence of turnip ringspot virus"; RL Arch. Virol. 154(11):1851-1853(2009). XX RN [2] RP 1-6084 RA Koloniuk I., Petrzik K.; RT ; RL Submitted (28-MAY-2009) to the INSDC. RL Department of Plant Virology, Biology Centre Academy of Sciences of the RL Czech Republic, Institute of Plant Molecular Biology, Branisovska 31, Ceske RL Budejovice 370 05, Czech Republic XX DR MD5; cb5e50e694a1e469570184c9dfbbd076. XX CC GenBank Accession Numbers GQ222381-GQ222382 represent the complete CC genome of Turnip ringspot virus isolate B. XX FH Key Location/Qualifiers FH FT source 1..6084 FT /organism="Turnip ringspot virus" FT /segment="RNA1" FT /host="cauliflower" FT /isolate="B" FT /mol_type="genomic RNA" FT /country="Croatia" FT /db_xref="taxon:392504" FT CDS 319..5901 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D0E0G9" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:D0E0G9" FT /protein_id="ACX53646.1" FT /translation="MACLTLHKEQSSYALIPHFMSSDVRWLLRCYTYVNTFLPEFPVTN FT RLARLRDRHFDLLCLGYGAYLTHRNAMASEPLEICQADFIFEDFHQFLCEKVSGNGGIS FT HFRTYINVCFGTYFGELIEFSALVLDESEDQDFDLQGLRDCISSVASYIPLQVSVAVEW FT TTDRIIDGIKKRFQAVVAEWCPMAMQACSWLANIWDKVKEWVEEAIKTMTWFLEGAREL FT FYYGVSILTASCAIGIVEKILVATGMIGANCGLVQAFLSSAVLTGGLLSFTKKGQFKDA FT TTMVSLVSVMAGVIASTVSALFGAPAIVAFQGPVELLEGAAAALSVFCDTTLLSMGKTC FT QAVNQINTCAGNLKAIVGKIFTMLQDFVWKIFGMESRFLRDASLMFEEDVDQWLKDIAE FT CEDTYLEKAYSSQDDIMKMQCLIKKGHDMRSKVLKVTSRISPVLANTVTRGVEAIEKLL FT RTSLCQGIRAARKIPFVVYAYGASRTGKTLVVDKLISDFQEHFGLGKNTVYSRNPIDQY FT WSGYRRQPIVNIDDFGAVACEPSMEAQMIPLVSSSPMPLTMAAVEEKGLMFDSKFIFCS FT SNLLEASPESKVHDNQAFRNRRHVLIHVTLDEEKEYNMHDFTANQRYKILKYDKGTYVV FT QNEFTSYGDLLSFCLTKWEEHEAEQVANLTKKLDEPALMGDFRSFEVMFSGMILKSVEG FT KIMEHSDEKTGKSFYDFVCFRRKDKLWHFTVDSSGKANMWSEKVTSEELSAKELESQEI FT LRRCYEMLRFNEDTNLIIRMHLKDLAREDFYDEKMRFIGKFGNEHIQAQMQPTLDNMLD FT WHKIVLCGMGALQDRRSPVKWYEGLVDKIKDAMYTVYSKEISEWPLGLKIVVGVLISSL FT MGSGLWSLMNVLQGAGNTAALGVAAATGFSRYSKEDIAVAQSRKPNRYDVAQYKYRNVP FT ITKRAWAQGVMPLEHATAMIFNKIKASMQYGRTEVQIAIVPGRRFIGYTHFFQKITTPI FT RVMINTASGSRHLYYKPENMKYFEDSELCVYEDITLEDLPGTSWDLFCWDFEKVQQTSF FT KALFLSCKRKAATGLPNPEWADIDVRTKTESLMINEGDYARVLPRFLEYTAPTVNYDCG FT SLVVAEIEGTYKVVGIHVAGSGGTKGYACFLPPLVRKAQAQHAQQYFDFLAFEEREGDG FT IARIATLKKGIHIPVPTKTSLVETPVEWHLDTPCDKYPSILSSSDPRLEVSGMTDYDPF FT KAGILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLEEAINGIKGLEYME FT RIPMATSEGFPHILTRSHGEKGKIRFVEGDGEDLTLLPNTSVTEALNIMEEHLEHEVPT FT LIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMRRRDILPCQV FT GINPYGMEWTDLAARLKSKGNNILCCDYSSFDGLLSKQVMAAMASMINSFCGGDSSIKK FT KRENLLMACCSRYAICKSTVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMREQKV FT PDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLKEFLAKHKVVITDGKDKTSPY FT LLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHYINVTNLEQHEAYKTNLVNV FT LRELYMWDINECAALRKKALQRVSWLLPSDLPTVAQIEKWYASCRGRYVPDSADSINFL FT LDQEHLGPLLAPQGVQRGVRITDQVRTVNLAHENHTTRKPGELWILCQTLYPHGNLPDG FT VKAINWPLGSGRGGLPTTSWVEENIKRPTSELRKMISAALKRGDQIVFATRDNILPCNM FT LAVLFLVIEGSITVEMSNMVLSAVIQQCKTLGYLVKECDFAFFST" XX SQ Sequence 6084 BP; 1780 A; 1085 C; 1442 G; 1777 T; 0 other; tattaaaatt ttaataagat tttgataaac cgcaatcagg actgagctcc gcccgttact 60 gaaagttgca aagtgttttt gaatattatt cattcagaaa tttttacttt gtcctctttt 120 atgattttaa ctcgtggata cgtttgttga agataggtgc tggtttttca accggtcaga 180 ctatcattgg ttactgtttc ccttgtgaaa atattttact tttgctgtgc ctttgatttt 240 gaattgaaga atatcagaaa ttagtgtgaa tttctttgct attgtgtgag tactacaagc 300 tttgctttat taaataatat ggcttgttta actttgcaca aggagcaaag cagttatgct 360 ttgatacctc attttatgag tagtgatgtt aggtggttat tacgttgtta tacgtatgtc 420 aacacttttc ttcctgaatt tccagttaca aacagattag cacgtttgcg ggataggcat 480 tttgacctac tttgtttagg ttatggtgca tatttaacac atcgcaatgc tatggcaagt 540 gagcctttgg aaatatgcca agcagacttc atatttgaag acttccatca gtttttgtgt 600 gaaaaagttt ctggaaatgg aggaatttcc cattttcgga catacataaa tgtctgcttt 660 ggcacgtatt tcggagaatt gattgaattc agtgcacttg tgctagatga aagcgaagat 720 caggattttg atttgcaagg actacgcgac tgcatcagta gcgtggcctc ttatatccca 780 cttcaagttt cagttgctgt ggaatggacc actgatagaa ttatcgatgg aattaagaaa 840 agatttcaag ctgtcgttgc agagtggtgt ccaatggcaa tgcaggcatg ttcatggctc 900 gccaatatat gggataaggt caaggaatgg gttgaagaag ccatcaagac gatgacctgg 960 tttcttgaag gagcgagaga gttgttctat tatggtgttt ccattttaac tgcaagctgt 1020 gctataggca tagtggaaaa gatattggtg gcaacaggca tgataggagc caactgtggg 1080 ttggtgcagg catttttgtc gagcgcagta ctcactggag gacttttgtc gttcaccaag 1140 aaaggacaat tcaaagatgc tacaacgatg gtctcattgg tgtcagtcat ggcaggagtt 1200 attgcttcta cagtgtctgc tctttttggg gctccggcga ttgtggcctt tcagggtcct 1260 gttgaactat tggaaggagc tgctgctgca ttgagtgtct tctgtgacac tacactcctt 1320 tctatgggaa aaacatgtca agcagttaac caaatcaata cgtgtgctgg caacttgaaa 1380 gctatcgtcg ggaaaatctt cacaatgctt caggattttg tttggaagat ttttggaatg 1440 gaatcccgct tcttgagaga tgcttctctg atgtttgagg aagatgttga ccagtggctt 1500 aaggacattg cagagtgtga agatacatat cttgagaaag catattcgtc acaagatgac 1560 atcatgaaga tgcaatgcct tatcaagaaa ggtcatgaca tgcgttctaa ggtgcttaaa 1620 gtcacgagca ggatttcccc tgtgcttgca aacacagtaa cacgaggtgt agaagccatt 1680 gagaaattgt tgagaacaag tttatgccag ggaatacgag ctgcacgcaa gattcctttt 1740 gttgtttacg cctatggagc ttcaagaacc ggcaaaacat tggtggttga caagctaata 1800 tcagatttcc aggagcactt tggtttagga aagaatactg tttacagtag aaaccctata 1860 gaccaatact ggagtggcta tcgtagacaa cccattgtta atattgatga ttttggtgca 1920 gttgcatgcg agccttctat ggaagcccag atgataccac ttgtgtctag ttcacccatg 1980 cctctgacaa tggcagcagt cgaagaaaaa ggattaatgt ttgactcaaa attcattttc 2040 tgttcatcaa acttgttgga agcaagccca gaaagtaagg ttcatgataa tcaagctttc 2100 agaaacagaa gacatgtttt gatacatgtc actttggatg aagagaaaga gtacaacatg 2160 catgatttta ctgcaaacca gagatacaaa attctcaagt atgacaaagg aacatatgtt 2220 gtgcaaaatg agttcacctc ctacggagat ttgttatcct tttgtcttac gaaatgggaa 2280 gagcacgaag cggagcaagt ggcaaatttg accaaaaagt tggatgagcc tgctcttatg 2340 ggtgattttc ggagttttga agtcatgttt tcgggcatga tcttgaaaag tgttgaaggt 2400 aaaatcatgg agcacagtga tgagaaaacc gggaaaagtt tttacgattt tgtgtgcttc 2460 agacgcaaag acaagttgtg gcattttaca gtggactcaa gtggcaaagc aaacatgtgg 2520 tcagagaagg tcaccagtga ggaattgtcc gcaaaagaac ttgagtcaca ggaaattttg 2580 cgtcgctgtt acgagatgct gcgctttaat gaagacacca acttgataat taggatgcat 2640 ctgaaggatc ttgcacgaga agatttttat gatgaaaaga tgcgttttat aggcaagttt 2700 ggaaatgagc acattcaggc acagatgcag cccacgctag acaacatgtt ggattggcac 2760 aaaattgtgc tgtgtggtat gggagcctta caagatagga gatctcccgt gaaatggtac 2820 gaaggccttg tggataagat taaggacgcc atgtacaccg tctacagcaa agaaatttct 2880 gaatggcctt tgggtctcaa gattgttgtg ggagtgttga tttcttcact tatgggttct 2940 ggactttgga gtttgatgaa tgtgttacaa ggagcaggaa acactgcagc cctcggcgtt 3000 gccgcggcca caggattcag ccgatacagc aaagaagata ttgcagtagc tcagagtcgc 3060 aagccaaaca ggtatgacgt tgctcaatac aaatacagaa atgttccaat taccaaacgt 3120 gcttgggcac agggagttat gcctcttgag catgccaccg caatgatatt taacaagatc 3180 aaggcgagta tgcaatatgg gcgcacggaa gtacaaatcg caatagtgcc aggaaggcga 3240 ttcatcggct acactcattt ctttcagaag atcaccacgc caatacgtgt tatgataaac 3300 acggcatcgg gttccagaca tctctattac aaaccagaga acatgaagta cttcgaggat 3360 agtgaattgt gcgtctacga agatatcacg ctggaggatt tgccaggcac aagctgggat 3420 ttgttttgtt gggattttga aaaagtgcag caaacatctt ttaaggcact gttcctatct 3480 tgcaagagaa aagcagccac aggcttgccc aatcctgagt gggctgacat tgatgtcagg 3540 acaaaaacag aatctctcat gataaatgaa ggtgattatg cacgagttct gcccagattt 3600 ttggaataca cggctcccac tgtgaattac gattgtggat ctttggtagt ggctgaaatt 3660 gaaggaactt acaaagttgt tggcattcat gttgccggct caggagggac taaaggttat 3720 gcttgtttcc taccaccact tgttagaaaa gcgcaagctc agcatgctca acagtatttt 3780 gatttccttg cctttgaaga gagagagggt gatggtatag ccaggatagc aactctgaag 3840 aaaggcattc atattccagt tccaaccaag acatcacttg ttgaaacccc agttgaatgg 3900 catttggata caccatgtga caaatatccc agcatattgt caagttcaga tcctcgtctc 3960 gaggtttctg gcatgacaga ctatgatcct ttcaaagcag gaattctcaa gtaccaaaac 4020 ccaatgggag aattggacca agacctactt caagaggttt gtgacgaaat agaggaaaca 4080 tggagagatt gtcaggagga gtttgagaca tttgaagaag tgagcctgga agaagcgatc 4140 aacggcatca agggattgga atatatggaa agaattccaa tggcaacatc tgaaggattt 4200 ccacacattc tgacaagatc acatggagag aaagggaaaa tcaggtttgt tgaaggtgat 4260 ggtgaagatc tgaccctact tccaaacacg agtgttacag aagccttgaa catcatggaa 4320 gaacatctag agcatgaagt tccaactttg attggaatag aatgtcccaa agatgaaaaa 4380 ctgcctcata gaaagatctt cgagaaacca aagacacgct gcttttcaat acttccaatg 4440 gaatacaatc ttttggtgcg gcgcaggttt ttaaaatttg tcagatttat catgaggaga 4500 agagatattt tgccctgcca agttggtata aatccatatg ggatggaatg gactgatctg 4560 gctgcacgcc tcaagagtaa aggtaacaac attctttgct gtgattatag cagtttcgat 4620 ggcttgctgt ccaagcaggt tatggcagct atggctagca tgataaactc cttctgtgga 4680 ggggacagca gcattaaaaa gaagcgtgaa aatttgctga tggcttgttg ttctcgttac 4740 gccatttgca aatccactgt ttggcgcgtt gagtgtggca taccgtctgg atttcccctc 4800 actgtaatat gcaattctat ttttaatgag attctcatac gttacagctt caaagccatc 4860 atgcgtgaac agaaagttcc agatctcata ccaataagct ttgacaagta tgttggaatg 4920 gttacatatg gagatgataa tctactttcc gttagtgagg ttgttaaacc tttctttgat 4980 gggaagaggt tgaaagagtt cttggccaaa cacaaggttg tgatcacaga tggaaaagat 5040 aagaccagtc cttaccttct ctttcgtcgc ttggaagatt gtgattttct gaaacgaggt 5100 tttaagaaag acaggagtgg gtttttctgg aactcacctg aagagaagga gagtttgtgg 5160 gctcaactac actacatcaa tgtaaccaat cttgaacaac acgaggctta caaaacgaat 5220 ttggtgaatg tgttgcgtga gttgtatatg tgggacataa atgagtgtgc tgctttaagg 5280 aaaaaagctc tacaacgtgt ttcttggctt ttaccatcgg accttcctac agtagctcag 5340 atagagaaat ggtatgcttc atgtcgcgga cgttatgtgc cagattctgc tgactcaatt 5400 aacttcctct tagaccaaga acatttgggg cctttattgg caccacaagg tgtacaaaga 5460 ggagttcgca tcactgatca ggtacgtact gtgaatcttg cacatgagaa tcacaccacg 5520 agaaaaccag gagaactatg gatcttgtgt caaacattgt atcctcacgg taatcttcct 5580 gatggtgtta aagcgattaa ctggcctctt ggtagcggta gaggaggatt gcctacaaca 5640 tcctgggttg aggaaaatat taagcgtcct acttcagagc tcagaaagat gataagtgca 5700 gccttaaaaa gaggagatca gattgttttt gcaacacgtg ataacatttt accgtgcaat 5760 atgctggctg tcctcttctt ggttattgaa ggcagtataa cggtcgaaat gagcaacatg 5820 gtcctttcag cagtcattca gcagtgtaaa actttaggct atttagttaa agagtgtgat 5880 tttgctttct tttcaacata atctttagtt ttaaatctgc tttgtgtgtt tgacagtctg 5940 tggaaacaca ctggttcatg agacaggacc acctaggagg taggactctg ggtttagttg 6000 tctcttttgt tgtatgacta ctttatgata gataatttcg taataattaa attcttagtt 6060 gatatatatt gttacttttt tata 6084 //