Dbfetch
ID GQ221829; SV 1; linear; genomic RNA; STD; VRL; 3682 BP. XX AC GQ221829; XX DT 19-MAY-2010 (Rel. 104, Created) DT 10-JUN-2010 (Rel. 105, Last updated, Version 2) XX DE Tobacco necrosis virus A isolate Velence, complete genome. XX KW . XX OS Tobacco necrosis virus A OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphanecrovirus. XX RN [1] RP 1-3682 RX DOI; 10.1007/s00705-010-0660-x. RX PUBMED; 20364277. RA Krizbai L., Nemeth M., Law V., Reed C., Varga A., Hangyal R., James D.; RT "Molecular characterization of a Hungarian isolate of Tobacco necrosis RT virus A"; RL Arch. Virol. 155(6):999-1001(2010). XX RN [2] RP 1-3682 RA Krizbai L., Nemeth M., Law V., Reed C., Varga A., Hangyal R., James D.; RT ; RL Submitted (28-MAY-2009) to the INSDC. RL Tree Fruit Research, Sidney Lab, Centre for Plant Health, Canadian Food RL Inspection Agency, 8801 East Saanich Road, Sidney, BC V8L 1H3, Canada XX DR MD5; da9af0534f0e0fba2c5ae058190cfa50. XX FH Key Location/Qualifiers FH FT source 1..3682 FT /organism="Tobacco necrosis virus A" FT /host="Chenopodium quinoa" FT /strain="A" FT /isolate="Velence" FT /mol_type="genomic RNA" FT /country="Hungary" FT /isolation_source="greenhouse conditions" FT /db_xref="taxon:12055" FT 5'UTR 1..59 FT CDS 60..2234 FT /codon_start=1 FT /transl_except=(pos:666..668,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="RdRP" FT /db_xref="GOA:D6MLS2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D6MLS2" FT /protein_id="ADE10194.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQTDLALI FT EDTEHLDDINECFEESAGAQSQRTKVVAEGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL FT MNTHATRAAVRGMEHTQGEGWWNNRLGIGGQVGLAFRSKXGCLERRPGFSTSVSRGEHP FT DLVVIPSGRPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFFVEGPSGLQDAP FT KPVKGAFRTLDKFRDLYTKNSWRHTPVTSEQFLMNYSGRKLTIYREAVDSLSHQPLSSR FT DAKLKTFVKAEKLNLSKKPDPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEI FT TVFKGFTLEQQGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALKYEHEFYLRDYPNDK FT QLKWLLKQQLCNVGTAFASDGIIKYKKEGCRMSGDMNTSLGNCILMCAMVYGLKEHLGI FT QLSLANNGDDCVIVCEKADLIKLTSSIEPYFKQFGFKMEVEKPVDIFERIEFCQTQPVF FT DGNQYIMVRKPSVVTSKDVTSLIPCQNQAQYAEWLQAVGECGLSINGGIPVMQNFYQML FT QTGVSRTRFTKTGEFQTNGLGYHSRFMNRVARSPSPETRLSFYLAFGITPDLQEALEIF FT YDTTKLELDDVIPTDTCRVSGEHLINGLSN" FT CDS 60..668 FT /codon_start=1 FT /product="truncated RNA-dependent RNA polymerase" FT /note="truncated RdRp" FT /db_xref="GOA:D6MLS3" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D6MLS3" FT /protein_id="ADE10193.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQTDLALI FT EDTEHLDDINECFEESAGAQSQRTKVVAEGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL FT MNTHATRAAVRGMEHTQGEGWWNNRLGIGGQVGLAFRSK" FT CDS 2218..2436 FT /codon_start=1 FT /product="p23" FT /db_xref="GOA:D6MLS4" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:D6MLS4" FT /protein_id="ADE10195.1" FT /translation="MDYQTDVSEDNVQVRGRARSSEGKKHNGSGLTGVKRHAVSETAQK FT SQQGTGNGTMTNIAEEQTITVTYNFNF" FT CDS 2439..2609 FT /codon_start=1 FT /product="p6" FT /db_xref="GOA:D6MLS5" FT /db_xref="UniProtKB/TrEMBL:D6MLS5" FT /protein_id="ADE10196.1" FT /translation="MAYCRCCDTSPGITLFPYFAILILILSILVVGTPNQQYHHSPSTY FT EYKTQHISIAK" FT CDS 2612..3442 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D6MLS6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D6MLS6" FT /protein_id="ADE10197.1" FT /translation="MAGKKNNNNGQYIVLRTPEQQVEIDQRDARRLARGRMKKMRQPVQ FT RYINGHGLQNGLSGRGGYVVAPTSGGVVTRPIVPRFSNRGDSTIVRNTEILNNQILAAA FT GAFNTTNSALIAAAPSWLAGISDLYSKYRWLSCELIYIPKCPTTTSGSVVMAFTYDRNN FT AAPTTRAQLSQSNKAINFPPYAGYDGAAYLNSSRGAGTAIAIQLDITKLDKPWYPTISS FT GAFAALGVLDQNQFCPASLVVASDGGPVAATPAGDVFIKYVIEFIEPINPTMNV" FT 3'UTR 3645..3682 XX SQ Sequence 3682 BP; 1002 A; 848 C; 927 G; 905 T; 0 other; agtattcata ccaagaatac cgaataggtg caaagcctta ctcagccaaa gagtttaaaa 60 tggagttacc taaccaacac aagcaaacag ccgccgaggg tttcgtttct ttcctaaact 120 ggctatgcaa cccatggcgc cgacaacgta cagtcaacgc tgctgttgcg tttcaaaccg 180 atttagccct cattgaggac acagagcatc tcgatgacat taacgagtgc tttgaagaat 240 cggccggagc tcaatcacag cgcactaagg ttgtggcaga aggtgcatat gcccccgcta 300 aatccaacag aacccgccgg gtccgcaagc agaagaagca caagtttgtc aaatatcttg 360 tgaatgaggc ccgagccgag tttgggttgc ctaaaccaac tgaggcaaac agactcatgg 420 ttcaacactt cctgctcagg gtgtgtaagg actggggtgt tgttactgct cacgtacacg 480 gtaatgttgc acttgcattg cctctggtgt tcattccaac ggaagacgat ctgctgtcaa 540 gagcattgat gaacacgcat gctacaagag ccgctgtacg aggcatggaa cacactcagg 600 gagaagggtg gtggaacaat aggttgggga ttgggggcca ggtaggactg gccttccggt 660 ccaaataggg gtgccttgaa aggaggccag gattctccac gtccgtttcg cgtggggagc 720 atcctgatct ggtggtcata ccatcagggc gccctgagaa acagcgtcag ttgttacgct 780 atagtggtat aggcggccat ttattaatcg gcatccacaa caactctctc tccaacttac 840 gtaggggtct gatggagaga gtatttttcg tcgagggacc ttctggtctt caagacgccc 900 ctaagcccgt caagggtgca ttccgaaccc ttgataaatt tcgtgatctc tataccaaaa 960 atagttggcg tcatacccct gtaactagtg agcaattcct aatgaattac tcgggcagga 1020 agctgactat ttaccgagaa gcagttgata gtttgtcgca tcagccgctc agctccaggg 1080 atgcgaaatt gaaaacattc gttaaggccg aaaaacttaa cctttctaag aagcctgatc 1140 ctgctcctag ggtcatccaa cctagatcgc ctcggtacaa cgtttgtttg ggcaggtacc 1200 tccgacatta tgaacatcat gcgttcaaaa ccattgctaa atgctttggg gaaatcacgg 1260 tctttaaagg gtttactctc gagcaacaag gcgaaatcat gcggtctaag tggaacaaat 1320 atgttaatcc cgttgcggtc ggactcgatg ccagtcggtt tgaccaacac gtgtcagttg 1380 aagcacttaa gtacgagcat gaattttatc tgagagacta cccgaatgat aaacagctaa 1440 aatggttgtt aaaacaacaa ctgtgcaatg tcggtacggc atttgctagt gatggcatca 1500 taaagtacaa gaaggaaggt tgcagaatga gtggggacat gaacactagt ttgggcaatt 1560 gcatactcat gtgcgcaatg gtctacggtt tgaaggaaca cctgggcatc caattgtcgt 1620 tggcaaacaa cggggatgac tgcgtcattg tctgtgagaa agcggattta attaaattga 1680 cgagcagcat cgagccgtat ttcaagcaat ttggattcaa aatggaggtg gaaaaacccg 1740 tggacatatt tgaaagaatt gagttttgcc aaacccaacc agtgtttgat ggcaaccagt 1800 acataatggt aagaaagcct tccgtagtaa cttccaaaga tgtcactagt cttattccgt 1860 gtcagaatca agcacaatat gcagaatggc tgcaagctgt aggtgagtgt ggcttgagca 1920 ttaatggagg gattccggtc atgcagaatt tctatcaaat gctccaaact ggcgttagcc 1980 gcacaagatt taccaagacc ggcgagttcc agacgaatgg cttggggtac cactctagat 2040 ttatgaatag agtggcccgg agtccttcgc ctgagacccg tttgtccttt tacttagctt 2100 ttggtatcac accagacctc caggaagcat tggagatctt ctatgatacc acgaagctgg 2160 aattggacga tgttatccca actgatacct gccgagtatc aggagagcat ttaatcaatg 2220 gattatcaaa ctgatgtcag tgaggacaac gtgcaagtac gcggtcgggc taggagtagt 2280 gagggtaaga agcacaatgg ttcgggatta actggcgtta agcgtcacgc ggtgagtgaa 2340 acagctcaga aatcacagca aggtactggc aacggaacaa tgaccaacat agccgaagag 2400 cagaccatta ccgtgacata caactttaac ttttagttat ggcgtattgt cgctgttgtg 2460 atacttcacc aggtattaca ttattccctt actttgcaat tctcatcctc atattatcaa 2520 tactggttgt tggaactcca aaccagcaat atcatcattc tcctagtact tacgagtata 2580 agactcaaca tatttcgatc gcaaaataga catggcagga aagaagaaca acaacaacgg 2640 tcagtacatc gtactgcgta ctcctgagca acaggtggaa attgatcagc gtgatgctcg 2700 cagactggca cggggccgca tgaagaaaat gaggcagccg gttcaacgat acatcaatgg 2760 gcatgggcta cagaatggat tgtcagggcg tggtggttat gtcgttgcac ccacatctgg 2820 tggtgtggtg actcgaccca tcgtgcctag gttttcgaac cgaggcgact cgactattgt 2880 acgcaatacc gagatcctga acaatcaaat attagcagca gctggcgcgt tcaacactac 2940 taattccgca ctgattgcag cggcaccgtc atggttggct ggcatttcag atttgtacag 3000 caaatacaga tggctatctt gtgagctcat ctacatacct aaatgtccaa ccacaacaag 3060 tggatctgtt gtaatggctt tcacatatga tcgcaataac gctgccccca caactagggc 3120 gcagttgtca cagtccaata aagccatcaa ctttccaccc tatgcagggt atgacggagc 3180 ggcgtacttg aactcttcga gaggtgctgg gactgccatt gccatccaat tggacatcac 3240 caaattggac aagccttggt accctaccat ctcgtcaggt gcgtttgccg ccctgggggt 3300 gttggatcag aaccagttct gcccagcttc cctggtggtc gctagtgatg gaggtcccgt 3360 ggcagctacg cctgctgggg atgttttcat caagtacgtg attgagttca ttgaaccaat 3420 caaccctaca atgaacgtct agttcttgta ctgtaactcg gctaatgcct acggtagagt 3480 cacacgtgtg gagatggatg ctggatcctg gaaaacaggt ttaacgggta gggggtggtg 3540 cccctaccga cgcatcactc cagataccac acgtactcgg ctatggcagg gtctgtcgag 3600 gtttgtgcgc catgatccac tggaaacggt ggtgaggggg gtagcacatt tcatccagat 3660 tgaggggctt ttgccccacc cc 3682 //