ID GQ221224; SV 1; linear; genomic RNA; STD; VRL; 5682 BP. XX AC GQ221224; XX DT 02-JAN-2012 (Rel. 111, Created) DT 08-JAN-2012 (Rel. 111, Last updated, Version 2) XX DE Cucurbit aphid-borne yellows virus isolate CABYV-JAN, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5682 RA Shang Q., Xiang H., Han C., Li D., Yu J.; RT "Complete sequence anlyzing of a Japanese isolate of Cucurbit aphid-borne RT yellows virus"; RL Unpublished. XX RN [2] RP 1-5682 RA Han C.; RT ; RL Submitted (28-MAY-2009) to the INSDC. RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West RL Road, Haidian District, Beijing 100193, China XX DR MD5; 6307f42aba53018643194d4feb9144ce. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4337425; 24372390. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5712577; 29238357. XX FH Key Location/Qualifiers FH FT source 1..5682 FT /organism="Cucurbit aphid-borne yellows virus" FT /host="cucumber" FT /isolate="CABYV-JAN" FT /mol_type="genomic RNA" FT /country="Japan:Okayama" FT /db_xref="taxon:91753" FT 5'UTR 1..20 FT CDS 21..740 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:G8Z1X0" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:G8Z1X0" FT /protein_id="ADE48858.1" FT /translation="MQIESVQQQLIFRPTRRASIEDRRLNTAYFLINHVFFLAQNGSKI FT LFRLFLARLPLLISEQLSGDYVYTPGASKRIILARFHRHCGAPLPSSSAVDLRLPTTKD FT VARFFLARHYSRIMGERLQRNQTSLFGGYAEFAKFINVWCSSISRRLRESAPRDFSSSY FT IFVELSNLGLSLRNLVSASGVHNRDALARVALHVHRIYGEDGGLDFWRLANLPSKSWPF FT NDARHFEGSVVQKILQR" FT CDS join(142..1488,1488..3311) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /db_xref="GOA:G8Z1X1" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:G8Z1X1" FT /protein_id="ADE48860.1" FT /translation="MEAKYFSAFFLLAFLCSLASSYQGTMFIPLEPVNASYWLDSTAIA FT VPPSPHQVQLIYDCPPQKMLRDFSSRDITRELWGRGYNETRLAFSEAMQNLQNLLMSGV FT RQSRAGLESLLHVTFRAVTYLWSSLIWASACAIWYLLREYTIEMLSLASLYMSTVYMVK FT MAAWIFGDLPIFLLKAGLSMMRGISKALWFKRSYNAEKSVEGFLSFKIPQSPPKHSVLQ FT VQYKDGSHAGYATCVTLYNGTNGLLTAHHVAVPGSKIVSTRNGNKIPLSEFRSIMESEK FT RDLVLLAGPPNWEGTLACKAVHFQDAQSLCKSKATFYAYNGEEWTSSNADIVGIAQGKT FT HASVLSNTDAGHSGTPYFNGKTVLGVHVGGAKEENANYMAPIPGIYGLTSPSYEFETTA FT PQGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSQRHQADYEYESGKRAGGRDRR FT NNRTKCHPRGWAQKWRRTVSCCSLFPEGQHVHTSEQTGKPHCFCSIPHHQCFYRHFVGN FT QTSHNGQNRCPFNREAGGSSPGGSSHEETQVAQTRQEKFEKLTADFSCFFDTQYIWEQG FT GEEAPGFDKVGSLPQFYHAKQKKSSNWGDKICKQHPEMGDLTKGFGWPQFGAKAELKSL FT RLQAARWLERAQSVKIPSPEEREHVIERCCRAYQAAKTNGPMATRGDRLSWDNFLQDFK FT QAVLSLEMDAGIGVPYIAYGKPTHRGWVEDKQLLPILARLTFNRLQKMLEVRHDDLSPA FT ELVREGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALW FT RVVPSKPGFGLSTDEQVVEFMQILSAQVGLTPSELITEWRAHMIATDCSGFDWSVSDWL FT LEDDMEVRNRLTLDLNETTRRLRAAWLFCISNSVLCLSDGTLLAQRVPGVQKSGSYNTS FT SSNSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKSLGFKVEESSKLEFCSHIFEK FT EDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFSILNELRSDPSLVETLHQWLV FT LPVQPQKI" FT CDS 142..2037 FT /codon_start=1 FT /product="P1" FT /db_xref="GOA:G8Z1X2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:G8Z1X2" FT /protein_id="ADE48859.1" FT /translation="MEAKYFSAFFLLAFLCSLASSYQGTMFIPLEPVNASYWLDSTAIA FT VPPSPHQVQLIYDCPPQKMLRDFSSRDITRELWGRGYNETRLAFSEAMQNLQNLLMSGV FT RQSRAGLESLLHVTFRAVTYLWSSLIWASACAIWYLLREYTIEMLSLASLYMSTVYMVK FT MAAWIFGDLPIFLLKAGLSMMRGISKALWFKRSYNAEKSVEGFLSFKIPQSPPKHSVLQ FT VQYKDGSHAGYATCVTLYNGTNGLLTAHHVAVPGSKIVSTRNGNKIPLSEFRSIMESEK FT RDLVLLAGPPNWEGTLACKAVHFQDAQSLCKSKATFYAYNGEEWTSSNADIVGIAQGKT FT HASVLSNTDAGHSGTPYFNGKTVLGVHVGGAKEENANYMAPIPGIYGLTSPSYEFETTA FT PQGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSQRHQADYEYESGNGQAAATAE FT TTAPNAIPAVGRKSGDAQSPVAPSSPKANTYTPPNKRENRTASAVSPTTNASTDTLSEI FT KQAIMDKIDVHSIEKQVVQALADQAMKKPKSRKRGKRSSKSSQQTSPVSSTPNTSGNRA FT GKKPQDSTRSDPSPSFTTLNKRKARIGETKSANSTQKWVISQKASGGPSSARKLN" FT CDS 3511..5517 FT /codon_start=1 FT /transl_except=(pos:4108..4110,aa:OTHER) FT /product="read-through protein P5" FT /db_xref="GOA:G8Z1X3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:G8Z1X3" FT /protein_id="ADE48863.1" FT /translation="MNTAAARNQNAGRRRRRNQRSIRRDRVVVVNPSGGPPRGRRQRRN FT RRRLNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAARQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPKXVDGSSPPPPSPSPTPPPPPPPQ FT PQPQPCAQRFWGYEGNPQNKILTAENSRNIDSRPLNFVQMYKWEDEKWDKVNLQAGYSR FT NDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIGN FT YKGCKIKNYQSNTTFVAGHPDATMNSKSFDSARAVEVDWYASFELECDDEEGSWAIYPP FT PIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNNGSAPRRIPRKGAMAWSTPEPSFS FT GDESQRQDSKTPSPEERGSDTLESETKKEEANLQVAFEEENIPDVEDEDIWKGISRGSE FT TETTEDDRASTSSRLRGNLKPQGLPKPQPTRTITQFNPNPDLVEAWRPDLAPGYSKADV FT AAATVIAGGSIHEGRDMLRRREESVMDSRKKWGVLSSASTLTSGSLKKLSAQSEKLAKL FT TTGERREYERIKNSQGKTVAAEYLELVLADKTS" FT CDS 3511..4110 FT /codon_start=1 FT /product="coat protein" FT /note="CP; P3" FT /db_xref="GOA:G8Z1X4" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:G8Z1X4" FT /protein_id="ADE48861.1" FT /translation="MNTAAARNQNAGRRRRRNQRSIRRDRVVVVNPSGGPPRGRRQRRN FT RRRLNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAARQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT CDS 3539..4114 FT /codon_start=1 FT /product="movement protein" FT /note="MP; P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:G8Z1X5" FT /protein_id="ADE48862.1" FT /translation="MQGGGGEEISALYGATAWLWSTPLGDHHAEDDNEETADALIEEAE FT LEEGAQAKHSYFQRTISRAVPQEVSPSGRLYQRAQHSALEYSRPTMNIRSSWSSWSSSP FT RPLPPPRAPSLMSWTPTASLAPSNPRLINLESPRMDYDVGQLGRSTGWNGMTQLRTNSR FT SSTKGTDLPRLQAASGSPSSARSKTRNR" FT 3'UTR 5518..5682 XX SQ Sequence 5682 BP; 1583 A; 1452 C; 1397 G; 1250 T; 0 other; acaaaagata cgagcgggtg atgcaaattg agtctgtcca gcaacaacta atattcagac 60 caacccgacg tgcgagcata gaagatcgaa ggttaaacac agcatacttt ctgatcaacc 120 acgttttctt tttggcgcaa aatggaagca aaatactttt ccgccttttt cttgctcgcc 180 ttcctctgct cattagcgag cagttatcag gggactatgt ttatacccct ggagccagta 240 aacgcatcat actggctcga ttccaccgcc attgcggtgc ccccctcccc tcatcaagtg 300 cagttgattt acgactgccc accacaaaag atgttgcgcg atttttcctc gcgcgacatt 360 actcgagaat tatgggggag aggttacaac gaaaccagac tagccttttc ggaggctatg 420 cagaatttgc aaaatttatt aatgtctggt gttcgtcaat ctcgcgcagg cttagagagt 480 ctgctccacg tgacttttcg agcagttaca tatttgtgga gctctctaat ctgggcctca 540 gcctgcgcaa tttggtatct gcttcgggag tacacaatcg agatgctctc gctcgcgtcg 600 ctttacatgt ccaccgtata tatggtgaag atggcggctt ggatttttgg cgacttgcca 660 atcttccttc taaaagctgg cctttcaatg atgcgaggca tttcgaaggc tctgtggttc 720 aaaagatcct acaacgctga gaagtctgtc gaaggatttc tctcattcaa gataccacaa 780 agccctccca aacactcggt attacaggtc caatacaaag atggatctca tgccgggtac 840 gccacctgcg tgacgcttta caatggaacg aacgggcttc tgactgccca tcacgtggct 900 gtcccaggta gcaaaattgt ctccaccagg aatggaaaca agatcccact ctctgaattt 960 agatcaatca tggaatctga aaagagggat cttgtgcttt tggctggacc ccccaactgg 1020 gaaggtactc tagcttgtaa agcagtccat ttccaagatg cccaaagtct ttgtaaatca 1080 aaagcaactt tctacgctta caacggagaa gagtggactt catccaatgc tgacatagtc 1140 ggcattgcgc agggcaaaac ccacgcctca gtgttaagca acacagacgc gggtcatagt 1200 ggcaccccgt attttaatgg caaaactgtc ttgggtgtcc acgttggtgg ggcaaaagaa 1260 gaaaatgcca attacatggc cccgatacct ggaatttatg gtctcaccag cccaagttat 1320 gaatttgaga ccacggcacc ccaaggacgc ctgttcacac aggaagaaat agaagaactc 1380 attgaggaat tctccttcag tgagataaca tccatcatgg ggcatcgccg attccaccaa 1440 atgcacgact cgcagcggca tcaagctgat tatgagtacg agtcgggaaa cgggcaggcg 1500 gccgcgaccg ccgaaacaac cgcaccaaat gccatccccg cggttgggcg caaaagtgga 1560 gacgcacagt ctcctgttgc tccctcttcc ccgaaggcca acacgtacac acctccgaac 1620 aaacgggaaa accgcactgc ttctgcagta tcccccacca ccaatgcttc taccgacact 1680 ttgtcggaaa tcaaacaagc cataatggac aaaatcgatg tccattcaat cgagaagcag 1740 gtggttcaag ccctggcgga tcaagccatg aagaaaccca agtcgcgcaa acgcggcaag 1800 agaagttcga aaagctcaca gcagacttct cctgtttctt cgacacccaa tacatctggg 1860 aacagggcgg ggaagaagcc ccaggattcg acaaggtcgg atccctcccc cagttttacc 1920 acgctaaaca aaagaaaagc tcgaattggg gagacaaaat ctgcaaacag cacccagaaa 1980 tgggtgatct cacaaaaggc ttcgggtggc cccagttcgg cgcgaaagct gaactgaaat 2040 cgctgcggct acaagccgcg cgttggctgg aacgtgccca gtcagttaaa atcccctcac 2100 ctgaggagcg ggagcacgtt atagagagat gctgccgggc gtatcaagca gccaaaacaa 2160 atggcccgat ggctacgaga ggagatcgac tttcctggga caatttccta caggatttta 2220 aacaggcggt cctctcgtta gaaatggatg caggcatagg agtcccgtac atagcttacg 2280 gcaaaccgac ccaccgagga tgggttgaag ataagcaact cctaccgata ttggctcgtc 2340 tcaccttcaa ccggctacag aagatgttgg aggtaaggca tgatgactta tcgcctgcag 2400 agcttgtgcg agagggtctc tgtgatccta ttcgagtgtt cgtaaaagga gaaccgcaca 2460 agcagtccaa attagatgaa ggccgctacc gcctcatcat gagtgtctct ctagtcgacc 2520 aattggtagc ccgggtttta ttccaaaatc aaaacaagcg cgagatagcg ttgtggagag 2580 tggttccctc caagcccggt tttggcttgt ctacggatga gcaagtggtg gagttcatgc 2640 agattctctc cgcccaggtt gggctaacgc cttcggaatt gatcaccgag tggcgagccc 2700 acatgatagc aactgactgc tccggttttg actggagcgt ttcggactgg cttcttgaag 2760 atgacatgga agtccgaaac cgcctgacgc tagatttaaa tgaaaccacg cgccgtttac 2820 gagcagcatg gttattctgc atatcaaaca gcgtcctctg cctttctgac ggaacattat 2880 tagcgcagag agtcccaggc gtgcagaaga gcggcagcta caatacgtca tcgagcaatt 2940 cccgtattcg ggtgatggct gcctaccact gcggcgcaga atgggcaatg gcgatgggcg 3000 acgacgccct agagtcagct tgctcgaacc tcgagcgtta caaatcgctc ggttttaaag 3060 tcgaggagtc ctcaaaactg gaattctgtt ctcacatctt tgagaaagag gacctcgcca 3120 ttccggtcaa caaggcaaag atgctttaca agctcataca tggctatgaa ccggaatgtg 3180 gcaatgtgga agtgctgatt aattacctgg ccgcctgttt ctcaattctc aatgagttgc 3240 ggtctgatcc ttcccttgtc gagactctcc accagtggct ggtccttcca gtgcagccac 3300 aaaagatata aggggagtat aaagaacact agccaagcac acacgagttg caagcattgg 3360 aagtataagt ctcgttacca agagtccaca caatagatta caaatttctc gcaggatttt 3420 ctagcggtct attgtctgca gtaccagtta cggtaatagg actctatttt gtctacctaa 3480 agatttcagc acacgtgcgc tcaattgtta atgaatacgg ccgcggctag aaatcaaaat 3540 gcagggaggc ggaggcgaag aaatcagcgc tctatacggc gcgaccgcgt ggttgtggtc 3600 aacccctctg ggggaccacc acgcggaaga cgacaacgaa gaaaccgccg acgccttaat 3660 cgaggaggca gagctagagg aaggagccca ggcgaaacat tcgtattttc aaaggacaat 3720 ctcacgggca gttcctcagg aagtatcacc ttcgggccgt ctctatcaga gagcccagca 3780 ttcagctctg gaatactcaa ggcctaccat gaatataaga tcatcatggt ccagctggag 3840 ttcatctccg aggcctcttc cacctcctcg ggctccatct cttatgagct ggacccccac 3900 tgcaagctta gctccctcca atccacgatt aataaatttg gaatcaccaa gaatggatta 3960 cgacgttggg cagctaggca gatcaacggg atggaatggc atgacgcaac tgaggaccaa 4020 ttcaagatcc tctacaaagg gaacggatct tcctcggttg caggcagctt caggatcacc 4080 atcaagtgcc aggtccaaaa cccgaaatag gtagacggca gctccccccc ccctcccagt 4140 cctagcccga ctccaccacc tccaccacct cctcagcctc aacctcagcc ttgcgctcag 4200 cgcttttggg gttatgaagg caacccacaa aataagatac tcacggcaga aaattcgcgg 4260 aacattgatt cccggccgtt gaactttgtg caaatgtaca agtgggagga tgaaaagtgg 4320 gataaggtca acttacaagc cggatactcc cgcaacgatc gacgttgcat ggagacgtat 4380 ctcacaattc cagcagacaa aggaaaattt cacgtttatc ttgaagctga tggtgagttc 4440 gtcgtcaaac atattggcgg cgagttagac ggcagttggc ttggaaatat cgcctacgat 4500 gtttcccaga gaggttggaa tattggaaat tacaaaggtt gcaaaattaa aaattatcaa 4560 tctaacacaa cctttgtggc aggacacccc gatgctacaa tgaactcaaa aagtttcgac 4620 tcagcacggg cagttgaagt cgattggtac gcttccttcg aactagaatg tgacgatgaa 4680 gaaggaagtt gggctatata cccccccccc atacaaaagg attcttcgta taattacacc 4740 gtttcatacg ggaactacac ggagaaatat tgcgagtggg gggctatttc agtctcaatc 4800 gatgaagata acaatgggag cgcgcctaga agaataccac gcaagggggc aatggcgtgg 4860 tctacccctg agccgtcttt ttcgggggat gaaagtcaaa gacaagactc taaaactcct 4920 tcgcccgaag agcgaggttc cgatactctg gaatcggaaa cgaagaagga agaggcaaac 4980 cttcaagtgg catttgaaga ggagaatata cccgatgttg aagatgaaga catctggaag 5040 ggtatttctc gaggttcgga aaccgaaacc actgaagacg atcgagcatc aacaagctct 5100 cgtcttcgcg gtaacctcaa gccacaaggc ctacctaaac cacagcccac ccggactata 5160 acccagttca accctaatcc agatttggtg gaggcgtgga ggcctgatct agcacctgga 5220 tactccaaag cggacgtcgc agcagcgacc gtgatcgcag gagggagcat ccacgaggga 5280 cgagatatgc tcaggcgaag agaagagtca gtgatggata gcaggaagaa atggggagtt 5340 ctctcctcgg cttctactct cactagtggc tctttaaaga aacttagtgc acagtcagaa 5400 aagctcgcca agttgacaac tggcgagcgt agagaatatg agcgaattaa aaactcgcaa 5460 ggtaagactg ttgcagccga gtatctcgaa ctggtgctag ctgacaaaac ctcataaccg 5520 ctctgtggag acaagcgtga ctccacccgg catccagtga gcccgaccaa atcactgatg 5580 acatcaagcc aaagatgtaa aattggaacg actccgaaag gataggcaac gaacgttccc 5640 actttagtgg agacaggggg attccccctg gcgtttcggt gt 5682 //