ID GQ221223; SV 1; linear; genomic RNA; STD; VRL; 5682 BP. XX AC GQ221223; XX DT 02-JAN-2012 (Rel. 111, Created) DT 02-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Cucurbit aphid-borne yellows virus isolate CABYV-FJ, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5682 RA Shang Q., Xiang H., Han C., Li D., Yu J.; RT "Complete sequence analyze of Fujian isolate of Cucurbit aphid-borne RT yellows virus from China"; RL Unpublished. XX RN [2] RP 1-5682 RA Han C.; RT ; RL Submitted (28-MAY-2009) to the INSDC. RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West RL Road, Haidian District, Beijing 100193, China XX DR MD5; 7defefa6bc0d19789eb502b3be65f57c. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4337425; 24372390. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4677746; 26673519. DR EuropePMC; PMC5712577; 29238357. XX FH Key Location/Qualifiers FH FT source 1..5682 FT /organism="Cucurbit aphid-borne yellows virus" FT /host="squash" FT /isolate="CABYV-FJ" FT /mol_type="genomic RNA" FT /country="China:Fujian" FT /db_xref="taxon:91753" FT 5'UTR 1..20 FT CDS 21..740 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:G8Z1W4" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:G8Z1W4" FT /protein_id="ADG26764.1" FT /translation="MHIESVQQQLIFRPTRRASTEDRRLNTAYFLINHVFFLAQNGSKI FT LFRLFLARLPLLISEQLSGDYVYTPGASERIILARFHRHCGAPLPSSSAVDLRLPTTKD FT VARFFLARHYSRIMGERLQRNQTSLFRGYAEFTKFINVWCSSISYRLGESAPRDFSSSR FT VFVELSYLGDSLCDLVFTSGVHNRDALARVALHIHRIYGEDGGLDFWRLANLPSKSWPF FT NDARYLEGSVVQKILQR" FT CDS join(142..1488,1488..3311) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /db_xref="GOA:G8Z1W5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:G8Z1W5" FT /protein_id="ADG26766.1" FT /translation="MEAKYFSAFFLLAFLCSSVSSYQGTMFIPLEPANASYWLDSTAIA FT VPPSPPQVQLIYDCPPQKMLRDFSSRDITRELWGRGYNETRLAFSEAMQNLQNLLMSGV FT RQFRTGLESLLHVIFQAVAYLWSSLIWATACATWYLLREYTIEMLSLASLYISTVYMVK FT MAAWIFGDLPIFLLKAGLSTMRGISKALWFRRSYNAEKSVEGFLSFKIPQSPPKHSVLQ FT VQYKDGSHAGYATCVTLYNGTNGLLTAHHVAVPGSKIVSTRNGNKIPLSEFRSIMESEK FT RDLVLLAGPPNWEGTLACKAVHFQDAQSLCKSKATFYAYDGEEWTSSNADIVGIAQGKT FT HASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKEENANYMAPIPGIYGLTSPSYEFETTA FT PQGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSQRHQADYEYESGKRAGGRDRR FT NNRTKCHPRGWAQKWRRTVSCCSLFPEGQHVHTSEQTGEPHCFCSIPHHQCFHRHVVGN FT QTSHNGQNRCPFNREAGGSSPGGSSHEETQVAQTRQEKFEKLTADFSCFFDTQYIWERG FT GEEAPGFDKVGSLPQFYHAKQKKSSNWGDKICKRHPEMGDLTKGFGWPQFGPETELKTL FT RLQAACWVERAQSVKIPSPEEREHVIERCCRAYRAAKTNGPMATRGDRLSWDNFLQDFK FT QAVLSLEMDAGIGVPYIAYGKPTHRGWVEDKQLLPILARLTFNRLQKMLEVRHDDLSPA FT ELVREGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALW FT RVVPSKPGFGLSTDEQVVEFMQILSAQVGLTPSELITEWRAHMIATDCSGFDWSVSDWL FT LEDDMEVRNRLTLDLNETTRRLRAAWLYCISNSVLCLSDGTLLAQRVPGVQKSGSYNTS FT SSNSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKSLGFKVEESSKLEFCSHIFEK FT EDLAIPVNKAKMLYKLIHGYEPECGNVEVLVNYLAACFSILNELRSDPSLVETLHQWLV FT LPVQPQKI" FT CDS 142..2037 FT /codon_start=1 FT /product="P1" FT /db_xref="GOA:G8Z1W6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:G8Z1W6" FT /protein_id="ADG26765.1" FT /translation="MEAKYFSAFFLLAFLCSSVSSYQGTMFIPLEPANASYWLDSTAIA FT VPPSPPQVQLIYDCPPQKMLRDFSSRDITRELWGRGYNETRLAFSEAMQNLQNLLMSGV FT RQFRTGLESLLHVIFQAVAYLWSSLIWATACATWYLLREYTIEMLSLASLYISTVYMVK FT MAAWIFGDLPIFLLKAGLSTMRGISKALWFRRSYNAEKSVEGFLSFKIPQSPPKHSVLQ FT VQYKDGSHAGYATCVTLYNGTNGLLTAHHVAVPGSKIVSTRNGNKIPLSEFRSIMESEK FT RDLVLLAGPPNWEGTLACKAVHFQDAQSLCKSKATFYAYDGEEWTSSNADIVGIAQGKT FT HASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKEENANYMAPIPGIYGLTSPSYEFETTA FT PQGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSQRHQADYEYESGNGQAAATAE FT TTAPNATPAVGRKSGDAQSPVAPSSPKVNTYTPPNKRENRTASAVSPTTNASTDTLSEI FT KQAIMDKIDVRSIEKQVVQALADQAMKKPKSRKRGKRSSKSSQQTSPVSSTPSTSGNGA FT GKKPQDSTRSDPSPSFTTLSKRKARIGETKSANGTQKWVISQKASGGPSSARKLN" FT misc_feature 3312..3510 FT /note="intergenic non-coding region (NCR)" FT CDS 3511..5517 FT /codon_start=1 FT /transl_except=(pos:4108..4110,aa:OTHER) FT /product="read-through protein P3-P5" FT /db_xref="GOA:G8Z1W7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:G8Z1W7" FT /protein_id="ADG26769.1" FT /translation="MNTAVARNQNAGRRRRRNQRSIRRDRVVVVNPSGGPPRGRRQRRN FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSTGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAARQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPKXVDGSSPPPPSPSPTPPPPPPPQ FT PQPQPCAQRFWGYEGNPQNKILTAENSRNIDSRPLNFVQMYKWEDEKWDKVNLQAGYSR FT NDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIGN FT YKGCKIKNYQSNTTFVAGHPDATMNSKSFDSARAVEVDWYASFELECDDEEGSWAIYPP FT PIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNNGSAPRRIPRKGAMAWSTPGPSFS FT GDESQRQDFKTPSPEERGSDALESEETKEEENLLDRLEEENIPDADDEDIWKGISRGSE FT TGTTEDDRASTSSRLRGNLKPQGLPKPQPTRTITKFDPDPDLVEAWRPDLAPGYSKADV FT AAATVIAGGSIHEGRDMLRRRDEKVMDSRKKWGILSSASSLTSGSLKKLSAQSEKLAKL FT TTGERAEFERIKNSRGKTVAAEYLEVVLADKTS" FT CDS 3511..4110 FT /codon_start=1 FT /product="coat protein" FT /note="CP; P3" FT /db_xref="GOA:G8Z1W8" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:G8Z1W8" FT /protein_id="ADG26767.1" FT /translation="MNTAVARNQNAGRRRRRNQRSIRRDRVVVVNPSGGPPRGRRQRRN FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSTGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAARQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT CDS 3539..4114 FT /codon_start=1 FT /product="movement protein" FT /note="MP; P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:G8Z1W9" FT /protein_id="ADG26768.1" FT /translation="MQGGGGEEISALYGATAWLWSTPLGDHRAEDDNEETADALIEEAE FT LEEGAQAKHSYFQRTISRAVPQEVSPSGRLYQRAQHSALEYLRPTMNIRSSWSSWSSSP FT RPLPPPRAPSLMSWTPTASLAPSNPRLISLESPRMDYDVGQPGRSTGWNGMTQLRTNSR FT SSIKGTDLPRLQAASGSPSSARSKTRNR" FT 3'UTR 5518..5682 XX SQ Sequence 5682 BP; 1560 A; 1439 C; 1427 G; 1256 T; 0 other; acaaaagata cgagcgggtg atgcatattg agtctgttca gcaacaacta atattcagac 60 caacccgacg tgcgagcaca gaagatcgaa ggttaaacac agcatacttt ctgatcaacc 120 acgttttctt tttggcgcaa aatggaagca aaatactttt ccgccttttt cttgctcgcc 180 ttcctctgct catcagtgag cagctatcag gggactatgt ttatacccct ggagccagcg 240 aacgcatcat actggctcga ttccaccgcc attgcggtgc ccccctcccc tcctcaagtg 300 cagttgatct acgactgccc accacaaaag atgttgcgcg atttttcctc gcgcgacatt 360 actcgagaat tatgggggag aggttacaac gaaaccagac tagccttttc agaggctatg 420 cagaatttac aaaatttatt aatgtctggt gttcgtcaat ttcgtacagg cttggagagt 480 ctgctccacg tgatttttca agcagtcgcg tatttgtgga gctctcttat ttgggcgaca 540 gcctgtgcga cttggtattt acttcgggag tacacaatcg agatgctctc gctcgcgtcg 600 ctttacatat ccaccgtata tatggtgaag atggcggctt ggatttttgg cgacttgcca 660 atcttccttc taaaagctgg cctttcaacg atgcgaggta tctcgaaggc tctgtggttc 720 agaagatcct acaacgctga gaaatccgtc gaaggatttc tctcattcaa aataccacag 780 agccctccca aacactcggt tttacaggtc caatataaag atggatccca cgccgggtat 840 gctacctgtg tgacgcttta caatggaacg aacgggcttc tgactgccca tcacgtagct 900 gtcccaggta gcaaaattgt ctccaccagg aatggaaaca agatcccact ttccgaattt 960 agatcaatca tggaatctga aaagagggat ctcgtgcttt tggctggacc ccccaactgg 1020 gagggaactt tagcttgtaa agcagtccac ttccaagatg cccaaagtct ttgcaaatca 1080 aaagcaacct tctacgctta tgacggagaa gagtggactt catccaatgc tgacatagtt 1140 ggcattgcgc agggcaaaac ccacgcttca gtgttaagta acacggacgc gggtcatagt 1200 ggcaccccat actttaatgg cagaactgtt ttgggtgtcc acgtcggtgg ggcaaaagaa 1260 gaaaatgcca attacatggc cccgatacct ggaatttatg gtctcaccag cccaagttat 1320 gaatttgaga ccacggcacc ccaaggacgc ctgttcacac aggaagaaat agaagaactc 1380 attgaagaat tttccttcag tgagataaca tccattatgg ggcatcgccg attccaccaa 1440 atgcacgact cgcagcgaca tcaagctgat tacgagtacg agtcgggaaa cgggcaggcg 1500 gccgcgaccg ccgaaacaac cgcaccaaat gccacccccg cggttgggcg caaaagtgga 1560 gacgcacagt ctcctgttgc tccctcttcc ccgaaggtca acacgtacac acctccgaac 1620 aaacgggaga accgcactgc ttctgcagta tcccccacca ccaatgcttc caccgacacg 1680 ttgtcggaaa tcaaacaagc cataatggac aaaatcgatg tccgttcaat cgagaagcag 1740 gtggttcaag ccctggcgga tcaagccatg aagaaaccca agtcgcgcaa acgcggcaag 1800 agaagttcga aaagctcaca gcagacttct cctgtttctt cgacacccag tacatctggg 1860 aacggggcgg ggaagaagcc ccaggattcg acaaggtcgg atccctcccc cagttttacc 1920 acgctaagca aaagaaaagc tcgaattggg gagacaaaat ctgcaaacgg cacccagaaa 1980 tgggtgatct cacaaaaggc ttcgggtggc cccagttcgg cccggaaact gaactgaaaa 2040 cactgcggct acaagcggcg tgttgggtgg aacgtgccca gtcagttaaa atcccctcac 2100 ctgaggagcg ggagcacgtt atagagagat gctgtcgggc gtatcgagca gctaaaacaa 2160 atggcccgat ggctacgaga ggagatcgac tttcctggga caatttccta caggatttta 2220 aacaggcggt cctctcgtta gaaatggatg caggcatagg agtcccgtac atagcttacg 2280 gcaaaccgac ccaccgagga tgggttgaag acaagcaact cctaccgata ttggctcgtc 2340 tcaccttcaa ccggctacag aagatgttgg aggtaaggca tgatgactta tcacctgcag 2400 agcttgtgcg agagggtctt tgtgatccta ttcgagtgtt cgtaaaagga gaaccgcaca 2460 agcagtccaa attagatgaa ggccgctacc gcctcatcat gagtgtctct ctagtcgacc 2520 aattggtagc ccgggtttta ttccaaaatc aaaacaagcg cgagatagcg ttgtggagag 2580 tggttccctc caagcccggt tttggcttgt ctacggatga gcaagtggtg gagttcatgc 2640 agattctctc cgcccaggtt gggctaacgc cttcggaatt gatcaccgag tggcgagccc 2700 acatgatagc aactgactgc tccggttttg actggagcgt ttcggactgg cttcttgaag 2760 atgacatgga agtccgaaac cgcctgacgc tagatctaaa tgaaaccacg cgccgtttac 2820 gagcagcatg gttatattgc atatcaaaca gcgtcctctg cctttctgat ggaacattat 2880 tagcgcagag agtcccaggc gtgcagaaga gcggcagcta caatacgtca tcgagcaatt 2940 cccgtattcg ggtgatggct gcctaccact gcggcgcaga atgggcaatg gcgatgggcg 3000 acgacgccct ggagtcagct tgctcgaacc tcgagcgtta caaatcgctc ggttttaaag 3060 tcgaggagtc ctcaaaactg gaattttgtt ctcacatctt tgagaaagag gacctcgcca 3120 ttccggttaa caaggccaag atgctttaca agctcataca tggctatgaa ccggagtgtg 3180 gcaatgtgga agtgctggtt aattacctgg ccgcctgttt ctcaattctt aatgagttgc 3240 ggtctgatcc ttcccttgtc gaaactctcc atcagtggct ggtccttcca gtgcagccac 3300 aaaagatatg aggggagtat aaagaacact agccaagcgc acacgagttg caagcattgg 3360 aagtataagt ctcgttacca agagtccaca caatagatta caaatttctc gcagggtttt 3420 ctagcggtct attgtctgca gtgccagtca cggtaatagg actctatttt gtctacctaa 3480 agatttcagc acacgtgcga tcaattgtta atgaatacgg ccgtggctag aaatcaaaat 3540 gcagggaggc ggaggcgaag aaatcagcgc tctatacggc gcgaccgcgt ggttgtggtc 3600 aacccctctg ggggaccacc gcgcggaaga cgacaacgaa gaaaccgccg acgccctaat 3660 cgaggaggca gagctagagg aaggagccca ggcgaaacat tcgtattttc aaaggacaat 3720 ctcacgggca gttccacagg aagtatcacc ttcgggccgt ctctatcaga gagcccagca 3780 ttcagctctg gaatacttaa ggcctaccat gaatataaga tcatcatggt ccagctggag 3840 ttcatctccg aggcctcttc cacctcctcg ggctccatct cttatgagtt ggacccccac 3900 tgcaagctta gctccctcca atccacgatt aataagtttg gaatcaccaa gaatggatta 3960 cgacgttggg cagccaggca gatcaacggg atggaatggc atgacgcaac tgaggaccaa 4020 ttcaagatcc tctataaagg gaacggatct tcctcggttg caggcagctt caggatcacc 4080 atcaagtgcc aggtccaaaa cccgaaatag gtagacggca gctccccccc ccctcccagt 4140 cctagcccga ctccaccacc tccaccacct cctcagcctc aaccccaacc ttgcgctcag 4200 cgcttttggg gttatgaagg caacccacaa aataagatac tcacggcaga aaattcgagg 4260 aacattgatt cccggccgtt gaactttgtg caaatgtaca agtgggagga tgagaagtgg 4320 gataaggtca acttacaagc cggatactcc cgcaacgatc gacgttgcat ggagacgtat 4380 ctcacaattc cagcagacaa aggaaaattt cacgtttatc ttgaagctga tggtgagttc 4440 gtcgtcaaac atattggcgg cgagttagac ggcagttggc ttggaaatat cgcttacgat 4500 gtttcccaga gaggttggaa tattggaaat tacaaaggtt gcaaaattaa aaattatcaa 4560 tccaacacaa cctttgtggc agggcacccc gatgctacaa tgaattcgaa aagttttgat 4620 tcagcacggg cagttgaggt cgattggtac gcttccttcg aactcgaatg tgatgacgaa 4680 gaaggaagtt gggctatata cccccccccc atacagaagg attcttcgta taattacacc 4740 gtatcgtacg gaaattacac ggagaaatat tgcgagtggg gggctatttc agtctcgatc 4800 gatgaagata acaatgggag cgcgcctaga agaataccac gcaagggggc aatggcgtgg 4860 tccacccccg ggccgtcctt ttcgggggat gaaagtcaaa gacaagactt taaaactcct 4920 tcgcccgaag agcgaggttc cgatgctctg gaatcggaag aaacgaagga agaggaaaac 4980 cttctagaca ggctagagga agaaaatata cccgatgccg atgatgaaga catttggaag 5040 ggtatttccc ggggctctga aaccgggacc acagaagatg atcgagcgtc aaccagctct 5100 cgtcttcgtg gtaacctcaa gccacaaggc ctaccaaaac cacagcctac ccggactata 5160 accaaatttg atcctgatcc agatttggta gaggcgtgga ggcctgacct agcacctgga 5220 tactccaaag cggacgtcgc agcagcgacc gtgatcgcag gagggagcat ccacgaggga 5280 cgagatatgc ttaggcgaag agacgagaaa gtgatggata gcaggaagaa atggggaatt 5340 ctttcctcag cctcctctct cactagcggt tctctaaaga aactcagcgc gcagtcggag 5400 aagcttgcca agttgacaac tggtgagcgt gcagaatttg agcgaatcaa gaattcgcgt 5460 ggtaagactg ttgcagcaga gtatctcgaa gtggtgctag ctgataaaac ctcataaccg 5520 ctctgtggag acgagcgtga ctccacccgg cagccagtgg gcccgaccaa atcactgatg 5580 acatcaagcc aaagatgtaa aattggaacg actccggaag gataggcaac gaacgttccc 5640 accttagtgg aaacagggga attccccctg gcgtttcggt gt 5682 //