ID GQ220850; SV 1; circular; genomic DNA; STD; VRL; 2751 BP. XX AC GQ220850; XX DT 07-JUL-2009 (Rel. 101, Created) DT 08-MAR-2010 (Rel. 104, Last updated, Version 3) XX DE Cotton leaf curl Rajasthan virus - India [India:Sri-Ganganagar:2008] DE segment DNA-A, complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus - India [India:Sri-Ganganagar:2008] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2751 RX DOI; 10.1007/s11262-009-0439-x. RX PUBMED; 20043195. RA Kumar A., Kumar J., Khan J.A.; RT "Sequence characterization of cotton leaf curl virus from Rajasthan: RT phylogenetic relationship with other members of geminiviruses and detection RT of recombination"; RL Virus Genes 40(2):282-289(2010). XX RN [2] RP 1-2751 RA Kumar A., Kumar J., Khan J.A.; RT "Complete nucleotide sequence of Cotton leaf curl virus isolated from RT Sri-Ganganagar, Rajasthan, India"; RL Unpublished. XX RN [3] RP 1-2751 RA Kumar A., Kumar J., Khan J.A.; RT ; RL Submitted (28-MAY-2009) to the INSDC. RL Molecular Virology Lab, National Botanical Research Institute, Rana Pratap RL Marg, Lucknow, Uttar Pradesh 226 001, India XX DR MD5; cccc48d3451413ef3f7a96dd466c9b75. XX FH Key Location/Qualifiers FH FT source 1..2751 FT /organism="Cotton leaf curl Rajasthan virus - India FT [India:Sri-Ganganagar:2008]" FT /segment="DNA-A" FT /host="Gossypium hirsutum" FT /isolate="Sri-Ganganagar" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Abhinav Kumar" FT /collection_date="Aug-2008" FT /db_xref="taxon:693896" FT gene 183..485 FT /gene="AV2" FT CDS 183..485 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:C6KHW4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C6KHW4" FT /protein_id="ACT09132.1" FT /translation="MLSVKYLQLLSQDYSPDTLGYELIRDLICILRSRNYVEASCRYRH FT FYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQEAQDVQDVQKSRCS" FT gene 289..1059 FT /gene="AV1" FT CDS 289..1059 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:C6KHW5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C6KHW5" FT /protein_id="ACT09133.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1062..1466) FT /gene="AC3" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:C6KHW6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C6KHW6" FT /protein_id="ACT09134.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1159..1611) FT /gene="AC2" FT CDS complement(1159..1611) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:C6KHW7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C6KHW7" FT /protein_id="ACT09135.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1508..2596) FT /gene="AC1" FT CDS complement(1508..2596) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:C6KHW8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C6KHW8" FT /protein_id="ACT09136.1" FT /translation="MPPKRNGFYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGNKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARPNRPISLVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNQGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2139..2442) FT /gene="AC4" FT CDS complement(2140..2442) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C6KHW9" FT /protein_id="ACT09137.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREISRRLLESLRN" XX SQ Sequence 2751 BP; 736 A; 555 C; 625 G; 835 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaac atgtgtccac tattaaacga attcccctga tacggttcac gggtttcggt 180 gtatgctttc tgtgaaatat ttgcaacttt tgtcgcagga ttattcaccg gatacgcttg 240 ggtacgagtt aatacgggat ttaatttgta ttttacgctc ccgtaattat gtcgaagcga 300 gctgccgata tcgtcatttc tacgcccgcg tcgaaagtac gccggcgtct gaacttcggc 360 agcccataca ccagccgtgc tgctgccccc attgtccgcg tcacaaaaca acaggcatgg 420 acaaacaggc ctatgaacag gaagcccagg atgtacagga tgtacagaag tccagatgtt 480 cctagaggat gtgaaggtcc atgtaaggtt cagtcgtttg agtccagaca tgatattcag 540 catataggta aagtaatgtg tattagtgat gttactcgtg gtactgggct gacccataga 600 gttggtaaga gattttgtgt caagtctgtt tatgtgttgg gtaagatatg gatggatgag 660 aacattaaga cgaagaatca cacgaatagt gtgatgtttt tcttggttag agatcgtaga 720 cctgttgata aacctcaaga ttttggagag gtatttaata tgtttgataa tgagcccagt 780 acggcgactg tgaagaatgt tcatcgtgat aggtatcaag ttctgcgcaa atggtatgca 840 actgtcaccg gtggacaata cgcttcaaag gaacaggctt tggtcaagaa gtttgtcaga 900 gttaacaatt atgttgttta caatcaacag gaagcaggaa aatacgagaa tcatacggaa 960 aatgcgttaa tgctttatat ggcttgtact cacgctagca accctgttta tgctacgttg 1020 aagattagga tatattttta tgactctgta acgaattgat attaatgaag tttgaatttt 1080 atttctgaat attgatctac atacatagtt tgttggatta cattgtacaa tacatgttct 1140 acagctttaa taactaaatt aattgaaatt acaccgagat tgttcagata tttgaggact 1200 tgggttttga atacccttaa gaaaagacca gtctgaggct gtaaggtcgt ccagattcgg 1260 aatgttagaa aacacttgtg cagtcccaga gctttccgag tgttgtagtt gaactggatc 1320 ctgatcgtga gtatgtccat attcgtcgtg aatggacggt tgacgtggct gatgatcttg 1380 aaataaaggg gatttggaac ctcccagata tatgcgccat tccctgcttg agctgcagtg 1440 atgggttccc ctgtgcgtga atccatggtt gtggcagttg attgacagat aataagaaca 1500 cccgcattca agatctactc tcctcctcct gttgcgcctc ttcgcttccc tgtgctgtac 1560 tttgattggt acctgagtac atgggtctat caagtgtgat gaagatcgca ttctttaaag 1620 cccaattttt tagtgcagaa ttcttctctt catccaaaaa ctctttatag cttgaattgg 1680 gtccttgatt gcagaggaag atagtgggaa ttccgccttt aatttgaact ggcttcccgt 1740 attttgtatt tgattgccag tccttttggg cccccatgaa ctccttaaag tgctttaggt 1800 aatgcgggtc gacgtcatca atgacgttaa accaggcgtc attactgtat acccttgggc 1860 tcagatctag atgtccacac agataattat gtggacctaa tgatctggcc cacatcgtct 1920 tccccgtcct actgtcaccc tcaatcacta aacttattgg tctattgggc cgcgcagcgg 1980 cactgacgac gttctcggca gcccacactt caagttcttc tggaacttga tcgaaagaag 2040 aagaggaaaa aggagaaaca taaggagctg gtggctcctg aaagattctg tctagatttg 2100 catttaaatt atgaaattgc agtacaaaat ccttaggagc tagttcctta atgactctaa 2160 gagcctccga cttatttccc gcgttaagtg ctgcggcgta agcgtcattg gctgtctgtt 2220 gccctcctct tgctgacctt ccgtcgatct gaaattgccc ccagtcgaga atgtccccgt 2280 ccttctcgat gtaggatttg acgtcggagc tggatttagc tccctgtatg ttcggatgga 2340 aatgtgctga cctgcttggg gagaccaagt cgaagaatcg catattctgg cacttgaatt 2400 tcccttcgaa ctggatgaga acatgcaagt gaggagtccc atcttcgtga agctctctgc 2460 agattctaat atattttttt gaagttgggg tttgtatatt taataattgg gaaagtgctt 2520 cctctttggt gagagaacat ttgggataag tgatgaaata gtttttggaa taaaaaccgt 2580 tccgctttgg aggcatgttg actaaaattg atcaccgatt gaccgctctt gcaactctcc 2640 ccggtatatc ggtgatcaat atatagtgat caccaaatgg cataatggta ataaaaaaac 2700 tttaatttga aattcaaacc aaaaggctaa agcggccatc cgtttaatat t 2751 //