ID GQ200446; SV 1; circular; genomic DNA; STD; VRL; 2738 BP. XX AC GQ200446; XX DT 21-JUL-2010 (Rel. 105, Created) DT 21-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Papaya leaf curl virus [India:Pratapgarh1:2008] clone SHLD-NIFL-Pra-01 DE segment DNA-A, complete sequence. XX KW . XX OS Papaya leaf curl virus [India:Pratapgarh1:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2738 RA Das A., Ghosh R., Roy A.; RT "Characterization of Begomovirus complex associated with leaf distortion RT disease of sunhemp from India"; RL Unpublished. XX RN [2] RP 1-2738 RA Das A., Ghosh R., Roy A.; RT ; RL Submitted (23-MAY-2009) to the INSDC. RL Crop Protection, Central Research Institute for Jute & Allied Fibres, RL Nilgunj, Kolkata, West Bengal 700120, India XX DR MD5; 4b92bc7029a8debf0b6d3161255bb6ac. XX FH Key Location/Qualifiers FH FT source 1..2738 FT /organism="Papaya leaf curl virus [India:Pratapgarh1:2008]" FT /segment="DNA-A" FT /host="Crotalaria juncea" FT /mol_type="genomic DNA" FT /country="India:Pratapgarh" FT /collection_date="2008" FT /clone="SHLD-NIFL-Pra-01" FT /db_xref="taxon:655357" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:E2CT20" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E2CT20" FT /protein_id="ACT82444.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPLCEPCCCPHCPRHQGKGMGEQAHEQ FT KAQDVQDVQKSRCS" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E2CT21" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:E2CT21" FT /protein_id="ACT82445.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRVAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKIQSFESRHDIQHIGKVCVSVMLLVTGTDPYS FT EKRFRDQSVLCVRVRYDDENIDQITRSCDVFPSQRSSTSCEPQIGRVFTMFCNRARLRR FT LLRMFIVIGIKCCANGMQLSPVDNTLQRNKLSCRSYRVIIMLCITSKKLASMRIILRML FT SCCIWRVLTLLTQCMLLCRYGSTSMIPRQINKYC" FT gene complement(1060..1464) FT /gene="AC3" FT CDS complement(1060..1464) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E2CT22" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E2CT22" FT /protein_id="ACT82446.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNRDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPIGRFLRVFKTQVLKYLNNLGIVSINN FT VIRSVDHVLWNVLEHVVYVDQSSSIISNIY" FT gene complement(1205..1609) FT /gene="AC2" FT CDS complement(1205..1609) FT /codon_start=1 FT /gene="AC2" FT /product="transcription enhancer protein" FT /db_xref="GOA:E2CT23" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E2CT23" FT /protein_id="ACT82447.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRAPQQAIPNEQRHHHRPDTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGL" FT gene complement(1512..2597) FT /gene="AC1" FT CDS complement(1512..2597) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:E2CT24" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E2CT24" FT /protein_id="ACT82448.1" FT /translation="MPRINSFCVNTKNIFLTYPKGPIPKEQMLEILHAIDCPSDKLFIR FT VAQEKHQVGSLHIHALIQFKGKSKFRNPRHFDVTHPNNSTQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKCNLERIYTPPMEVYVSPFSSSSFDQVPEELEEWAAVNVVSAAARANRPISVVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYDMILDEENDSALNNWALKNAIFVTLEGPL FT YSGSNQSATQASQEGDQTSES" FT gene complement(2183..2500) FT /gene="AC4" FT CDS complement(2183..2500) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E2CT25" FT /protein_id="ACT82449.1" FT /translation="MQSIAHLINYLSEWHKKNTKLGLCISMPSSSSKVNPSSETPDISM FT SLTLITPHNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMDDLLEEVNRQLMMLQQR FT P" XX SQ Sequence 2738 BP; 742 A; 562 C; 631 G; 803 T; 0 other; accggatggc cgcgattttt tttgtggccc ccacaaagca ctaactgaca atgacatatg 60 gcccaatcag aatcgttcct cgtagcctaa ttgtttcctg gtccccccta taaacttagt 120 gcgcaagttg tgttttccat tcactatgtg ggatccgtta ttgaacgagt ttcccgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagttagtag aaaatacgta 240 ttccccagat actctgggat acgatttaat tagggatttg atttcagtaa taagggctag 300 gaattatgtc gaagcgacca gcagatataa tcatttccac gcccgcttcg aaggtacgtc 360 gccgtctcaa cttcgacagc ccctatgtga gccgtgttgc tgcccccatt gtccgcgtca 420 ccaaggcaaa ggcatgggcg aacaggccca tgaacagaaa gcccaggatg tacaggatgt 480 acagaagtcc agatgttcct agaggatgtg aaggcccatg taagattcag tcctttgagt 540 ccagacatga tattcagcat ataggtaaag tatgtgtgtc agtgatgtta ctcgtgactg 600 ggactgaccc atacagtgag aagagatttc gtgatcagtc tgtgttatgt gttcgggtaa 660 gatatgatga tgagaacata gaccagatca cacgatcgtg tgatgtcttt cctagtcaga 720 gatcgtcaac cagttgtgaa cctcagattg ggagagtgtt taccatgttt tgtaaccgag 780 ccagattacg gcgactgtta agaatgttca tcgtgatagg tatcaagtgc tgcgcaaatg 840 gtatgcaact gtcaccggtg gacaatacgc ttcaaaggaa caagctctcg tgcagaagtt 900 atagggtaat aattatgttg tgtataacca gcaagaagct ggcaagtatg agaatcattc 960 tgagaatgct ttcatgttgt atatggcgtg tactcacgct tctaacccag tgtatgctac 1020 tttgcagata cggatctact tctatgattc cgagacaaat taataaatat tgctaattat 1080 tgaagatgat tggtctacat atacaacatg ttctaataca ttccataata catgatcaac 1140 tgatctaatt acattattaa tactgacaat tcctaagtta tttaaatact taagcacttg 1200 ggtcttaaag acccttaaga aacgaccaat cggaggctgt gaggtcatcc agattcggaa 1260 ggctaggaaa catttgtgta tccccaacgc tttcctcagg ttgtgattga actgtatctg 1320 gacggtgatg atgtctctgt tcattaggaa tggcctgttg tggtgctctg ttatcttgaa 1380 atacagggga ttttgaatct cccagataaa cacgccattc tctgcttgag ctgcagtgat 1440 gagttcccct gtgcgtgaat ccatggtcgt ggcaggctaa tgctatgaag tatgaacacc 1500 cacaaggtag atcaactctc cgacgtctgg tccccttctt ggctagcctg tgttgcactt 1560 tgattggaac ctgagtagag tgggccttcg agggtgacga agatcgcatt ctttaaagcc 1620 caattgttga gtgcagaatc gttctcttcg tccaaaatca tgtcatagct ggaattgggt 1680 cctggattac agaggaagat agtgggaatg ccacctttaa tttgaactgg ctttccgtac 1740 tttgtatttg attgccagtc cctttgggcc cccatgaatt ctttaaagtg ctttagatag 1800 tggggatcta cgtcatcaat gacgttgtac caggcctcgt tactgtagac ctttggactt 1860 aggtctaaat gaccacacaa ataattatgt ggacccagtg acctagccca cattgttttg 1920 cccgttctgc tatcaccctc tatcactaca cttattggtc tattggcccg cgcagcggca 1980 ctgacaacat tcacggcagc ccactcttca agttcttctg gaacttgatc aaaagaagaa 2040 gaagaaaaag gagaaacata gacctccatg ggaggtgtat aaatcctttc taaattacat 2100 tttaaattat gatattgaaa aataaaatct ttagggagtt tttccctaat tattgctaaa 2160 gcagcttcag ccgaacctgc gtttagggcc tctgctgcag catcattagc tgtctgttga 2220 cctcctctag cagatcgtcc atcgatctga aactgacccc agtcgatgta atcactgtcc 2280 ttctcgatgt aggacttgac atcagagctg gacttagctc cctggaagtt tgggtggaat 2340 tgtgtggagt tattagggtg agtgacatcg aaatgtctgg ggtttcggaa cttggattta 2400 cctttgaact ggatgagggc atggatatgc agagacccaa cttggtgttt ttcttgtgcc 2460 actctgataa ataatttatc agatgggcaa tcgattgcat gaagaatttc gagcatttgc 2520 tctttgggta ttgggccttt gggataagta aggaagatat ttttggtatt aacacaaaaa 2580 gagttaatac gaggcatatt gaattgggga cactcaaaac tctgaggaat gggggactcg 2640 ggggacgcag ttatatggcg tccccaaatg gccttttcgt aattacgaaa gaaatttcaa 2700 aatcctaacg ctccaaaagc ggccatccgt ataatatt 2738 //