ID GQ179646; SV 1; linear; genomic RNA; STD; VRL; 6607 BP. XX AC GQ179646; XX DT 17-SEP-2009 (Rel. 102, Created) DT 25-DEC-2009 (Rel. 103, Last updated, Version 2) XX DE Alternanthera mosaic virus isolate SP 3-1, complete genome. XX KW . XX OS Alternanthera mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6607 RX DOI; 10.1099/vir.0.014977-0. RX PUBMED; 20019006. RA Lim H.S., Vaira A.M., Reinsel M.D., Bae H., Bailey B.A., Domier L.L., RA Hammond J.; RT "Pathogenicity of Alternanthera mosaic virus is affected by determinants in RT RNA-dependent RNA polymerase and by reduced efficacy of silencing RT suppression in a movement-competent TGB1"; RL J. Gen. Virol. 91(Pt 1):277-287(2010). XX RN [2] RP 1-6607 RA Hammond J., Lim H.-S., Reinsel M.D.; RT ; RL Submitted (19-MAY-2009) to the INSDC. RL Floral and Nursery Plants Research Unit, National Arboretum, US Department RL of Agriculture, 10300 Baltimore Avenue, Building 010A, Beltsville, MD RL 20705, USA XX DR MD5; 847747cd68258523fde4bb5f4fd39b74. DR EuropePMC; PMC3560364; 23386854. XX FH Key Location/Qualifiers FH FT source 1..6607 FT /organism="Alternanthera mosaic virus" FT /host="Phlox stolonifera cv. Sherwood Purple" FT /lab_host="Nicotiana benthamiana" FT /isolate="SP 3-1" FT /mol_type="genomic RNA" FT /country="USA:Maryland" FT /collection_date="2007" FT /db_xref="taxon:85454" FT 5'UTR 1..94 FT CDS 95..4720 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:C9D744" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:C9D744" FT /protein_id="ACS28228.1" FT /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDP FT AAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQY FT FHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDTLHFLPLGAIRE FT IFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYS FT QLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT FT LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKE FT LALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEA FT LEWVDVSLSYKVETYSQANPNNQPKVMFGYEWLSTETGTPGTEEDAAPETPQEDEDPHE FT RYIQALQTLTKALDQESAPPPTEPAQCSSTSNPQQEEHFRPPHNLHTDETPSCSGSSNS FT FACHCPCGTELKVFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTGGSHASRGWPT FT FLDQILATAELVRPLPHFNQCLIQKYQRGASIPFHRDDEPCYDADHQVLTINLTGEAEF FT KISCKAGSGSCTLVENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRSTVKQSVTSEEGD FT CVEPDNLPWKAWLGKLRNLGFRGMQLQYDPNGALISPIESVKSLPKCSPEKVDPSLLKM FT LDNQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAIS FT VIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALL FT APTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF FT TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKE FT AFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNN FT QAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLD FT QMREKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANW FT QEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLKNGQA FT RQSPDYDPNMISLFLKSQWVKKMEKLGALRIKPGQTIASFHQATVMLFGTMARYMRRMR FT EIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQSQDGAMLQFEVLK FT AKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIAFTHAKFQIPK FT GTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGF FT IKDPKKLHASLVLEKKRGNLKNVLRSYELDLALAYQHRDELHELLSEEELRLHYDTVRT FT LVKSGGGEVLKTFLSKDESLY" FT CDS 4704..5402 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:C9D745" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:C9D745" FT /protein_id="ACS28229.1" FT /translation="MNHFTNLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQH FT PQARAYTHGVPDPPNLEGRFIQAFKNPDPNHFNILDEYCAEPPSGSWNVLIADPLQHRS FT QALRPHYIKRESHRLGVATCELLTRVGLPVLSNKTEDQVDYQGIFEGPLFGTVIALDST FT VRALLVKHGIPPLCPAEVLGSEFEQTTVVSEVPLSQVKFKHALYIALTRHKKSLHVRAP FT PLPDTPRRLL" FT CDS 5356..5688 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:Q52Z63" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q52Z63" FT /protein_id="ACS28230.1" FT /translation="MSGLPHSLTPPADYSKPVLAAAVGVSLALVINSFLVYRLPSPGDN FT IHQLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGHHRARLH FT RCPCCS" FT CDS 5624..5815 FT /codon_start=1 FT /product="TGB3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q52Z62" FT /protein_id="ACS28231.1" FT /translation="MPYLVEAAITVLACIGVLAALRPGSHPCTILLTGHSATISGNCGP FT VAPETIRALGDYLTGLRF" FT CDS 5858..6481 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q52Z61" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q52Z61" FT /protein_id="ACS28232.1" FT /translation="MSTPFPQVTQEQMNAFTPHTTSNLLPSPEQLTTIANLLVAAKVPA FT ASTTTIALELVNFCYDNGSSTYTAVVGPSSLAEVSLSQVANIVKASGTSLRKFCRFFAP FT IIWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRTPSQAERIAN FT ATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE" FT 3'UTR 6482..6607 XX SQ Sequence 6607 BP; 1770 A; 1917 C; 1497 G; 1423 T; 0 other; gaaaagtaaa gcaaagcaaa gcaaagcaaa ggaaccgaaa gtccatattt gcccttcgag 60 gagatcgatt acccatcccg gctagatcaa cagtatggcc cactttcgtt ccgttcttga 120 ccaaatgaat gaccccagcc ttcgggcggt catccaggaa gaagcttacc gcgaaataaa 180 gaaaaccatc gcggaaacca aacagtacaa cccttacgcc caggatccag cggcggctga 240 ctcattagaa aaattaggaa tagaatctaa ccccttctca gtccgcgctc atacacacgc 300 ggccgcgaag tcaatagaat tagacatgta caaaatcacg ggttactccc tcccgaagga 360 gaatccaatt actttccttt tcatgaagag gtccaaactt caatacttcc acagaggccc 420 acagcatgga gacttattcc ttaatgcttg tattgagcca aaggacgtca ccaggtacgc 480 cttagaagac ctctttaaac cctccacaac cccagaaatc caaaccagag tggcattcat 540 tggagacaca ctacacttcc ttcctctagg ggccatcaga gagatattta caagctcaca 600 aaagctccaa actctctatg caacaatggt actacccccc gaagccatgc acagaatgca 660 ctcaattcac cccagcatct acgagctaga attccatgaa aaaaatttta tatacaagcc 720 gggaggacat gccggggcgt cttattgcca cgaatactca caacttcagt ggctcaaggt 780 cggaaaattt gagtggtgcg acaagaaata tcagaagcac tacgtgacat cacagattct 840 ggaaaccaag ggtgcaaatc acctttttgt gttccagcgc ggcaatttcg ccacccctac 900 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat tcctcccaaa 960 gaaatacaac gcgcggtacc cgataaagaa aactgtggcg cagcagctat ttctttacat 1020 caagtccgtg aaaacagtca cggagagaga catctgggcc aaagttagac agatcataaa 1080 gaccgctgag ctccaaagct actcggcaaa agagctcgca ctcattgtca actactactt 1140 gctcatctct aagctggact cggtcacatg ttttgacaat gtgctcacag ggggtgtgct 1200 caagaagctc tttaaaccca tcgtggcttg gtggtccacc ttcaaaggga agatcttcgg 1260 gaaggaggag ttcgaacaac ttatggaggc gcttgagtgg gtcgacgtgt cactgtccta 1320 caaagtggag acatacagcc aggccaaccc aaacaatcag cccaaggtga tgttcgggta 1380 cgagtggctc agcacagaaa cgggaacccc aggaacagag gaggacgccg ctcccgaaac 1440 cccacaagag gacgaggacc cacatgaaag atatatccag gccctccaaa cactgacgaa 1500 ggccctcgac caggagagtg ctccaccacc aacagaacca gcccagtgct ccagcaccag 1560 taatccacaa caggaggagc acttccgccc accccacaac ctccacactg atgaaacccc 1620 aagctgctca ggaagctcga attcctttgc ttgccactgc ccgtgcggca cggaactcaa 1680 agttttctca gccgagtttc cacccattcc cccactatcg cacggcgatc ggctcaagaa 1740 cagggaagca ttcttctttt cgagagatgg tactccctac agctacactg ggggttccca 1800 cgcatccaga ggatggccga ctttccttga ccagatcctg gccactgctg agttggtgag 1860 gcccctcccc cacttcaacc aatgcctcat ccaaaaatac caaagaggcg cctccatccc 1920 cttccacaga gacgacgagc catgctacga tgcggaccac caagtgctca caatcaacct 1980 caccggtgaa gcagaattca aaatcagctg caaagctggt tcagggagtt gcacgttagt 2040 agagaaccag ttccacctgt ccccccccgg tttccaaaag acacacaagc acagtgtggt 2100 ctcacttagc gcggggcgag tctccctcac attccgctcc actgtcaagc agagcgttac 2160 ctctgaagag ggtgactgtg tagaacccga caatctgccg tggaaggcct ggctcggaaa 2220 gctgagaaac ctgggcttca ggggcatgca gctgcaatac gatccaaatg gggccttgat 2280 ctcaccaatc gaaagcgtca agtcactccc gaagtgctcc ccggaaaagg tcgacccctc 2340 cctcctcaaa atgctagata atcaggctcg cgcaccaact ccattctcgc ccagccccat 2400 cagggcaaaa gcttactcct cagacgtcaa aaactctcga attggcgcat tactccgaca 2460 gcagggcaaa gattggggcc accgcttcga ttcacttgtg gagaatgggc agaggcagct 2520 agccatcagt gtgatccatg gggccggtgg ctctgggaaa tcgagggcgt tgcagatgta 2580 cctgaaggac aacccagatg ctgatgtcac gatagtgcta ccaactaacg agctgaggct 2640 cgactggctg aagaagttgc ccaccttccc ggcagaccag atcaaaacct tcgagaaggc 2700 cctgctggct cccacaaagc ccacagttat cttcgatgac tacggcaaac tgccagccgg 2760 gtacattgaa tccttctcat tctacatgtc atcagctgag cttctggtgc tcaccggtga 2820 ctccaagcag agcgtgcatc acgagtctaa tgagaatgcg atgagcagcc tcatcgaacc 2880 cttcactctg gaagctgata agtactcacg ctattacatc aatgccacac acagaaacaa 2940 gcgtgatttg gccaacaagc taggggtcta ctcagaggtc acggggataa catccatcac 3000 ccaaggcaac caccctgtgc cgggacttca cctgctcgtc ccctcactct acaagaagga 3060 ggctttcagc gaaatgggtc acaaggtttc cacttatgcg ggctgtcagg gcctcacagc 3120 cccacgcgtg caaattctgc tctcagaaga gactagcatg tgttcccgcg aagtcattta 3180 caccgccctc tcccgagccg ttcactccat tcactttgtc aactgcggcc caaacaatca 3240 ggctttctgg gccaagctgg agagcacacc ttacctgaaa gctttcctct ccacgctccg 3300 agaagacgcg gcacctgtcg tgaaaccgaa agaggaagca ccagctccag ttgatccccc 3360 aaagacccac atcccagttg actcagccat gccaatttat gaggacttac tggatcagat 3420 gcgggaaaag catgagaggg agatcttttc agaaaagcat gggcacagca attgcgtgca 3480 aacggaggat acctttgtgc aaatgttcag tcaccagcag gctaaggacg aaacccttct 3540 ctgggctacc atcgaggcga gactggtcat ttccaacccc aaggccaatt ggcaagaatt 3600 catggagaaa agaccgattg gagatgtgct ctttggtttc tacagagaag cgatggggct 3660 gcccactgaa cctattgcct ttgaaccaca gctttgggag tcttgcatcc atgaggtcca 3720 gcgtacctac ttggcaaagc ccatcaacat gctgaagaat ggacaggctc ggcaatcccc 3780 cgattatgat ccaaacatga tatctctctt tctgaagtcc cagtgggtga agaaaatgga 3840 gaagttgggc gccctaagga tcaagcccgg acaaactatt gcctccttcc accaggccac 3900 tgtcatgctg ttcggcacga tggctaggta catgaggaga atgcgggaaa tcttccagcc 3960 taagaacatt gccatcaact gcgagatgac cccagaagat ctcacagatt gggccgtggg 4020 ttctgccggc cagtggaaat tcgccggccc ttctttagcc aatgacttca cagcattcga 4080 tcagtcacaa gatggggcga tgcttcagtt tgaggtcctc aaagccaaac accacagcat 4140 tccagaggat gtcttggacg cttacctaca catcaaaaca aactcgaaga tcttcttggg 4200 tacattgacc attatgagac tcacgggtga gggccccact ttcgatgcaa acactgagtg 4260 caacatcgct ttcacccatg caaaatttca gattccaaag ggtacagccc agctttacgc 4320 gggggatgac tcggcaattg atggcaaccc cccagtgaga gagagcttca gattggttga 4380 gcagaaattg aagctgaggt caaaaccggc gatcgcgatg caggaaaaag gagactgggc 4440 agaattctgt ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaaacttca 4500 cgcgagtctg gtgcttgaaa agaagagagg taatttgaag aatgtgctga ggtcctatga 4560 gcttgacctg gcattggcat atcagcaccg ggatgaactt cacgaattac tctctgagga 4620 ggagctgcgt cttcactacg acacggttcg tacgctagtt aagtcaggtg gaggagaggt 4680 tttgaaaact tttctttcca aagatgaatc actttactaa cctcctcatt gaagagggtt 4740 acgtccggac gaacgaaatc ctctcagata ctctagtcgt ccatgctgta gctggcgctg 4800 gcaagtccac cctcatccgc aaattcatcc atcagcatcc acaggcccgt gcgtacaccc 4860 acggagtccc tgacccccca aatctcgaag gccgattcat tcaggctttt aagaaccctg 4920 acccaaacca cttcaacatc cttgacgagt attgcgcaga acctccaagc ggcagttgga 4980 acgtgctcat cgccgacccc ctgcaacata gatctcaagc tcttcgaccc cactacatca 5040 aaagagagtc ccacaggcta ggagtagcca cgtgtgaact tctcaccaga gtggggcttc 5100 cagttttgtc caacaagact gaggatcaag tcgattacca gggcattttc gaagggcccc 5160 ttttcggcac cgtgattgct ctggactcca ctgtcagagc cctcctcgta aagcacggaa 5220 ttccaccact ctgccctgct gaggtcctcg ggtctgagtt tgagcaaacg acagtagtct 5280 cggaggttcc gcttagccag gtcaagttca agcacgctct gtacatcgct ctcacccgcc 5340 acaagaagtc tctccatgtc cgggctcccc cactccctga caccccccgc cgattactct 5400 aagccagtgc ttgcagcagc agtaggagtt agtttagctt tagtaataaa ctctttcttg 5460 gtctataggc ttccctcgcc cggggacaat attcatcaac tgccctttgg aggttcctac 5520 cgggacggaa ctaagagcat ccactacaat tcgcctaggg cccagagtca gatctcaggt 5580 gcgtcaccgt tcctgataat cctgatactc tcagccctca tctatgccct atcttgtaga 5640 ggcggccatc accgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca 5700 tccttgcacc attctgctaa ctggacactc tgcgaccatt agcggaaact gtggacctgt 5760 cgcaccagag accatcaggg ctcttggaga ctacttaacc gggcttaggt tttagcatta 5820 gtttgattat cctatcgtca tcctagttga agtcatcatg tctacaccat ttcctcaagt 5880 cactcaggaa cagatgaacg ccttcactcc acataccaca tccaatctcc ttccatcacc 5940 ggagcagttg accaccattg ccaacctctt ggttgctgcc aaggtgcctg ccgcctcaac 6000 cacgaccatt gccctggagc ttgttaactt ctgttatgac aatggctcca gtacttacac 6060 agcggtggtg ggcccttctt cacttgcaga ggtctcactc tcccaggtcg ctaacatcgt 6120 caaagcctca ggcacctctc tccgcaaatt ctgcagattc tttgctccaa tcatctggaa 6180 cctcagaaca gacaagacgc ccccagccaa ctgggaagcc aatgggttca aaccgacaga 6240 gaagtttgca gccttcgatt tcttcgatgg agtggaaaat ccggcggcca tgcagccacc 6300 aggagggttg gttaggactc ccagccaagc agaaaggatc gccaacgcca ctaacaagca 6360 ggtaaacctc tttcaggccg cggcacagga taataacttc gccagcaact ctgcattcat 6420 caccaagggc caattgtcct ccaactcacc aaccattcaa tacctcccac cacctgagtg 6480 atttctccac ccagttcaag cccgttgttt tcgcaatttt gttggggcta tcgagttttc 6540 aaaattgctt ccgcttctgt agacctaaat tacagcctag tgtgcggttt aatacctatt 6600 tacgcac 6607 //