ID GQ179640; SV 3; linear; genomic RNA; STD; VRL; 7982 BP. XX AC GQ179640; XX DT 18-JUN-2009 (Rel. 101, Created) DT 31-AUG-2025 (Rel. 144, Last updated, Version 13) XX DE Salivirus NG-J1, complete genome. XX KW . XX OS salivirus A1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Kodimesavirinae; Salivirus; OC Salivirus aklasse; Salivirus A. XX RN [1] RP 1-7982 RX DOI; 10.1128/JVI.01241-09. RX PUBMED; 19759142. RA Li L., Victoria J., Kapoor A., Blinkova O., Wang C., Babrzadeh F., RA Mason C.J., Pandey P., Triki H., Bahri O., Oderinde B.S., Baba M.M., RA Bukbuk D.N., Besser J.M., Bartkus J.M., Delwart E.L.; RT "A novel picornavirus associated with gastroenteritis"; RL J. Virol. 83(22):12002-12006(2009). XX RN [2] RP 1-7982 RA Li L., Victori J., Kapoor A., Delwart E.; RT ; RL Submitted (20-MAY-2009) to the INSDC. RL Blood System Research Institute, 270 Masonic Ave, San Francisco, CA 94122, RL USA XX RN [3] RC Sequence update by submitter RP 1-7982 RA Li L., Victori J., Kapoor A., Delwart E.; RT ; RL Submitted (17-JUN-2009) to the INSDC. RL Blood System Research Institute, 270 Masonic Ave, San Francisco, CA 94122, RL USA XX RN [4] RC Sequence update by submitter RP 1-7982 RA Li L., Victori J., Kapoor A., Delwart E.; RT ; RL Submitted (09-JUL-2009) to the INSDC. RL Blood System Research Institute, 270 Masonic Ave, San Francisco, CA 94122, RL USA XX DR MD5; eed7fb1f35351a0529c5f28e9c0e5c29. XX CC On Jul 9, 2009 this sequence version replaced GQ179640.2. XX FH Key Location/Qualifiers FH FT source 1..7982 FT /organism="salivirus A1" FT /host="Homo sapiens" FT /strain="NG-J1" FT /mol_type="genomic RNA" FT /geo_loc_name="Nigeria" FT /isolation_source="stool sample from an acute paralysis FT patient" FT /collection_date="Apr-2007" FT /db_xref="taxon:2847280" FT CDS 710..7834 FT /codon_start=1 FT /product="polyprotein" FT /protein_id="ACS32214.2" FT /translation="MEGSNGFSSSLAGLSSSRSSLRLLTHFLSLPTLPVNIYLNARRHS FT GWYRSPPTLPVNIYLNEQFDNLCLAALRYPGHKLYPSVHTLFPDVSPLKIPHSVPAFAH FT LVQRQGLRRQGNSITNIYGNGNDVTTDVGANGMSLPIAVGDMPTASTSEAPLGSNKGGS FT STSPKSTSNGNVVRGSRYSKWWEPAAARALDRALDHAVDATDAVAGAASKGIKAGAAKL FT SNKLSGSQTTALLALPGNIAGGAPSATVNANNTSISSQALLPSVNPYPSTPAVSLPNPD FT APTQVGPAADRQWLVDTLSWSETIAPLTVFSGPKALTPGVYPPTIEPNTGVYPLPAALC FT VSHPESVFSTAYNAHAYFNCGFDVTVVVNASQFHGGSLIVLAMAEGLGDITPADSSTWF FT NFPHTIINLANSNAATLKLPYIGVTPNTSTEGLHNYWTILFAPLTPLAVPTGSPTTVKV FT SLFVSPIDSAFYGLRFPVPFPAPQHWKTRAVPGAGTYGSVVAGQEIPLVGYAPAAPPRD FT YLPGRVHNWLEYAARHSWERNLTWTSADEVGDQLVSYPIQPEALANTQTNTAFVLSLFS FT QWRGSLQISLIFTGPAQCYGRLLLAYTPPSANPPTTIDEANNGTYDVWDVNGDSTYTFT FT IPFCSQAYWKTVDIGTSSGLVSNNGYFTVFVMNPLVTPGPSPPSATVAAFLHVADDFDV FT RLPQCPALGFQSGADGAEVQPAPTSDLSDGNPTTDPAPRDNFDYPHHPVDPSTDLAFYF FT SQYRWFGLNESLTPLDATGGLFYHISLNPINFQQSSLLSVLGAFTYVYANLSLNINVSA FT PSQPCTFYVFYAPPGASVPSVQTLAELSFFTHTATPLNLAAPTNITVSIPYSSPQSVLC FT TSFGGFGLQNGGDAGNLHSNTWGTLILYVDLPQSDSVSVSAYISFRDFEAYVPRQTPGV FT GPVPTSTSIVRVARPTPKPRTARRQGGTLADLILSPESRCFIVAHTTAPFYSILLVNPD FT EEYAISMFSHGDESILQYSSRSGTRLTPTAPAFFLCAAASVDTVLPYSISQSHLWLTDL FT TGIPLRAVPPLTLFLSAGAALCAGAQTLIAVAQGGSTPETPPTPNRALLRRQGLGDLPD FT AAKGLSAALESVARVAGDANIATSSQAIATSINSLSNSIDGATSFMQNFFSGLAPRNPT FT SPLQHLFAKLIKWVTKIIGSLIIICNNPTPSALIGVSLMLCGDLAEDITEFFSNLGNPL FT AAVFYRCARALGLSPTPQSAAQAAGGRQGVRDYNDIMSALRNTDWFFEKIMTHIKNLLE FT WLGVLVKDDPRTKLNGQHEKILELYTDSVTASSTPPSELSADAIRSNLDLAKQLLTLSH FT AANSVTHIQLCTRAITNYSTALSAISLVGTPGTRPEPLVVYLYGPPGTGKSLLASLLAS FT TLAQALSGDPNNYYSPSSPDCKFYDGYSGQPVHYIDDIGQDPDGADWADFVNIVSSAPF FT IVPMADVNDKGRFYTSRVVIVTSNFPGPNPRSARCVAALERRLHIRLNVTARDGVAFSA FT AAALQPSNPPSATRYCKFANPLTQFSMFNLAVDYKSVVLPNTPLTCFDELVDFVLSSLR FT DRASVNSLLSGMVRTDVTRQGGNADAPAPSAAPLPSVIPSVPSQDPFTRAVNENRPVSF FT LSKIWSWRAPIFAASSFLSLIAATLTIVRCLRDLRSTQGAYSGTPVPKPRKKDLPKQPV FT YSGPVRRQGFDPAVMKIMGNVDSFVTLSGTKPIWTMSCLWIGGRNLIAPSHAFVSDEYE FT ITHIRVGSRTLDVSRVTRVDDGELSLLSVPDGPEHKSLIRYIRSASPKSGILASKFSDT FT PVFVSFWNGKSHSTPLPGVVDEKDSFTYRCSSFQGLCGSPMIATDPGGLGILGIHVAGV FT AGYNGFSARLTPERVQAFLSHLATPQSVLYFHPPMGPPAHVSRRSRLHPIPPAFGAFPI FT TKEPAALSRKDPRLPEGTDLDAITLAKHDKGDIATPWPCMEEAADWYFSQLPDNLPVLS FT QEDAIRGLDHMDAIDLSQSPGYPWTTQGRSRRSLFDEDGNPLPELQEAIDSVWDGGSYI FT YQSFLKDELRPTAKARAGKTRIVEAAPIQAIVVGRRLLGSLINHLQGNPLQHGSAVGCN FT PDIHWTQIFHSLTSFSNVWSIDYSCFDATIPSVLLSAIASRIAARSDQPGRVLDYLSYT FT TTSYHVYDSLWYTMIGGNPSGCVGTSILNTIANNIAVISAMMYCNKFDPRDPPVLYCYG FT DDLIWGSNQDFHPRELQAFYQKFTNFVVTPADKASDFPDSSSIFDITFLKRYFVPDDIH FT PHLIHPVMDEQTLTNSIMWLRGGEFEEVLRSLETLAFHSGPKNYSAWCEKIKAKIRENG FT CDATFTPYSVLQRGWVSTCMTGPYPLTG" FT mat_peptide 710..1051 FT /product="L" FT mat_peptide 1052..2152 FT /product="VP0" FT mat_peptide 2153..2824 FT /product="VP3" FT mat_peptide 2825..3652 FT /product="VP1" FT mat_peptide 3653..4009 FT /product="2A" FT mat_peptide 4010..4468 FT /product="2B" FT mat_peptide 4469..5506 FT /product="2C" FT mat_peptide 5507..5737 FT /product="3A" FT mat_peptide 5738..5824 FT /product="3B" FT mat_peptide 5825..6409 FT /product="3C" FT mat_peptide 6410..7831 FT /product="3D" XX SQ Sequence 7982 BP; 1426 A; 2873 C; 1652 G; 2031 T; 0 other; tatggcaggc gggcttgtgg acggcttcgg cccacccaca gcaagaatgc catcatctgt 60 cctcaccccc aattttccct tttcttcccc tgcaaccatt acgcttactc gcatgtgcat 120 tgagtggtgc atgtgttgaa caaacagcta cactcacatg ggggcgggtt ttcccgccct 180 acggcctctc gcgaggccca ccccttccct ccccttataa ctacagtgct ttggtaggta 240 agcatcctga tcccccgcgg aagctgctca cgtggcaact gtggggaccc agacaggtta 300 tcaaaggcac ccggtctttc cgccttcagg agtatcccta ctagtgaatt ctagcggggc 360 tctgcttggt gccaacctcc cccaaatgcg cgctgcggga gtgctcttcc ccaactcacc 420 ctagtatcct ctcatgtgtg tgcttggtca gcatatctga gacgatgttc cgctgtccca 480 gaccagtcca gtaatggacg ggccagtgcg tgtagtcgtc ttccggcttg tccggggcat 540 gtttggtgaa ccggtggggt aaggttggtg tgcccaacgc ccgtactttg gtgacacctc 600 aagaccaccc aggaatgcca gggaggtacc ccacctcacg gtgggatctg accctgggct 660 aattgtctac ggtggttctt cttgcttcca cttctttctt ctgttcacga tggagggctc 720 taacggattc tcgagttcgt tggctggcct ttcttcatcg cgctcttctc tacgcctcct 780 cactcatttt ctctccctcc ccaccttacc cgttaacatc tatctcaatg ctcgccgtca 840 ctccggctgg tatcgctccc cccccacctt acccgttaac atctatctca atgaacaatt 900 tgacaatctc tgcctggcgg ctttgcgcta tccgggccac aaattgtatc cctctgtcca 960 cactctgttc cctgatgttt cacccctcaa gattccccac tctgtccccg cctttgctca 1020 cctcgtccag cgacaggggc tgcggcggca aggaaactcc atcaccaaca tctacggcaa 1080 tggcaacgac gtcaccacag acgtcggcgc caatgggatg tccctcccca ttgccgtagg 1140 tgacatgcct accgcctcta cctctgaagc ccctcttggt tccaacaaag gtggctcttc 1200 cacttcccca aaatccacat ccaatggcaa cgtcgtccgc ggatcccgct actctaagtg 1260 gtgggaaccc gcggccgcac gcgccttgga tcgtgctctt gaccacgccg ttgacgcaac 1320 tgacgcagtt gctggcgccg cctccaaggg catcaaggct ggggccgcta agctttccaa 1380 caagctttct ggctctcaaa ccacagctct tcttgctctt cccggcaaca tcgccggtgg 1440 tgccccctct gcaacagtta atgccaacaa cacttccatc tcttcccaag ctcttttacc 1500 ctctgttaat ccttaccctt ccacccctgc tgtctcactc cccaatcccg acgctcccac 1560 tcaggttggc cccgccgccg accgccagtg gctcgtcgac accctctctt ggtctgagac 1620 gatcgcaccc cttactgtct tctctggacc caaggctctc acccctggcg tctacccccc 1680 cactattgaa cccaacactg gtgtctatcc tctaccagct gcactctgtg tttcccatcc 1740 tgaatctgtc ttttccactg cctacaatgc tcacgcctac ttcaactgtg gcttcgatgt 1800 cacagtcgtc gtgaacgctt cccagttcca cggcggctcg ctgatcgtct tggccatggc 1860 tgaaggtctg ggcgacatca ccccagctga ttcttccact tggttcaact tcccccatac 1920 aatcatcaat ctggctaact ctaatgctgc caccctcaaa cttccttaca ttggagtcac 1980 ccccaacacc tccactgaag gactccacaa ctactggacc attctctttg cccctctgac 2040 tcctcttgct gtcccgactg gctcacccac cactgtcaaa gtttccctct ttgtctcccc 2100 cattgactca gctttctatg gcctcaggtt ccccgtccct ttcccggcac cccagcactg 2160 gaaaacacgt gctgtccctg gtgctggcac ctacggctcg gtcgtggccg gccaggaaat 2220 ccccctggtc ggctatgccc ccgccgcccc tccccgcgat tacctccccg ggcgcgtgca 2280 caattggctc gagtacgctg cccgtcactc ctgggagagg aacttgacct ggacctccgc 2340 cgacgaagtc ggtgaccagc ttgtctccta tcccatccaa ccagaggctc tcgcaaatac 2400 ccaaaccaat acagcttttg ttctgtccct cttttcacag tggcgtggct ccctgcagat 2460 ctccctcatc ttcactggtc ctgcacaatg ctacggccgc cttcttcttg cttacactcc 2520 tccctccgcc aatcctccta ccaccatcga tgaggccaac aatggcacat acgatgtttg 2580 ggatgtgaat ggcgactcca cctacacttt caccataccc ttctgctcgc aggcctactg 2640 gaagactgtc gacatcggca cgtcctctgg tctggtctca aacaatgggt acttcactgt 2700 ctttgtcatg aaccctctcg tcactcctgg tccctctccc ccttctgcca ctgttgctgc 2760 attccttcat gtcgcggacg acttcgacgt tcgccttccc cagtgccccg cccttggttt 2820 ccaatcggga gccgatggtg cagaagtcca acctgccccc accagcgacc tctctgatgg 2880 taaccccacc accgaccctg cccctcgtga caactttgac tacccccacc accctgttga 2940 tccttccact gacctagctt tctacttttc tcagtaccgc tggtttggcc ttaatgaatc 3000 tctcacccca ttggacgcca ccggtggcct gttttaccac atctccctca accccatcaa 3060 cttccagcaa agctccctcc tcagtgttct aggtgcattc acctatgtgt atgccaacct 3120 ttctctcaac atcaatgtct ctgccccttc ccaaccctgc actttctacg tcttctatgc 3180 ccccccgggt gcatctgtcc cttctgtgca gactctcgca gaactctctt tcttcaccca 3240 cactgccact cctctcaacc tggcagcacc aaccaacatc actgtctcca tcccttactc 3300 ctccccccag tctgttctct gtacgtcctt tggaggtttc ggcctccaaa acggcggaga 3360 tgcaggtaac ctccactcca acacatgggg tactctcatc ctctatgttg atctccccca 3420 atctgacagt gtctctgttt ctgcttacat ctccttccgt gactttgaag cgtacgtccc 3480 ccgccagact cctggcgttg gccctgtgcc cacgagcacc tccatcgttc gtgtcgctcg 3540 gcccaccccc aaaccccgca cggctcgccg ccaaggcggc accctcgcgg acctcatcct 3600 ctcccccgaa agccgatgct tcattgtcgc ccacactact gcccccttct actccatcct 3660 tctggtcaac cccgacgagg agtatgccat cagcatgttc tctcatggcg acgagtcaat 3720 cctccagtac tcgtcgcgct ctggcactcg cctcaccccc actgccccag ccttcttcct 3780 ctgtgctgct gcatctgttg acacagtcct cccctactcc atctctcaat cacacctttg 3840 gcttaccgat ctgactggca ttcctctccg cgcagtcccc ccccttactc tcttcctctc 3900 cgcgggagcc gccctgtgtg ccggcgcaca aacgctgata gccgtcgcac agggtggttc 3960 taccccggaa accccaccca ctcccaaccg cgctctcctc cgtcgtcagg gccttggcga 4020 tctcccggat gcggcgaaag gactttccgc cgcgctcgag agtgttgcca gggtcgctgg 4080 cgatgccaac attgccacct cctcccaagc cattgctacc tccattaact ctctttccaa 4140 ctccattgat ggtgctactt ctttcatgca aaactttttc tctggcctcg ctccaagaaa 4200 ccccacctcc cccctccagc acctctttgc caagctcatc aaatgggtga ccaaaatcat 4260 tggctcactc atcatcatct gtaacaaccc caccccctca gcactgattg gtgtttctct 4320 catgctctgc ggtgacctcg ctgaggacat cacggagttc ttctccaacc ttggaaaccc 4380 cctcgctgct gtcttctacc gctgtgctag ggctcttggt ctctccccca cccctcaatc 4440 tgctgcccag gccgccggtg gacgccaggg cgttcgtgat tacaacgaca tcatgagcgc 4500 tctgcggaac accgactggt tcttcgagaa gatcatgact cacatcaaga atcttctcga 4560 gtggcttggg gtcctcgtca aagatgaccc caggaccaag ctcaacggcc agcatgagaa 4620 gatcctggaa ctctacactg attctgttac tgcttcttca acccccccct ctgagctttc 4680 tgcagacgcc atccggtcta atctggattt ggccaagcaa cttctcactc tctcccacgc 4740 tgctaactct gtcactcaca tccaactgtg cacgcgcgct attactaatt actccacagc 4800 tctctccgcc atctccctcg ttggcacgcc cggcacgcga ccagagccac tggttgtgta 4860 cctgtacggg cctcccggga ctggcaaatc cctccttgcc tctcttcttg catccaccct 4920 tgctcaggct ctctctggtg atcctaacaa ttattactca ccctcctccc ctgactgcaa 4980 attctacgat ggttactctg gccagcccgt ccactacatc gacgacatcg ggcaagaccc 5040 cgatggcgct gattgggctg actttgtgaa catcgtttcc tctgccccct tcattgtccc 5100 catggccgac gttaatgaca agggacggtt ttacacctcc cgtgtcgtca tcgtcacctc 5160 aaacttcccc ggccctaacc cccgctccgc ccgctgtgtg gccgcgctgg aacgccgcct 5220 gcacattcgc ctgaatgtga cggcacgtga cggtgtggcc ttctcagcgg cggctgctct 5280 ccaaccctcc aacccccctt ctgcaactcg ctattgcaaa tttgctaacc ctctcactca 5340 gttttctatg tttaatctgg ctgtcgatta caaatcagtt gtccttccca acacccctct 5400 cacctgcttt gatgaactgg ttgactttgt tctgagctcc cttcgcgacc gggcttcggt 5460 gaactcgctc ctctctggca tggtgcgcac tgacgtcaca cgccaaggtg ggaacgctga 5520 tgcccccgct ccttctgcag ctcctctccc ctctgttatc ccatctgtcc catcccagga 5580 ccccttcacc cgtgcggtta acgagaaccg ccctgtctct ttcctctcca agatctggtc 5640 gtggcgagct cccatcttcg ccgcctcctc tttcctttct ctcatcgctg caactctcac 5700 cattgtccgt tgtctccgtg acctgcggtc cactcagggt gcatacagtg ggactcctgt 5760 tccgaaacca cggaaaaagg atctcccaaa acaacctgtg tactctgggc ctgtccgccg 5820 gcagggtttc gaccccgccg tcatgaagat catgggcaat gtggactctt ttgtcaccct 5880 ctcgggtact aaacccatct ggactatgtc ctgcctctgg attggcggtc gcaatctgat 5940 tgctccttcc cacgcattcg tctccgacga gtacgagatc acccacatcc gcgttggatc 6000 gcgcacgctt gacgtgtcgc gtgttacgcg ggtggatgac ggtgagctgt ctctactctc 6060 ggtgccggat gggccggagc ataagagctt gatccgctac atccgatctg cttcccccaa 6120 atctggtata ctagcctcca aattctctga cactcctgtc tttgtttctt tctggaatgg 6180 caagtcccac tccacccccc tccccggggt cgtggacgag aaagactcgt tcacgtaccg 6240 ctgctcatct ttccaaggct tgtgcggttc gccgatgatt gccactgatc ctggcggctt 6300 gggtatcctc ggtatccacg tcgctggggt ggctggctac aacggcttct ccgcacgcct 6360 cacccccgag cgtgtccaag ctttcctttc ccacctggct acaccccaat ctgtcctcta 6420 ctttcaccca cccatgggcc cgcctgcgca cgtctctcgt cgcagccggc tccatcccat 6480 ccctcccgcc tttggtgctt tccccatcac caaagaacca gcagcccttt ctaggaagga 6540 ccctcgcctc cccgagggca ccgacctgga tgccatcacc ctcgccaagc acgacaaggg 6600 cgacatcgcg acgccctggc cttgcatgga ggaggcggct gactggtact tctcccagct 6660 tcctgataac ctccctgtcc tctcccagga agatgccatt cgtggtctcg accacatgga 6720 tgccatcgac ctctcccaat ctcctggcta cccttggacg acacagggcc ggtcccgccg 6780 gtccctgttc gacgaggatg gcaaccctct ccctgagctc caggaagcca tcgattccgt 6840 ctgggacggt ggctcctaca tctatcaatc tttcctcaag gatgagttgc gccccacggc 6900 aaaagccaga gctggaaaaa cccggattgt ggaggcggct ccgatacaag caattgtagt 6960 tggacgtcgc ctccttggtt ctctcatcaa ccacctccag ggtaaccctc tccagcatgg 7020 cagtgccgtt gggtgcaatc ctgacatcca ctggactcaa atcttccact cactcacctc 7080 tttctctaat gtctggtcta ttgattactc ttgctttgat gccactatcc cctctgtcct 7140 tctctctgca atcgcctccc gcattgctgc acgctctgac caacctggtc gtgttctgga 7200 ctatctctct tacaccacta cctcctacca tgtctatgac tccctgtggt acaccatgat 7260 cggtggcaat ccctccgggt gtgttgggac ctccatcctc aacacaattg caaacaacat 7320 cgcggtcatc tccgcgatga tgtattgcaa caaatttgac ccgcgggacc ctccggtctt 7380 gtactgctac ggggacgact tgatatgggg ctccaatcaa gactttcacc ctcgtgaact 7440 ccaggctttc tatcagaaat tcaccaactt tgttgtcact cctgctgaca aggcttctga 7500 ctttcctgac tcttcttcca tctttgacat cactttcctt aaacgctatt ttgtccctga 7560 tgatatccac ccccacctca tccatcctgt gatggatgag caaaccctca ccaactcaat 7620 catgtggttg cgtggcgggg agtttgagga ggtgttgcgg tcactcgaga ctcttgcctt 7680 tcactccgga ccgaagaact actcggcttg gtgtgagaaa atcaaggcta agattcgaga 7740 gaacggctgt gacgccactt tcactcccta ctccgtcctc caacgtggtt gggtttccac 7800 ctgcatgact ggaccctacc ccctcaccgg gtagccccct ccccgaaacc ctcgtcccag 7860 gtccagtttt accccttctc tctccctctg ccctgcatgg tgatataaag accctttgtg 7920 gaccctaagc catgtagttg ctgctccctc tttcctgttg tgaatattgg tttctgtttc 7980 at 7982 //