ID   GQ169505; SV 1; circular; genomic DNA; STD; VRL; 2714 BP.
XX
AC   GQ169505;
XX
DT   01-JUN-2011 (Rel. 109, Created)
DT   29-AUG-2012 (Rel. 113, Last updated, Version 2)
XX
DE   African cassava mosaic virus clone ACMV-[PK;Mul;Dar;06] segment DNA-A,
DE   complete sequence.
XX
KW   .
XX
OS   African cassava mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-2714
RX   PUBMED; 22899988.
RA   Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.;
RT   "A melting pot of old world begomoviruses and their satellites infecting a
RT   collection of gossypium species in pakistan";
RL   PLoS One 7(8):E40050-E40050(2012).
XX
RN   [2]
RP   1-2714
RA   Nawaz-ul-Rehaman M., Briddon R., Fauquet C.;
RT   ;
RL   Submitted (18-MAY-2009) to the INSDC.
RL   ILTAB, Danforth Plant Science Center, 975 N Warson Rd., St. Louis, MO
RL   63132, USA
XX
DR   MD5; 8849076317012fa8c4dc3373d6c7efd6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2714
FT                   /organism="African cassava mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Gossypium darwinii"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan"
FT                   /collection_date="Nov-2006"
FT                   /identified_by="Nawaz-ul-Rehman"
FT                   /clone="ACMV-[PK;Mul;Dar;06]"
FT                   /db_xref="taxon:10817"
FT   gene            complement(1002..1406)
FT                   /gene="AC2"
FT   CDS             complement(1002..1406)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activation protein"
FT                   /db_xref="GOA:F6J0H0"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:F6J0H0"
FT                   /protein_id="ADD70322.1"
FT                   /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI
FT                   ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH
FT                   VIRAADHVLFNVIEKTIACQLTHEIQFNVY"
FT   gene            complement(1147..1554)
FT                   /gene="AC3"
FT   CDS             complement(1147..1554)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="REn"
FT                   /db_xref="GOA:F6J0W5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:F6J0W5"
FT                   /protein_id="ADD70321.1"
FT                   /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI
FT                   NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ
FT                   PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL"
FT   gene            complement(1463..2539)
FT                   /gene="AC1"
FT   CDS             complement(1463..2539)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:F6J0H2"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:F6J0H2"
FT                   /protein_id="ADD70319.1"
FT                   /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI
FT                   CRELHQNGEPHLHALIQFEGKITITNNRLFDCLHPSCSTSFHPNIQGAKSSSDVKSYLD
FT                   KDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN
FT                   LNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVIEGDS
FT                   RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGSQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY
FT                   SGSNQSQSQTIQEASHPA"
FT   gene            complement(2083..2505)
FT                   /gene="AC4"
FT   CDS             complement(2083..2505)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:F6J0H3"
FT                   /protein_id="ADD70320.1"
FT                   /translation="MSFSHTQSVLSPKNTCCHSFKHSLSHLTLSSLKSVESCIRMGNLT
FT                   CMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSHTWIRTATPSNGDNF
FT                   RSMDDLLEAVNSPQMMLTPKRLTAAVSQKLLMSLGN"
XX
SQ   Sequence 2714 BP; 695 A; 585 C; 666 G; 768 T; 0 other;
     accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg tcggccaatc        60
     atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt       120
     cgttgctagt gcgcaatgtg ggatcctctg gagaataact gtccggatgc ggtgttgggg       180
     cttacgtgga tgcttgtgat tcctgagtta aatggctatc aggatacatt tcagcccagt       240
     actctgggcc aaaatctggt tagagagcct ggggtgcctt cagggctaga tatctgcctt       300
     tcttctccag gctaaaccgg tcgtgcaagg ttgaacttcg aatcggcata cacgaaccga       360
     gatgctgctt gcatagtgcg cgctcctcct ctaccacgct cattgactag ctgccctctg       420
     tacataaagt gcatgatgta caggatgctc actcagagct cccctacctc tatccaccgg       480
     tcatgagaaa cattgaatag tatttgtgag tcaactgcca cgcaatgctt tgacagtaca       540
     atggacgcga tatgatcgtt agttctaagt acatgattta ttagtggtgg ccactatata       600
     ctgcaggcga agtcgtgcta gtgcgcaatg tgggatccac tggtgaatga gtttcctgac       660
     tcggtgcatg ggcttaggtg tatgcttgca attaaatatt tgcaggctta gaggatacat       720
     acgagcccag tactctgggc cacgatctgg ttagagattt agtctcagtt atcagggctc       780
     gtaattatgt cgaagcgacc aggagatatc atcatttcca ctccaggctc caaggttcgt       840
     cgaaggctga acttcgacag cccatacagg aaccgtgcta ctgcccccac tgtccacgtc       900
     acaaatcgaa aacgggcctg gatgaacagg cccatgtaca gaaagcccat gatgtacagg       960
     atgtatagat aagagctccc cgggctcgag ggtaccggca attaataaac attgaattgt      1020
     atttcatgag tcaactgaca cgcaatagtt ttttcaatta cattgaacaa aacatgatca      1080
     gcagctctaa ttacatggtt aattgagata acacctatat tatccaagta tttaagtact      1140
     tggtatctaa agacccttaa gaaaagacca gtctgaggct gtaaggtcgt ccagatcctg      1200
     aagttgagaa aacatttgtg aatccccagc tccttccgca ggttgtgatt gaatcgaacc      1260
     tggactgtta tgatgtcctg gttcagcagg aatggtcgtt gttggtgcct ggttattgtg      1320
     aaatacaggg gattgtttat ttcccaggta tacacgccat tcattgcttg aggagcagtg      1380
     atgagttccc ctgtgcgtaa atccatgatt ggagcagttg atatggaggt aatatgaaca      1440
     gccacagaca agatccactc tcctacgccg gatggctcgc ttcttgaatt gtctgtgact      1500
     gactttgatt ggaacctgag tagagtggtt ctgtgagggt gatgaagatt gcattcttta      1560
     atgcccaggc ctttagcgct tcttgctttt cctcgtctag gaactcttta taggacgagg      1620
     ttggtcctgg attgcagagg aagatagtgg gaatgccacc tttaatttga acgggtttcc      1680
     cgtattttgt gttggactgc cagtcccgct gggaccccat gaattcctta aagtgcttta      1740
     ggtagtgtgg atcgacgtca tcaatgacgt tgtaccaagc agcattattg aagacctttg      1800
     gactaaggtc caggtgtcca cacaggtaat tgtgtgggcc taaagatctg gcccatatcg      1860
     tcttccctgt tctgctatca ccttctatga caatactatt gggtctccat ggccgcgcag      1920
     cggaagccct aacattatca gcgacccatt cttcaagttc atcaggaact tggtcaaagg      1980
     aagaacatgg gaagggagaa atataaggag ctggtggctc ctggaaaatc ctttctaaat      2040
     tactatttag attatgaaac tgaagtacaa agtcctttgg gactaattcc ctaatgacat      2100
     taagagcttc tgacttactg ccgctgttaa gcgctttggc gtaagcatca tttgcggact      2160
     gttgaccgcc tctagcagat cgtccatcga tctgaaattg tccccattcg acggtgtcgc      2220
     cgtccttatc caggtatgac ttgacatctg agcttgattt ggcaccttga atgttggggt      2280
     ggaaactggt gctacagctt gggtgtagac aatcgaagag acgattgttc gtaatcgtga      2340
     ttttgccctc gaattggatg agggcatgca agtgaggttc cccattctga tgcagctctc      2400
     tacagatttt aatgaactta gggttagatg ggagagagag tgtttgaatg aatgacagca      2460
     ggtgttcttt ggggatagaa cactttgggt atgtgagaaa gacattcttg gcttgaactc      2520
     taaaacgagg agtcctcatt ttgaccaagt caattggaga cactcaacta gagacactct      2580
     tgagcatctc ctcctgttaa ttggagacat tatataggtg tctctaaatg gcattcttgt      2640
     aataagttaa actttaattt gaatgaaaag cctcaaaagg cgcataacac ccaaggggcc      2700
     aaccgtataa tatt                                                        2714
//