ID   FR856896; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC   FR856896;
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DT   31-MAY-2011 (Rel. 109, Created)
DT   31-MAY-2011 (Rel. 109, Last updated, Version 1)
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DE   Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate
DE   Q1294.A.s.cl1
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
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RN   [1]
RP   1-672
RA   Yahiaoui D.;
RT   ;
RL   Submitted (03-MAY-2011) to the INSDC.
RL   Yahiaoui D., Integrated Pest Management, Istituto Agronomico Mediterraneo
RL   Di Bari, Via Ceglie, 9, 70010, ITALY.
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RN   [2]
RA   Yahiaoui D., Djelouah K., D'Onghia A., Addante R.;
RT   "Monitoring of Citrus tristeza virus (CTV) air borne vectors and assessment
RT   of genetic variation of a local CTV RNA population through experimental
RT   aphid transmissions";
RL   Unpublished.
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DR   MD5; 8bdbc954de0db6cb4b11f83da9daed1d.
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FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /isolate="Q1294.A.s.cl1"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy:Apulia"
FT                   /isolation_source="sub-isolate after transmission by Aphis
FT                   spiraecola"
FT                   /identified_by="Yahiaoui Dorsaf"
FT                   /clone="1"
FT                   /PCR_primers="fwd_name: T36CP/FW, fwd_seq:
FT                   atggacgacgaaacaaagaaattg, rev_name: T36CP/RV, rev_seq:
FT                   tcaacgtgtgttgaatttccca"
FT                   /db_xref="taxon:12162"
FT   CDS             1..672
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:F6IQ72"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:F6IQ72"
FT                   /protein_id="CCB63190.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNNV
FT                   RQLSTQRNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSSQSDDDTTGIT
FT                   YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVANVTQPVKFNT
FT                   R"
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SQ   Sequence 672 BP; 196 A; 125 C; 169 G; 182 T; 0 other;
     atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga aggcgacgat        60
     gttgttgctg ctgagtcttc tttcggttcc gtaaacttac acatcgatcc gactctgata       120
     acgatgaaca atgtgcgtca gttgagtact caacggaatg ctgctttgaa cagggactta       180
     tttcttgctc tgaaagggaa gtatcctaac ttgcctgaca aagataagga ctttcacata       240
     gctatgatgt tataccgttt agcggttaag agttcatcat cgcaaagtga tgatgacacc       300
     acgggcataa cgtacactcg ggagggtgtt gaagtagatt tgtctgacaa actttggacc       360
     gacatcgtgt ataattctaa gggtattggt aaccgaacta acgcccttcg agtctggggt       420
     agaactaacg atgctcttta cttagccttt tgtagacaga accgcaattt gagttatggc       480
     ggacgtccgc tagatgcagg gattccggct gggtatcatt atttgtgtgc agatttcttg       540
     accggagctg gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg       600
     ttgaaaaagc gaggggctga tgaggttgta gttgctaatg tcacgcagcc tgtgaaattc       660
     aacacacgtt ga                                                           672
//