ID FR854197; SV 1; linear; genomic RNA; STD; VRL; 3898 BP. XX AC FR854197; XX DT 25-JUL-2011 (Rel. 109, Created) DT 08-SEP-2011 (Rel. 110, Last updated, Version 2) XX DE Tobacco rattle virus-SYM segment RNA2, genomic RNA XX KW complete viral segment. XX OS Tobacco rattle virus-SYM OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3898 RA MacFarlane S.A.; RT ; RL Submitted (25-APR-2011) to the INSDC. RL MacFarlane S.A., James Hutton Institute, Plant Pathology, Invergowrie, RL Dundee, DD2 5DA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1016/j.virusres.2011.07.007. RX PUBMED; 21798296. RA Ashfaq M., McGavin W., Macfarlane S.A.; RT "RNA2 of TRV SYM breaks the rules for tobravirus genome structure"; RL Virus Res. 160(1-2):435-438(2011). XX DR MD5; 51d2d41b9214e385a65ad8bdd9a071cb. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3898 FT /organism="Tobacco rattle virus-SYM" FT /segment="RNA2" FT /host="Spinacia oleracea" FT /strain="SYM" FT /mol_type="genomic RNA" FT /country="United Kingdom:South of England" FT /db_xref="taxon:12298" FT CDS 539..715 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:G0LXX1" FT /protein_id="CCA89311.1" FT /translation="MLFSSDIGTLLPVVFKIMNGVVSSAMPTVFLVENEDSDEHVEVRI FT ETFNCQRRLLFRL" FT CDS 819..1634 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:G0LXX2" FT /protein_id="CCA89312.1" FT /translation="MKLNYGLRHLEVGVESAGYSISSKVNSMFSFLFELPDSIYRKSFG FT SGGVEFYAGHLDMDLQRRDLSGKTLTSDSIFEYVVNREFSEGLMDEHNNEVGKVQMQSI FT RHGDFLNVKFDWSGTASVAALKVSCTSFSAKFSDDLSNLIPSKAASSAVIARTKHGAQA FT FEVGAKYSVGEGTLLFTHKHFVVQNDETWMSLDLPMIKSDGSVFGGTVSVIYYMAESPS FT IVADCAQSEVSKCYLERMGRRRSLLTLMRLLGIQRNSAVSFSLLSSVRL" FT CDS 1520..2074 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:G0LXX3" FT /protein_id="CCA89313.1" FT /translation="MLFGKDGSKTESSDTYEVTWDSAKFGGVVFSPVFGTSVIETVANK FT VKFKSNFLHSGNYTDTFLMFVAEHIVTVEHIAMYLDKRYDKRLLGYADEVFFGGAYTLS FT DVHFGNVSLQFQGDRIIVWNGGNCELELNDGEFMWIVGRTGSYLFGDWNWPSKIQHGKL FT GVKFTPRGSSFIDNGRVSAYF" FT CDS 2232..2879 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:G0LXX4" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:G0LXX4" FT /protein_id="CCA89314.1" FT /translation="MSDEMYDDAFDKSNGPAELMDDSWVESKAWKDLLKKLHSVKFALQ FT SGRDEITGLLTELNRQCPYSPFEQFPEKKVYFVLDSRANNALGVIQNASAFKRRADEKN FT AVAGVTNIPANPSTTTTTSQGSTTTTKPNTGSSLEEDLYTYYKFDDASTAFHKSVTALE FT NMQLKSYYRRNFEKEFGVKFGGDKKDKKPDEGKKPDEGKKPDTGGAPVPNKQ" FT CDS 3013..3423 FT /gene="2b" FT /product="nematode transmission protein" FT /note="deleted for C-terminal half of gene" FT /db_xref="UniProtKB/TrEMBL:G0LXX5" FT /protein_id="CCA89315.1" FT /translation="MSLVAFKIIPGEMVVIEEQYKRWQLDPNFFLTDDARLVRFDDYRN FT RPIIGVADAVESIDWVKLNKLEGMYGGSLKIFLTFLKHRRLAINVDGNAYSYFGKVWFY FT YGKVKLVEIWTAPHIDEEVDVCPKTLNYGSFA" XX SQ Sequence 3898 BP; 1058 A; 655 C; 953 G; 1232 T; 0 other; ataaaacatt gcaccttggt ggtgccctgg ttggggtatg tcggtgatcg cagtagaatg 60 tactaatcga cgagttggag aacgcagtag aatgtactta tccaacacaa cctttatcct 120 cctccctgac ggagtttttg tcagaatgtc agtttgtttg aactatccgg cttagtaccg 180 tacgggaaag tgaccggtgt gcttatctct aaactgatgt tgttggactt tagtatagct 240 tagttagtaa taaacgcttg tcttctcata caaggaaaac ctgagacgtg ttaactacga 300 aagtgtccat ttaaaatagt aatttcagtt ggactttttg tccaattgcg atgaaagaac 360 aaaaacgagt gactggtgtt tcacttgtca catcgcaacg gcacttgtgc tgtggggttc 420 gccagcatct ttagagaagc tggataaggt tctggtaaga tttacgagaa ttagcataat 480 tatactgatt gtgcttttgt ttcgaggttg agagaaacgg tcgatcgact gattaacgat 540 gttgttcagt tctgatatcg gtactctctt acctgtggtg tttaagatta tgaatggagt 600 tgtcagttcg gctatgccta ctgttttctt agttgagaac gaggacagcg atgaacacgt 660 tgaagtgaga atcgaaacct tcaactgtca acgtcgactt ttatttagac tataaggagg 720 ttgtgagtgt agagcgattt tcttggcgta agttaagtaa tttggctcat tctatacctc 780 ctaagtttaa atctgaagga ttgactgacg acattgatat gaaactgaat tatgggttaa 840 gacatttgga agtgggagtt gaatccgctg gttattcgat ctcttcgaaa gtgaactcaa 900 tgttctcttt cttgtttgaa ctaccagact cgatctaccg gaaaagtttt gggagtggtg 960 gagttgaatt ttatgcgggg catctagaca tggatctaca acgtcgtgac ctttcgggga 1020 aaactttaac atctgattcg attttcgagt acgtcgttaa cagggaattc tcagaaggtt 1080 tgatggatga acataataac gaagttggaa aggtgcaaat gcagtctatt agacatggtg 1140 actttcttaa cgttaagttc gactggtcgg gtacggctag tgttgctgct ctgaaggtta 1200 gttgcacaag tttttcagcg aaattttcgg atgacttgag taatttaata ccttcgaaag 1260 cggcatcctc agctgtcatt gctaggacta aacatggtgc gcaggcattt gaagttggag 1320 ctaagtacag tgttggtgag ggaacactgc tgttcacaca caaacacttt gtcgttcaaa 1380 atgacgaaac ctggatgtct cttgaccttc ctatgatcaa gtctgacggt tcggtgtttg 1440 gcggtactgt cagtgttatc tattatatgg ctgagtcacc ttcaatcgtt gctgattgtg 1500 ctcaatctga agtgtcgaaa tgttatttgg aaaggatggg tcgaagacgg agtcttctga 1560 cacttatgag gttacttggg attcagcgaa attcggcggt gtcgttttct ctcctgtctt 1620 cggtacgtct gtgattgaaa cagttgctaa caaagttaag tttaagtcaa acttcctcca 1680 ctcaggaaac tatactgata cttttcttat gttcgtggct gaacatatcg tgactgtgga 1740 acatatcgca atgtatttag acaagaggta cgacaagcga ctcttaggtt acgctgacga 1800 ggttttcttt ggtggtgctt atactctctc cgatgtacat tttggcaatg tgagcctaca 1860 atttcaaggg gataggatca tagtttggaa tggaggtaat tgcgagttag agcttaatga 1920 tggtgagttt atgtggattg ttggtaggac tggaagttat cttttcggcg attggaattg 1980 gccgagtaaa attcaacatg gaaaattggg agtaaaattt actcctcgcg gttcttcatt 2040 tattgataat gggcgggtct ccgcctattt ttgagagaag tggttggacc actaagtcac 2100 acacatgagt gtgtgaaggg cataatatac tgttgtgctc tcgttgactg aggcagttaa 2160 aaactttgtc attatctgga aattccaact tgctgataca caggttgctt aatcacttgc 2220 gtggaataac tatgtctgat gaaatgtacg acgacgcttt tgacaaatcc aatggaccag 2280 ctgagctgat ggacgactct tgggtcgaat ctaaggcttg gaaagacctt ttgaagaagt 2340 tacatagcgt taagtttgca ttgcaatcag gtcgtgatga aattactggg ttgttgacag 2400 aactgaatcg tcaatgtccg tactctcctt tcgaacagtt tcctgagaaa aaggtgtatt 2460 ttgttttaga ctctcgagct aacaatgctc tgggagttat tcaaaatgcg tctgctttta 2520 agaggagggc tgatgaaaag aacgctgttg caggtgtgac caacatcccg gctaatccta 2580 gtactactac tactacttcg cagggtagta caaccacaac taaacctaac actggttcgt 2640 ctctggagga agatctgtac acttactaca agttcgatga cgcttcaaca gctttccata 2700 agtctgttac agcattggaa aacatgcagc ttaagagtta ctacagaagg aacttcgaga 2760 aagaatttgg agttaaattt ggtggggata agaaggacaa gaaaccggat gaaggaaaga 2820 aaccggatga agggaagaag ccggacactg gaggagctcc agtgcctaac aaacagtaat 2880 tctgatgcga aatctgtaga ctcatctcat gagtggtggt ggataccata atccataacg 2940 ttgtaggaag cgtttaaaat aattcctctc gtaggcctat cacataggcg gtggcagtta 3000 ccataaactg taatgtcgtt ggttgcattt aaaataattc caggagaaat ggttgtgatc 3060 gaggaacagt ataaaagatg gcaattggat ccaaacttct ttctaactga cgacgccaga 3120 ttggtacgat tcgatgatta tcggaacaga ccaattattg gtgtcgctga cgctgtcgaa 3180 agcatagatt gggtcaagtt gaacaaactc gaaggtatgt atggcggaag cttgaaaatt 3240 ttcttgacgt ttctgaaaca tcgtagactc gcgatcaatg tcgatgggaa tgcttattcg 3300 tacttcggaa aagtgtggtt ttactatggg aaggtgaagt tggtcgaaat ttggaccgct 3360 ccacatattg atgaagaagt cgatgtgtgt ccgaagacat taaactacgg ttcatttgct 3420 tgaatcgttt ctgaagtttt aggttcaatt taaacctatt ggattggtat tccaaactgg 3480 cattgacttg tcggtaaact ggttgtttcc tatgagtgac tttgtgtcat tcatcgtctg 3540 aggacgttgg attacggacc gttaaattgg ttcgtttaga atttattttc attgtaaagt 3600 ttaaaagttg tggttttctt ttattctgag tttttaaaat tgattttata ttgtattgtt 3660 atctgtttct gtgtatagac tgtttgagat cggcgtttgg tcgactcatt gtcttaccat 3720 agggaaacgg actttgtttg tgttgttatt ttgtttgtat ttgtttaaaa ttctcaatga 3780 tctgaaaagg ctttattgcc aagagattat tggggggtga gtaagtactt ttaaagtgat 3840 gatggttaca aaggcaaaag gggtgagacc cctcgcctac gtaagcgtta ttacgccc 3898 //