ID FR851462; SV 1; linear; genomic RNA; STD; VRL; 6360 BP. XX AC FR851462; XX DT 21-APR-2011 (Rel. 108, Created) DT 21-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Cherry leaf roll virus RNA2 complete segment, isolate E395, genomic RNA XX KW complete viral segment, complete genome. XX OS Cherry leaf roll virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-6360 RA von Bargen S.; RT ; RL Submitted (11-APR-2011) to the INSDC. RL von Bargen S., Phytomedicine, Humboldt-Universitaet zu Berlin, Lentzeallee RL 55/57, Berlin, 14195, GERMANY. XX RN [2] RA von Bargen S., Langer J., Robel J., Rumbou A., Buettner C.; RT "Complete nucleotide sequence of Cherry leaf roll virus (CLRV), a subgroup RT C nepovirus"; RL Unpublished. XX DR MD5; 69f46827ac2a6b2508524188eb8c6135. DR EuropePMC; PMC3314827; 22218961. XX CC related sequence FR851461. XX FH Key Location/Qualifiers FH FT source 1..6360 FT /organism="Cherry leaf roll virus" FT /segment="RNA2" FT /host="Rheum sp." FT /isolate="E395" FT /mol_type="genomic RNA" FT /country="Germany:Bornheim" FT /collected_by="Joachim Hamacher" FT /collection_date="1987" FT /db_xref="taxon:12615" FT CDS 12..4781 FT /gene="P2" FT /product="polyprotein 2" FT /db_xref="GOA:F4NCE3" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F4NCE3" FT /protein_id="CCA64539.1" FT /translation="MVKPVVFSNGESVLPKALISEAREVAAFLKSTRNPAGFWVTFVAQ FT GTSLSVSQVALCAINGIVCRQSVESHSNGPSAVAFWSALRARLRSFLKGHGRWVTSLLA FT KTTEAFEAQDLCRYQRQRTAYLARGAVLRAKALRKRKTALRKERAAQLAQRQLEGERRA FT AARLVRETRKGLQILRCKLAALFSPPPPFPTTEWAWESLPSSPLPTYWEFFSDATSVAR FT TPSRGATLLSALPEGVDSFLPSSFPRRMTLQSAQTTKGSFGLVLRRMILKAVAAQRSFL FT AAFYNYFFKREDVIAEEKSSISEVPAEDDPYAGFDHWGAYSAFLSSVLPFPTLRVGKFH FT SAGNYQYCARASTCAEMDMHLHSLFEECKECRMGAGPPSQGFSPLFREPLNRGRLFLAA FT LPERLVLPDLQMHLHSFFDECTCYAGHVADTLNYRVPSTRDCAVVAKRTGVAIKHVHAL FT LSCWDRILEIPSVRPPLFERGWRKSVKSICTAHALWAQSQVSSCEPMDMDVHSLFCECA FT ECEINSSHPPLGSKSISLSGPPTLFSSRPRYSLPKYAGNSLVYTPDKCVHCKNEAELPV FT SVAEREAYLTITGKYGVCLCGGPRIVKTLQPSSVYTYAKRCGWKFLNPVRYHYATYEED FT YLCFMRALDALQASFVIEQPRSKIEIRGLLRYVVRAPAPPIEDEDLFLDAPSYLPAQSG FT IGANVQTLHQREPSGTEQTPFQGASRPLGASDGAVATQAPFRQEARQRWLGRRAHDLES FT QEDRIRKIADSQGISYASARAAYGAPDEAVPSQAPILPRLDEAYTRDSVVPRFLLGRTA FT STRAQRTVDVVLASPSVDKENHTATFYFNPVSQQEIDRMKSSGNTMVSIDAVEIAIDPV FT GMPGDDTDLTVLVMWCQNTDPQRAILGALSTFVGNGLARCVFYPGLKLMHQHCSAPDGR FT VLKVMVSSTNSTLIGGLPQAQVSIGTLRQHIGPGHDRTISRALATAQVQGYNVRAVQQG FT NATVFAPQGGHVEGTPSADLQMGAGETLVQTGGTHWKLQRSASSRFVVEGTSRTVGPRR FT MADVRVDRGDFPDQGARGQQQPPVNMPLQSGILPGMHWSAATSFKCAAEAAENSILARW FT SLRSIISESGTDAWIKWQREQRSTFLVEGTIAMSVNIMAGTTLGLVCDAFNRAKHLDNF FT PSALGQNMPQKVFPLSNPLERNFSFSMSELLGYTMHPHASAYEDVQFILYVLNTNDVAC FT AAEWGGHILWQVKDDAAEPYELQLPVVPKDGARLDVWRGPATMSQGLFPYTTNANLGFA FT EPRSVLTGYAPITSFHQAALSYYISYGGTIHGRLVKIGSGLVQVDIALAMWHECADMVS FT YRGIIKIPHVLLRGGEGEFALPINAPFGYTSTRDRGPTLAVCLVSGVVAPKDCSAPYRY FT MIYFDRVEFNAQLPPVIANRLQFLWASFSEFKPVVPASNRTWMIPCRLSDYKVEGATIK FT MEAHPLARLVASAGMFQGTMRFILRWTFSNTLNTPTTYVQLTHKFGTATVNESYLTKLA FT HASQATEISIDVVVAGLGGFMRSGVAESRENFVAVSLSKPGDLAKLDIIIELMPGFRFR FT GPTITPLVRV" XX SQ Sequence 6360 BP; 1390 A; 1590 C; 1667 G; 1713 T; 0 other; ttgaaaacaa aatggtaaag cccgtagtgt tctcaaacgg cgagtccgtt ctacccaaag 60 ccctcatttc tgaggctagg gaggttgcag ccttcctaaa gtccaccaga aaccctgcag 120 gtttctgggt tacgttcgtt gcgcagggta cctccctgtc ggtttcccag gtggctcttt 180 gtgccatcaa tggcatcgtg tgccgtcagt ccgtggaatc ccattccaac gggccatcgg 240 ccgttgcctt ctggtccgct ttgcgggcca ggcttaggtc ctttttgaag ggccatggtc 300 ggtgggttac cagcctactg gccaaaacca ctgaggcctt tgaggcccag gatctctgcc 360 gttaccagcg gcagagaact gcgtacctcg ctaggggtgc agtcctaagg gccaaggccc 420 ttaggaagag aaagactgct ctccggaagg agagggcagc ccagttggcg cagcgccaac 480 tggaaggtga gcgccgggcg gctgcccggc tggtgaggga gacccgcaag gggctccaaa 540 ttttacgctg caagcttgca gcgctcttct ccccccctcc tccctttccc accactgagt 600 gggcttggga atctcttcct tcctcccccc tcccaactta ttgggagttc ttttctgacg 660 ccacttcggt ggcgcggacc cctagcaggg gggccaccct gctctccgcc cttcccgagg 720 gcgttgattc ttttctccca tcctccttcc ccaggaggat gactttacag tcagcccaga 780 ctacaaaggg ttccttcgga ttggtcctcc ggaggatgat tttaaaagct gtagcagcac 840 agcgttcttt tcttgctgcc ttctacaatt acttcttcaa gcgagaggac gtgattgcgg 900 aagaaaaatc ctctatctct gaggtgcctg ctgaggatga tccatacgca ggctttgacc 960 actggggagc ttattctgct tttttatcga gtgtgctccc ctttcccacc ctaagggttg 1020 gaaaattcca tagtgctggt aattaccagt actgtgcgcg cgcttctacg tgcgctgaga 1080 tggatatgca tttgcattct ctttttgaag agtgcaagga atgccggatg ggcgccggtc 1140 ctccatctca ggggttttcc ccccttttcc gcgagcccct taataggggt aggctgtttc 1200 tcgcagccct ccccgagcgt ttggttctac cggacctgca aatgcacttg cactcttttt 1260 ttgacgagtg cacttgctac gcggggcatg tggccgatac cctcaattat agggtacctt 1320 ccactcggga ttgcgctgtt gttgctaaga gaacgggcgt ggccataaaa catgtccacg 1380 ccctcctctc ttgctgggat cgcattttag agatcccctc agtgcggcca cccctttttg 1440 agcgtggttg gcgcaagagt gttaagagca tatgcactgc tcatgctctt tgggcccagt 1500 cccaagtttc ttcttgtgag cccatggata tggatgtgca ttcactattt tgtgagtgcg 1560 ctgaatgtga gataaattcc tctcaccctc cactgggctc taagtccata tctctgtctg 1620 gaccacctac gctttttagt agtaggccca ggtattctct tcccaaatat gctgggaatt 1680 ctttagtgta cacacctgac aagtgtgtgc attgtaaaaa cgaggcagag ctaccggtgt 1740 cggtagctga gcgcgaagcc tacttgacca ttacgggcaa gtacggcgta tgcctctgcg 1800 gagggccaag aattgttaaa actcttcagc cttcctccgt ctacacctac gctaagcgct 1860 gtgggtggaa atttttgaat cctgtcaggt accactacgc gacctatgaa gaagattatc 1920 tctgcttcat gcgcgcactg gatgccctac aggctagttt tgtgatagag cagcctcgct 1980 caaaaattga aatacgaggc cttcttcgat acgtggtgcg agctcccgca ccccctatcg 2040 aagatgaaga tcttttccta gatgcgcctt catacttgcc ggcgcagtct gggataggag 2100 ccaacgtgca aactctccac cagagagaac caagtggaac tgaacaaact ccttttcagg 2160 gagcgagtcg accacttggt gcgtctgatg gggctgtggc cacacaagct cctttccgcc 2220 aagaggcacg ccaacgctgg ttggggagac gtgcccacga cctggagtcc caggaagacc 2280 gcattcgcaa gattgcggac tcccaaggaa tctcatacgc atccgctagg gctgcgtatg 2340 gagctccaga cgaagctgtg ccctcacagg caccaatttt gcctcggtta gatgaggcct 2400 atacaagaga ctcagttgtg ccccgctttt tattagggcg tacagcttca acgcgtgcac 2460 aacgcaccgt tgacgtggtc ttagcatcac ccagtgtgga taaagagaac cacactgcca 2520 ctttttattt caaccctgtg tctcagcagg aaattgatcg catgaaatct agtggcaaca 2580 ccatggtttc catcgatgca gttgagatcg cgattgatcc ggttggtatg cccggagatg 2640 atacagatct cactgtgttg gtgatgtggt gtcaaaacac tgacccacag cgtgcgattc 2700 ttggtgcttt atccactttt gtgggcaacg gcttggcccg gtgtgttttt tatccaggct 2760 taaagttgat gcaccagcac tgtagtgctc ctgacggccg tgttttaaag gtcatggtct 2820 cgagcaccaa ttcgactttg attggagggc tgccccaggc ccaagtgtct ataggcaccc 2880 tccgacaaca tataggcccc ggtcacgata ggacaatatc aagggccctt gcgactgcac 2940 aagtacaggg ttacaatgtg cgtgcagtgc aacaaggaaa tgcgactgtc ttcgcgcccc 3000 agggaggaca cgtcgagggg acccccagcg ctgatttgca aatgggggcc ggtgagactc 3060 tcgtgcaaac gggtggcact cattggaaat tgcaacgatc ggctagcagt cggttcgtcg 3120 tcgaggggac ctcacgtaca gtgggaccac gacgcatggc cgacgtgcgt gtcgatcggg 3180 gtgacttccc cgatcaagga gccagggggc aacaacagcc ccccgtaaat atgcctttac 3240 aatccggtat attacccgga atgcattggt ctgctgccac atcttttaag tgtgcggcgg 3300 aagctgccga gaattccatc ttggcacgtt ggtccttgcg ctcaattatt agcgagagcg 3360 ggaccgatgc atggattaag tggcaacgcg aacaacgttc cacttttctt gtggagggta 3420 ctattgccat gtctgtaaat attatggctg gtactacgct aggtctagtg tgtgacgctt 3480 ttaatagggc gaaacaccta gacaattttc ctagcgctct ggggcaaaat atgcctcaga 3540 aagttttccc cttgagcaat cctttggaga gaaattttag cttctccatg agtgaattgt 3600 tggggtatac tatgcatccc cacgcttctg cgtatgagga tgtgcaattt attctttatg 3660 tcctcaacac aaatgatgtc gcgtgcgcgg cagagtgggg aggacacatt ctttggcaag 3720 tgaaggacga tgctgcagag ccctacgaac tgcaattacc ggtggttccc aaggacggag 3780 ctcgtctgga tgtctggcgc ggccctgcta ctatgtcgca gggtttgttt ccgtacacga 3840 ccaatgctaa tttaggcttc gccgagccta ggtctgtact gacggggtac gccccgataa 3900 cctctttcca ccaggcggcc ttatcatact atatttcgta tggtggaacc atccatggcc 3960 ggttagtcaa aatcggttct ggactagtgc aagtggacat tgcactagcc atgtggcatg 4020 aatgtgccga catggtgagt tataggggga ttattaaaat ccctcatgtc ctgctcagag 4080 gtggcgaggg agagttcgcg ctccccatca acgccccttt tgggtatact tccacgagag 4140 atcgcggacc tacattggcc gtgtgtctcg tgtctggtgt agtggcgcca aaagattgct 4200 cagcccccta tcgttacatg atatattttg atagggttga gtttaatgca caactgcctc 4260 ccgtgattgc caatagattg caatttcttt gggcatcatt ttcggagttt aaaccggttg 4320 tgcctgcctc caatcgcacc tggatgatac cttgtcgcct ttcggactac aaggttgaag 4380 gtgcaaccat caaaatggag gcacatccac ttgcccgctt agtagcgtct gcgggtatgt 4440 ttcaaggtac gatgaggttc atcttgcgat ggaccttttc gaatacttta aatacgccca 4500 ctacttatgt gcagctaacg cataagtttg ggacggccac tgtcaacgag tcgtacctga 4560 cgaagttggc acacgcctct caagccaccg agattagtat tgacgtggtg gttgcggggc 4620 ttgggggctt catgcgctcc ggggtggccg aaagtaggga gaactttgtt gctgtctccc 4680 ttagtaagcc gggtgacttg gcaaagctcg atataattat agagctaatg cctggcttta 4740 ggtttagggg gcctaccata acccctcttg tacgcgttta gagcgtgtgc ggcttggtgc 4800 cctaagcacc cagtctccta tctgtctcta ggagcgagtc gctgccgtta gcagcgttca 4860 gagggatgtc atcacttagc tctgtacctg caggttgaag atgtgaatgg gaattgagca 4920 ctcccagtcc cccagcatag ctggtcccat gagacgacac atgggtctga aatgatagta 4980 aactatccac tcagtttgac gcctgagttg agtagtagac acaaatggaa aatgttataa 5040 ggttggtgtt cctgaaaagg ggctcctgtc cgcttgcgtg gttaacattt tccttctttg 5100 tgttgcattg gtctgactgc tggaaagaca gctgacatgg aagacaaagt cttatccggt 5160 ctgccagaga tgaagaccta aaaccaatat ctcaacctca tccaaggagg ctaactttgg 5220 acggtgggga tgccggtcct atccctgtag tggctgtcct taaaatgata gtctaccttt 5280 atttgttcgg ggaatcgaac atcatatctg catttagatt agttcattct gttttagttg 5340 tagattcata catacgcaca tgggatgtga ttacccatgt agtacgcgaa cgcttccgct 5400 cttaatagca cctctcgcat ggtgtccacg agagctctgc tgtgtgaagt tcttaattta 5460 gctatgtgtg cttggaatta cgggtgtaac cccctccaga gctggcgtgt aggatgccta 5520 tgctgatatc attggatttt cctttgatgt gtcagaaagg ttccccgaag ccggcccacg 5580 ctcctggcgg gagtagtgga ggtcatctcc gagcgcgtat agtttaaaat ctttttgaac 5640 ttaatgatag ccgaagcaag tagctagcgt tgcattggtc ttgcgtggtt ttcagcgcaa 5700 ggcggtctta atttataggc tctgtctagc cttagctgaa actagtagct tgatccatgg 5760 gtgttaagtc caggaaagca gtagtaaatg atgcagttcc accctacccc ataactaatt 5820 gggatgcgtg gttgctgatt ttcacgaacc tttctaatcg gtaatacact tgtggagata 5880 gccaaaagtt aggcatgatg agtgggcgtc ctcttttatg acgtcattaa atggagtatc 5940 acaacttctg gcaaccgtgt aacggcaaca gtgttaaggt gacactggtg ggctgactgc 6000 aatcagttcc atgcgaccgg tcttagtagt accaagaatg ctacagccaa gggctccatg 6060 agttttagtt aacgaatatc tactgccatc cgtagtaatg tgtggtggtc ctctgtctta 6120 cctggtatat gagccggatg tgctggtaac acatctgcga cttcgattcc aagcccagga 6180 attcaggggg ttatgtgggt aggtagcgtt agctaggggg ttgtttcgcg atatttgttg 6240 ccccgttagt gtttcaaaat tcgcttattg tatgagtgtc ggactcaagc agtgtttagg 6300 ttttatttct ttgatttaaa tgtttacttt taagttttcc ttttacgtaa tctttccgac 6360 //