ID FR851461; SV 1; linear; genomic RNA; STD; VRL; 7918 BP. XX AC FR851461; XX DT 21-APR-2011 (Rel. 108, Created) DT 21-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Cherry leaf roll virus RNA1 complete segment, isolate E395, genomic RNA XX KW complete viral segment, complete genome. XX OS Cherry leaf roll virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7918 RA von Bargen S.; RT ; RL Submitted (11-APR-2011) to the INSDC. RL von Bargen S., Phytomedicine, Humboldt-Universitaet zu Berlin, Lentzeallee RL 55/57, Berlin, 14195, GERMANY. XX RN [2] RA von Bargen S., Langer J., Robel J., Rumbou A., Buettner C.; RT "Complete nucleotide sequence of Cherry leaf roll virus (CLRV), a subgroup RT C nepovirus"; RL Unpublished. XX DR MD5; b829c526d329d2956e5e5c15a4cc797d. DR EuropePMC; PMC3314827; 22218961. XX CC related sequence FR851462. XX FH Key Location/Qualifiers FH FT source 1..7918 FT /organism="Cherry leaf roll virus" FT /segment="RNA1" FT /host="Rheum sp." FT /isolate="E395" FT /mol_type="genomic RNA" FT /country="Germany:Bornheim" FT /collected_by="Joachim Hamacher" FT /collection_date="1987" FT /db_xref="taxon:12615" FT CDS 12..6350 FT /gene="P1" FT /product="polyprotein 1" FT /db_xref="GOA:F4NCE2" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:F4NCE2" FT /protein_id="CCA64538.1" FT /translation="MVKPTVFSNGESVLPKALISEAREVAAFLKSTRNPAGFWVTFVAQ FT GTSLSVSQVALCAINGIVCRQSVESHSNGPSAVAYWSALRAKLRSFLKGHGRWVTSLLA FT KCAEIFESRDLCRYQRQRAAYLARGAALRAKALKKRKVALQKERATQLAQRQLEGERRA FT AARREREARKGLQTLRRKLAALFCPPPPFPTTEWGWDFLPSSPLPAYRDFFTSPLLEEA FT SVAPPPVGPVGFNKSTPQALYVSVRARLATFSKATGALFPLVDYDRFCPGHLMMFQLMH FT RLVAAYMACPVLSLVEDGLGALLRGDDYLFVFKNMMVAATQVVNKLSTCGRSAMQVQAG FT FGISNFFRGVGNSLASGFFEGARQSAIDAKDFIIDGINWTADKTVGAFVRALRDEFSNS FT VGKYLNAVSEYKAQIENFWAWAVRWSNNLMNKVDVSLRALQGSAFFAAALVIVGGIVYL FT IENLLPPAATGLPIGSLSSLFVGGALLFWCGSELFQNEKVMNIRVAIVTMAERMFSKNK FT AVQSGNMTVQAGIQDIFGVPLTLMETIGSGLCGSALSSMTYVGKFGQAMDNIRKGVMCM FT RQFLGWMLEQLAELYDNVSGRKVAFFRELATLAQVDVEKWISDVQEFLLVAEVAPEGDR FT VILDTVLLLLNKGHTIQRLLCQTKQGTSFNYGRLVATLVKSLDDVYTKYTKAGRRVMYR FT FVPFWAYFFGKARTGKTIFANNFKNTMVQYLGTTSENIFYKNARDQFWPKYRQQAIVIV FT DDLSAVENPPSLESEFIQLMSTMPYGLNMAAVDEKGSEFNSKMVITTSNKYTAPSCAKI FT HDMDAFNLRRHACVEVRRIEGVLYDPKNPYLSSEARFVNNQDQAPEGEWMAMEQMQEEL FT IARYQRHHEAQVDEYNFWKKNARNTHDVFDILEEKIKEEGFWLSSAEFCMPDRASQGVS FT AADRFLGVDGKIIKYDALSFEGAYFDGKHLAKSAQDLEHLAMVKYHEFSDLLRAWSVNG FT VVRQFMEQLLTGPTHVDSANALNLDALPSHREFFDSMTLPKRAVLRLIQKKVDMIKAGP FT AFEFTPTKGFTLAKVLKDGYDYVYNNGGKIFLIFAAVVILWFLCGTAMHLLRQIFCGGV FT GAGSAGAMMKMSVQSTIPSGSDVQSYASRNLRRVYRPTRLGLQSAMNPVETVSQAEQLM FT AWIDTPQGNLISCCRFKARSLAMTYHQARAIAPGAKIFITYMTAAGTPSVPLEHIWDPQ FT ETAPTPNLRRFNDTEVCVYTHPQLSPLPGPLESMFVEDMQAGPSVYHIEGRVMKLVRDS FT HEFLPNDFVGAPEEIVPHVWSGVVHLNTHALTIDNYKWGGDYKINIPRSLVGSYPNAKE FT DCGGLLFAKIHNSYKVIGMHVSGEQLADGSYLSAAALLPRPSLFMSAQSGLRTLTIEAG FT KDTRGVSKVGFIKAEEIPRAPRKSSFIEVEEELKVPVPPGVPLKQIAILSNSDERLKGT FT QFEGYDPLRQATVKCEDPMFDLRSDVLEDVLEDVLETWFDCAPSLSLLSDEEMVNGNDE FT EVFLDAVVHSTSEGYPYVLERGPGEKGKERYLEQDPALPEGKLRVRPGTSVHRDLLALE FT KSIHFTIPILVGMEIPKDERLKESKILTPATRTFTVLPMPYNLLLRKYFGRCVAFLQGN FT RHRLPCAVGINPYSNEWTRIFDGLARVSPKALNGDYKGFDGKLNFQMYDAIARLLCCLH FT RDESTSTARYNLILAMYARYSLCGSQVYEVRAGLPSGCAITVIMNSIFNEILIRYAYRV FT SVGPILRNRFSHFVKLIVYGDDNLIAVDPQLASGTFAGYEGGKMVVTDVFDGATIQKVL FT AQVNITITDGSDKNAKEWHFKSLESLDFLKRGFKRMADGRVLAPLDLSAIFSSLHVVRP FT DQGSTAAAVNINARVALRELWLHQDQNLFEMVREFYKRHNFVDLPTWRECRDFHQSQYS FT EWQPFKEYKFLELPLPEQENREFMENHATRKSVCVVADQTIVVGPAWKPSNPEGFFVVD FT LLGPTCGRGGNVTNIPTYGDGSGRLGTATWVRNWRSAKKQPIVQLAIQARKEGKIIAFR FT DAAPFLNGWNAAIAFCEGLGMDSNDLIAVYSRSGGLHRSLIERNFKAASFEPRKVAPGV FT FA" XX SQ Sequence 7918 BP; 1869 A; 1799 C; 2059 G; 2191 T; 0 other; ttgaaaacaa aatggtaaag cccacagtgt tctcaaacgg cgagtccgtt ctacccaaag 60 ccctcatttc tgaggctagg gaggttgcag ccttcctaaa gtccaccaga aaccccgcag 120 gtttctgggt tacatttgtt gcacagggta cctccctgtc ggtttctcaa gtggcacttt 180 gtgccattaa cggcatcgtg tgccgtcagt ccgtggagtc tcactccaat ggaccgtcgg 240 ccgttgccta ttggtccgct ctcagggcca agcttagatc cttcttgaag ggtcacggtc 300 ggtgggttac cagcctgctg gccaaatgtg ccgagatttt cgaatcgcgg gacctctgcc 360 gttaccagcg gcagagagct gcatacctcg cgagaggtgc agcgttgagg gctaaggccc 420 tcaagaaaag gaaagttgcc ctccagaagg agcgggcaac ccaactggcc cagcgccagc 480 tggaaggaga acgccgggca gcggctcggc gggaaagaga ggcccgtaag ggccttcaga 540 ctttgcgccg caagcttgcg gccctcttct gtcctcctcc tcccttcccc actactgagt 600 ggggctggga ttttctccct tcttcccccc tcccggctta ccgggatttc ttcacgtctc 660 ctctacttga ggaggcttct gttgctccac ctcccgtggg gcccgtgggc tttaataagt 720 ccacaccaca ggcactttat gtgtctgtgc gtgcccggtt ggctactttt tctaaagcca 780 cgggtgcgct tttccctttg gtcgattacg accgtttttg tcccgggcac ttgatgatgt 840 ttcaattgat gcatcgtctt gttgctgcct acatggcgtg tcccgttctc tctttagtgg 900 aggatgggct aggggccctt ttacgggggg acgattatct gtttgttttt aaaaacatga 960 tggtagccgc tactcaagtt gtaaataaat tgagcacttg tggtagatcg gctatgcaag 1020 ttcaggctgg ttttggcatc tcaaattttt ttagaggtgt tggaaactct ctggctagtg 1080 gcttctttga gggtgctagg cagagcgcca ttgatgccaa ggattttata atcgatggta 1140 tcaattggac agccgataag acggttggag catttgtcag agctctccgc gacgagtttt 1200 cgaactccgt cgggaagtat ctgaacgcag tgtccgagta caaagcacaa attgaaaatt 1260 tttgggcttg ggcagtgcga tggtctaaca atcttatgaa caaagtagat gttagtctta 1320 gagctttaca gggatctgct ttttttgctg cggcccttgt aatagttggg ggcattgtat 1380 atttaataga aaatttgctc cctccagcag ccactggatt accaataggc agcctctcct 1440 ctctttttgt cgggggggcc cttctttttt ggtgtggctc tgagctgttc cagaatgaga 1500 aggttatgaa tattcgcgtg gccattgtaa caatggctga gcgtatgttc agcaaaaata 1560 aagccgtgca gtccggcaat atgactgttc aagctggaat ccaagatata tttggggttc 1620 ccttgacact catggagact attggctcag gtctctgtgg gagtgctctc tcttccatga 1680 cttacgtcgg gaagtttggg caggccatgg acaacatccg taagggtgtt atgtgtatgc 1740 gccaattctt gggctggatg ttagaacagc ttgcagagct ctatgataat gttagcggcc 1800 gcaaggttgc tttctttaga gagctcgcga cgttagcgca agttgacgtc gaaaagtgga 1860 tatctgacgt ccaagagttc ttactcgttg cggaagtagc gccagagggt gacagggtca 1920 ttttagatac cgtgttactc cttcttaata aagggcatac tatccagcgt ctgctatgcc 1980 agacgaagca agggacctct tttaattatg gtcgccttgt tgccactctc gtcaagtctt 2040 tggatgatgt atatacgaaa tacaccaagg ctgggcgacg tgtgatgtac aggtttgtac 2100 ctttctgggc ctattttttt ggaaaagccc ggactgggaa aacaattttt gccaacaatt 2160 ttaaaaatac catggttcag taccttggta ctacgagcga gaatattttt tataaaaacg 2220 ctcgtgatca attctggccc aagtacagac aacaggccat agttatagtt gacgacttaa 2280 gcgcggtgga gaatccaccg agcttggagt cggaatttat ccagctgatg agtaccatgc 2340 cttatggtct caatatggca gctgttgatg agaaaggtag tgaatttaat tcgaaaatgg 2400 taatcactac ctcaaataaa tatacagcgc caagctgtgc aaaaatacac gatatggacg 2460 cctttaactt gcggcgacat gcgtgtgttg aggtaaggcg tattgaggga gtcctttatg 2520 accccaaaaa cccttatctc tcctcagagg cccggtttgt caacaaccag gatcaggccc 2580 ctgaaggtga gtggatggct atggagcaaa tgcaagaaga gctcatagcc cgctatcagc 2640 gccatcatga ggcgcaggta gatgaataca atttttggaa gaagaatgcc agaaataccc 2700 atgatgtctt tgatattctc gaagagaaaa tcaaagaaga gggtttctgg ctttcttctg 2760 ccgaattttg tatgcctgac cgtgctagcc aaggtgttag tgctgccgac cgctttttgg 2820 gtgtcgacgg caagatcatt aaatacgatg ccctcagttt tgagggggcg tattttgatg 2880 ggaaacacct cgccaaaagt gcccaagatt tggagcactt agcaatggtc aagtaccatg 2940 agttttcgga cctcttacgg gcatggtccg tcaacggagt ggtgcgccag ttcatggagc 3000 aactcctgac tggtcccact catgtggaca gcgctaatgc actaaactta gatgccctgc 3060 cgtctcatag agaatttttt gattctatga ccctaccaaa aagggctgtt ttgaggctta 3120 tccagaaaaa agtggatatg atcaaagcgg gacccgcttt tgaatttacc cccacaaagg 3180 gtttcactct agccaaggtc ctgaaggatg gctacgatta tgtatataat aatggcggga 3240 aaatcttttt aattttcgcc gccgtagtta ttctatggtt tttgtgtggg accgccatgc 3300 atctacttcg ccaaattttt tgtggtggcg taggggccgg ttctgcaggg gccatgatga 3360 aaatgtctgt acagtcgaca attccatcag gctctgatgt gcagtcgtac gcatcgcgca 3420 atttgcgtcg tgtgtacagg ccaaccaggc tgggtttaca atctgcgatg aaccctgtgg 3480 aaactgtttc acaggcagag cagttgatgg cgtggataga cacccctcaa gggaatctta 3540 tctcatgctg tcgctttaag gcccgatctc tagccatgac gtaccaccag gctagggcta 3600 tcgccccagg ggccaaaatt tttatcacat atatgactgc agccggcacg ccaagcgtgc 3660 cgctggagca tatatgggat ccacaagaga ccgctcctac tcctaattta cggcggttta 3720 atgatactga ggtttgcgtg tacacgcacc ctcagttgtc tcctctcccg ggccctctcg 3780 aatccatgtt cgtggaggat atgcaagcag gcccatcggt gtatcacatc gaagggaggg 3840 tcatgaaatt ggtacgagac tcccatgagt ttctgcccaa cgattttgtt ggcgctcctg 3900 aggagatcgt gccacacgtc tggtcaggcg tggtacattt gaacacccac gccctcacta 3960 ttgataacta taagtgggga ggtgactata aaataaatat ccctaggtcg ttagtgggtt 4020 cgtaccccaa cgccaaggag gattgcggcg gccttttatt cgccaaaatc cataattcct 4080 acaaggttat agggatgcac gtttctgggg agcagctagc ggatgggtcg tatctgtctg 4140 ctgccgccct tctcccgaga ccgagcttat ttatgtcggc acagtcgggc ttgcgcacct 4200 tgacgattga ggctggcaag gatacgcgtg gtgtttccaa ggtcggtttt attaaggccg 4260 aggaaatacc acgcgctcct cgcaaatcct cctttattga ggtggaagaa gagctgaagg 4320 tcccagttcc tcctggtgtg cctttgaaac aaatagccat cttgtctaac tcggatgagc 4380 gccttaaggg cactcaattt gaggggtatg atccgcttag gcaggcaact gtcaagtgcg 4440 aggacccaat gttcgattta agatcggacg ttttggaaga tgtgctagag gacgtgctag 4500 aaacctggtt tgattgcgca ccctcgttaa gtcttctttc cgatgaagag atggttaatg 4560 gcaacgacga agaggttttc ctcgatgctg tcgtccattc cacttcggag ggatatccct 4620 acgtcctcga aagagggcca ggggagaagg gcaaggaaag gtatctcgaa caagatcctg 4680 ccttgccaga aggcaaattg agggtccgtc ccgggacttc tgtgcacagg gacttgctcg 4740 ccctagaaaa gagcatccac ttcaccatcc ccattttagt tgggatggag atacctaagg 4800 atgaaagact caaagagtcc aaaatcctta caccggcaac ccgtactttc acggtgttgc 4860 ccatgcccta caacctcctg ctccgtaaat atttcggcag gtgtgttgct ttcttacagg 4920 gcaataggca tagattgcct tgcgcagtcg ggataaaccc ttactccaac gagtggaccc 4980 gaatttttga tgggttggct cgagtgtcgc ctaaggcact aaatggagac tataaagggt 5040 tcgacggcaa gttgaacttt caaatgtatg atgctatagc gcgcctttta tgctgcttac 5100 atcgtgatga gagtacttca actgccaggt ataacttgat actcgctatg tatgcccggt 5160 actccctgtg tgggagccag gtgtatgaag tgagggcagg gttaccctct ggctgcgcaa 5220 ttaccgttat catgaactcg atttttaatg agattctgat acggtacgcc tatagagttt 5280 cggttgggcc tattttgcgc aataggttca gccactttgt taagttgatt gtctatgggg 5340 atgacaattt gatagctgta gatccccaac tcgcctccgg aacctttgct ggttatgaag 5400 ggggtaaaat ggtagtcacc gatgtttttg atggtgctac tatacaaaaa gttctggccc 5460 aagttaacat tactataact gatgggtcag acaagaatgc caaagagtgg cattttaaat 5520 cattggagtc tctcgatttt ttaaagagag gtttcaagag aatggctgat ggccgagtgt 5580 tggcaccact cgacttgagc gccatttttt cctcgctgca tgttgtgcgc ccagatcagg 5640 gctccacagc tgcagccgta aatattaacg ctagagtggc cttgcgcgaa ctctggttac 5700 accaggacca aaatcttttt gaaatggtcc gggaatttta caaacgccac aattttgtgg 5760 atttacccac gtggcgcgaa tgtagggatt ttcatcagtc ccaatattcc gagtggcagc 5820 cttttaaaga atataaattc ttagagctgc ccctccccga gcaagagaac agggagttta 5880 tggaaaacca tgccacgagg aaaagtgtgt gcgtggtcgc ggatcagacc atagtcgtag 5940 gtcccgcgtg gaagccctcc aacccagagg gtttttttgt tgtagatcta ttgggtccaa 6000 cctgtgggcg tggcggaaat gtcaccaaca tacccacgta tggtgatgga tctggcaggt 6060 tgggtactgc cacctgggtg cgtaactggc gctctgcgaa gaaacaacct attgtccagt 6120 tagccatcca ggctaggaag gaaggcaaaa ttatagcctt ccgggatgca gctccattcc 6180 tcaatgggtg gaatgctgct atagcctttt gcgagggtct cggcatggat tcaaatgatc 6240 taattgccgt gtactctcgt tctgggggct tgcaccgctc tttgatagag cgtaacttca 6300 aggctgcaag ctttgagcca cgtaaagtgg ctccaggcgt gttcgcctag tttagtgcct 6360 taagcactca gtctcctggc tgtctctagg agcgagtcgc tgccgttagc agcgttcaga 6420 gggatgtcat cacttagctc tgtacctgca ggttgaagat gtgaatggga attgagcact 6480 cccagtcccc cagcatagct ggtcccatga gacgacgcat gggtctgaga tgatagtaaa 6540 ctatccactc agtttgacgc ctgagttgag tagtagacac aaatggaaaa tgttataagg 6600 ttggtgttcc tgaaaagggg ctcctgtccg cttgcgtggt taacattttc cttctttgtg 6660 ttgtattagt ctgactgctg gaaagacagc tgacatggaa gacaaagtct tatccggtct 6720 gccagagatg aagacctaaa accaatatct caacctcatc caaggaggct aactttggac 6780 ggtggggatg ccggtcctat ccctgtagtg gctgtcctta aaatgatagt ctacctttat 6840 ttgttcgggg aatcgaacat catatctgca tttagattag ttcattctgt tttagttgta 6900 gattcataca tacgcacatg ggatgtgatt acccatgtag tacgcgaacg cttccgctct 6960 taatagcacc tctcgcatgg tgtccacgag agctctgctg tgtgaagttc ttaatttagc 7020 tatgtgtgct tggaattacg ggtgtaaccc cctccagagc tggcgtgtag gatgcctatg 7080 ctgatatcat tggattttcc tttgatgtgt cagaaaggtt ccccgaagcc ggcccacgct 7140 cctggcggga gtagtggagg tcatctccga gcgcgtatag tttaaaatct ttttgaactt 7200 aatgatagcc gaagcaagta gctagcgttg cattggtctt gcgtggtttt cagcgcaagg 7260 cggtcttaat ttataggctc tgtctagcct tagctgaaac tagtagcttg atccatgggt 7320 gttaagtcca ggaaggcagt agtaaatgat gcagttccac cctaccccat aactaattgg 7380 gatgcgtggt tgctgatttt cacgaacctt tctaatcggt aatacacttg tggagatagc 7440 caaaagttag gcatgatgag tgggcgtcct cttttatgac gtcattaaat ggagtatcac 7500 aacttctggc aaccgtgtaa cggcaacagt gttaaggtga cactggtggg ctgactgcaa 7560 tcagttccat gcgaccggtc ttagtagtac caagaatgct acagccaagg gctccatgag 7620 ttttagttaa cgaatatcta ctgccatccg tagtaatgtg tggtggtcct ctgtcttacc 7680 tggtatatga gccggatgtg ctggtaacac atctgcgact tcgattccaa gcccaggaat 7740 tcagggggtt atgtgggtag gtagcgttag ctagggggtt gtttcgcgat atttgttgcc 7800 ccgttagtgt ttcaaaattc gcttattgta tgagtgtcgg actcaagcag tgtttaggtt 7860 ttatttcttt gatttaaatg tttactttta agttttcctt ttacgtaatc tttccgac 7918 //