Dbfetch

Dbfetch

ID   FR828102; SV 1; linear; genomic RNA; STD; VRL; 879 BP.
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AC   FR828102;
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DT   28-FEB-2012 (Rel. 111, Created)
DT   27-AUG-2014 (Rel. 121, Last updated, Version 2)
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DE   Wheat yellow mosaic virus partial gene for polyprotein, coat protein
DE   region, isolate JS3 clone 20, genomic RNA
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KW   .
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OS   Wheat yellow mosaic virus
OC   Viruses; Riboviria; Potyviridae; Bymovirus.
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RN   [1]
RP   1-879
RA   Adams M.;
RT   ;
RL   Submitted (22-FEB-2011) to the INSDC.
RL   Department of Plant Pathology and Microbiology, Rothamsted Research,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
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RN   [2]
RX   DOI; 10.1094/PHYTO-01-13-0013-R.
RX   PUBMED; 23550972.
RA   Sun B.J., Sun L.Y., Tugume A.K., Adams M.J., Yang J., Xie L.H., Chen J.P.;
RT   "Selection pressure and founder effects constrain genetic variation in
RT   differentiated populations of soilborne bymovirus Wheat yellow mosaic virus
RT   (Potyviridae) in China";
RL   Phytopathology 103(9):949-959(2013).
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DR   MD5; c9b02399bb73fec48f476da1f65b98f5.
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FH   Key             Location/Qualifiers
FH
FT   source          1..879
FT                   /organism="Wheat yellow mosaic virus"
FT                   /segment="RNA1"
FT                   /isolate="JS3"
FT                   /mol_type="genomic RNA"
FT                   /collection_date="2009"
FT                   /clone="20"
FT                   /db_xref="taxon:75746"
FT   CDS             <1..>879
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:H6RYE8"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:H6RYE8"
FT                   /protein_id="CBZ99009.1"
FT                   /translation="AADTQTDAQKEEARLAAATKKAADDADAARLRKVEADRVEAARVK
FT                   KASDDKKARDLTATKVDDGKIVADAGTKRTNAATKEKWSLPETKPVNAGLKLRISMDKL
FT                   KSAPKSIIEHNNSIALDSEVKKWSDAVRTSLGITTDEAWINALIPFLGWCANSGASDKH
FT                   AENQTMQVDNGTGTLTEMSLSPFIVHARLNGGLRRILRAYSDETVLLIQEHKIVTKWAM
FT                   KHGASAHAAYAFDFFVPRPWMNPQDIEVAKQARLAALGTGTYNTMLTSDTTNLRKTTNR
FT                   RVLDTDGHPELT"
FT   mat_peptide     1..879
FT                   /product="coat protein"
XX
SQ   Sequence 879 BP; 269 A; 240 C; 212 G; 158 T; 0 other;
     gcagctgaca cacaaacaga cgcgcagaag gaggaagctc gactggcagc cgccaccaag        60
     aaggcagccg atgatgccga cgctgcgcgt ctccgcaagg ttgaggcaga tcgtgttgag       120
     gccgcaaggg tgaagaaagc gagcgatgac aagaaagcca gggacctcac agcaaccaag       180
     gttgatgatg gcaaaattgt tgccgacgct ggaacaaaaa ggaccaatgc cgccaccaaa       240
     gagaaatggt cacttccaga aacaaaaccc gtcaatgcag gactaaagct tcgaatctca       300
     atggacaaat taaagagcgc acccaaatct ataatcgaac acaacaactc catcgctcta       360
     gattcagaag ttaagaagtg gtcagacgct gtacggacca gtcttggcat caccacggat       420
     gaggcatgga tcaatgccct cattccattc ctcggatggt gcgccaacag tggcgcttca       480
     gacaaacacg cagaaaacca gaccatgcaa gttgataatg gaactggaac tttaaccgag       540
     atgagtctct ccccattcat tgttcacgct aggttgaatg gtggcttgag acggatccta       600
     cgagcctaca gtgatgaaac tgtgctcctc attcaggaac acaagattgt cacaaaatgg       660
     gctatgaaac acggcgcatc tgcacacgcc gcgtacgctt ttgacttctt tgtcccccgc       720
     ccgtggatga acccacagga catcgaagtt gcgaaacaag cacgtcttgc tgctttgggc       780
     acaggtacat acaataccat gctcacctcc gacacaacca acctccgcaa gacaaccaac       840
     cgcagggttc tggatactga tggacaccca gaactaacc                              879
//