ID FR823299; SV 1; linear; genomic RNA; STD; VRL; 7062 BP. XX AC FR823299; XX DT 22-JUN-2011 (Rel. 109, Created) DT 03-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Raspberry leaf blotch virus segment RNA1, complete genome XX KW complete genome; complete viral segment. XX OS Raspberry leaf blotch emaravirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Fimoviridae; Emaravirus. XX RN [1] RP 1-7062 RA MacFarlane S.A.; RT ; RL Submitted (18-FEB-2011) to the INSDC. RL MacFarlane S.A., Scottish Crop Research Institute, Plant Pathology, RL Invergowrie, Dundee, DD2 5DA, UNITED KINGDOM. XX RN [2] RX PUBMED; 22049090. RA McGavin W.J., Mitchell C., Cock P.J., Wright K.M., Macfarlane S.A.; RT "Raspberry leaf blotch virus, a putative new member of the genus RT Emaravirus, encodes a novel genomic RNA"; RL J. Gen. Virol. 93(Pt 2):430-437(2012). XX DR MD5; 3bf964106c59b5f6876b3cf9fe88ac65. DR EuropePMC; PMC4178757; 25100845. DR EuropePMC; PMC5552725; 28848524. XX FH Key Location/Qualifiers FH FT source 1..7062 FT /organism="Raspberry leaf blotch emaravirus" FT /segment="RNA1" FT /mol_type="genomic RNA" FT /country="United Kingdom:Tayside" FT /isolation_source="Red Raspberry" FT /collected_by="W. McGavin" FT /note="segmented negative strand RNA plant virus" FT /db_xref="taxon:1980431" FT CDS complement(127..7014) FT /transl_table=1 FT /gene="RDRP" FT /product="RNA dependent RNA polymerase" FT /function="replication" FT /db_xref="GOA:F8K9Y7" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/TrEMBL:F8K9Y7" FT /protein_id="CBZ42024.1" FT /translation="MTSLRQKAVKFQSEIVSNVQSGEIDEPTKSLIERFLGLLGSTRTR FT YDINSKDKKIQATYKKRFEDDVSNTEELINLSNAFAYHPPQKNLLDVAFSIISLLEMIR FT HDIMIDIVKESITLGTDYIYIAKDFSLSDYFPDIPSLSTPDILFANGDGKKLIVEIKVT FT MQTDLEVYYRKYKQLVKERSDVVVINYNLDGFTSYGDYREVDNYLSYSTRTELIDTIIN FT NCSKIRLNYKSFPEYSYFSKFYNSVEGEENFVTGYRERCKKLESYGEVVSLFGEKWEEI FT VDDMDNYSLIENYDSTFDRLKSAHDDAVAYCTKDFDKFDTLYQRNMSKGLYGQTSLSID FT DLPTFQDEKVLEKYQMTNKYKPSLYIPVTKSFKIGIKRSKHYSESFSNLKNIINTPYLN FT CVRDLLEFISNEEIMENLINPEKSEIKDFPEKEKKNSSKFPIYSDHNVDLFVNNGFKIN FT HPKKTYINDSICGYSAKEKTEKKTALSYKKSLPDCDRMEKLLSHIINSSYNNECYKRDL FT VVIAETTKNKNYNPLSVNQRSKHLDLVFNNHLIFKSLISLNTLSSKRFRFVQTTDPNTA FT LVMLPNSDALTGAPLRYFCLSIVKKEDEMDSIELNKLLGLYAGHMRNSKYTIIVSKVIS FT LDMTRLKMLSMSISKYVQLSSYYENLGNIDNRIKTTCMLLSNLITLSSLSITDTFKNLM FT MVCYSTFSNPDDLIKDKLECRPTNLAHIYILKKIFRAIKLSTQQRAKIIMGIKSTKISN FT DGTDLIDTGFDLSCDLELPISGIKTNNPKEIFHEAFILFYLGNKGLHGSPQEMLNLYCT FT PLEFEDEFTKNLEIYDTVISELNDDKFGFDFEALTISSKLVYSQLTSESQDLRANIKEN FT LALDKPILSRRQFTSTKSMVDDIPLTKVVENLEDVRNLSELEIYIKSCIVDNPTQFMID FT VNNHIAKLNKINMERNKTKAIFFGELMDVRGKYNRIPEISIKYISNQPFIIFKDFKKDF FT YHHCGVDHMSHYNGKVFDVVIKENHINKFETLRDYYNSNYLDERDLKVRIFYKDQRSYN FT DREIYTGNLATRLCLFPLERLFESINKKLPEEAITIKGEKKQKKMMEQRVDMIKKRKQY FT NRNNEYKSEIISISSDASKWSARDIFLKFIVPIATCPYITSEEKYFYLYLCIKYHKKNI FT LLTENAYFNAIKFHNDNSERHVYEDLTKNYTTNRQVIRSNWLQGNLNATSSFVHYCSAK FT LTTVMLEVINKKYNMNNLMNFMVHSDDSVYDMLILKKNEDYVMGKYTGTFIYSLLQWST FT KKHRITINTKKTYMSNFYKEFLSSLIIGNELFYFYLADVLPISSDVTYDSPLDDLSGFS FT GYINNAFLHACPYKIIESSILLINHLTLSTYNLNISSKNTPYNDIFNDESDFYDVPLQV FT LPRYKLPISLGGLIPFYCGDAYKIIVRLMQVAYKGYTLNQDKMFNEIFDLEAVTRYLNT FT EKDESFLNYIKMCLLCVNSDIILRDPKDPYDLSDRDMARISIIDVLPHVNPKSNKITFT FT SKKFKNEESQYRLKSAINPMWSICNPSKHQEIEDKIISNYGDKKFVDSLIFQKPQVQFA FT RRIIHSNAKIYKYSLEDSNNLYAIQDIYEKIKQQAKSIDLTAEAILNYINIYLFTDQNV FT ASTLHLYFHKKEWQRISRNEINYRIATQKSIYPQEFGLFSITTLIRDLITENKSIELDK FT IDRKAETLIDIAEKTLLPLKNIIKIYEFPEDIDEDFRDYVNFRYNNYESYNDILIKNQN FT INKDYDLRILEIKKIYLSLIIRYYIDMKRRIINNESVKIEYNTPRTLLLTINNYMKRDV FT ISSKLNITTKQINKIDDYVLDKFGLYTDPNCYVKYKLDHRVTILHDRLKYSINKESAIN FT DEMNFLTVVKSKLPEFFEHNRSMIKTNGKTWNSIMANYKNQNDINKSLFLHSNNFLSHN FT NLISMIISSNYIQNYWPRPHSNEYKGAEAVYHLSGCFINVKVIPIGERCKMILKFYKPD FT QRFRQRINYNNIKAKLLERIRVDFRSDISNAYTLPLNNANNNPVYINGPRLTTNFDPSY FT KLLVNMDEFSYSNLRVNVESDDYDRIMYKLSLNTYDHLVFYIRERSTMNINKVYEFLSE FT HRNEEYYTLLYNSLGISTKLPETIGYEYMNLEPDYIYEFLEQKSNFEQNCINDYLLRKS FT CKLYGLYNNLSEKSKHSELSELEKVLSRLTSVYLTFILHNEDMVDNLDSNISIDEVATI FT LSKISVDSDYHKEMISNIPLNESIPFPILINKCFNIGGSSVNRLFMSIYYIVKYYYNTE FT VEDLNLFN" XX SQ Sequence 7062 BP; 2284 A; 1124 C; 905 G; 2749 T; 0 other; agtagtgttc tccctaaaaa actgactatc tataacaaaa tgacaaataa taacaaggtg 60 attcctagaa atacattaaa aaattctgca tatcatgaaa ataaatccaa gcattaaatg 120 actaatttaa ttaaataagt tcaaatcttc aacttctgtg ttataataat atttaacaat 180 gtaatatatt gacataaata atctattcac tgaactacct ccaatgttaa aacatttgtt 240 tatcaatata ggaaatggaa tggattcatt tagaggaata ttacttatca tttctttatg 300 ataatctgaa tcaacactta tcttagataa tattgttgct acctcatcta tagagatatt 360 actatctaaa ttatcaacca tatcttcatt atgtaatata aaggttaaat atactgatgt 420 cagtctagat aaaacctttt ctaactcact taattcacta tgtttagatt tttcagatag 480 attattatat aacccataca atttgcaaga cttacgtaat aagtaatcat ttatacagtt 540 ttgttcaaaa tttgattttt gctctaaaaa ttcatatata taatcaggtt ctaaattcat 600 atattcataa cctattgttt caggtaattt ggtgctaata ccaaggctat tatataataa 660 tgtatagtat tcttcgtttc tatgttcaga cagaaattca tacactttat ttatgttcat 720 tgtagatctt tctctaatat aaaacactaa atgatcatag gtattcaatg atagtttgta 780 cattattcta tcataatcat cactctcaac attgaccctt aggtttgaat aagaaaactc 840 atccatattg acaagcaatt tgtagctagg atcaaaatta gtagtcagtc ttggtccatt 900 tatataaact ggattgttgt tagcattatt taaaggtaga gtgtatgcat tagatatatc 960 actcctaaaa tccaccctta ttctctctag tagtttagcc tttatattat tataattaat 1020 tctctgtcta aacctctgat caggtttata aaatttaaga atcattttac atctttcacc 1080 aataggtatc actttaacat taataaaaca accagataaa tgataaacag cctctgcacc 1140 tttatactca ttactatgag gtcttggcca ataattttgt atgtaattac tactaattat 1200 catgctaatt aaattgttgt gtgataaaaa attattggaa tgcaagaaca aagatttatt 1260 tatatcattt tgatttttgt aattggccat tatactattc catgtttttc cattagtttt 1320 aatcatgctg cgattatgct caaaaaactc tggcaatttt gattttacca cagtcaaaaa 1380 attcatctca tcatttatag cactttcttt atttatagag tattttagcc tatcatgaag 1440 aattgtaact ctatgatcta gcttatattt aacatagcaa tttggatcag tatacaagcc 1500 aaatttatcc aatacataat catcaatttt attaatttgc tttgttgtta tattcagctt 1560 gcttgatata acatcccttt tcatgtaatt atttatcgtt aacaataagg ttcttggtgt 1620 gttatactct attttgacac tttcattatt gattattctt cttttcatat ctatataata 1680 ccggattatt aatgatagat atatcttctt aatttccaat attctaagat cataatcttt 1740 atttatattt tgatttttta ttagtatatc attgtaagat tcataattat tatatctaaa 1800 attcacataa tctctaaaat cttcatctat atcttctgga aattcataga tttttatgat 1860 attctttaag ggtagtaagg tcttttcagc tatatcaatt aatgtttcag ctttcctatc 1920 tatcttgtct aattcaatag acttattttc agttattaaa tctcttatga gagttgttat 1980 agaaaacaaa ccaaattctt gtggatatat acttttttga gtagctattc tataatttat 2040 ttcattccta cttattcttt gccattcttt tttatggaaa taaagatgta atgtggatgc 2100 tacattttga tctgtgaata aatatatgtt tatataattc aatatagctt ctgctgtcaa 2160 atcaatactt ttggcttgct gcttgatctt ttcatatata tcctgtatag catatagatt 2220 attactatct tctaatgaat acttataaat tttagcgttc gagtgtatta ttcttctggc 2280 aaattggact tgtggttttt ggaatatcaa tgaatccacg aatttcttat caccataatt 2340 tgatattatt ttgtcctcaa tttcctgatg cttgctggga ttacatatac tccacatagg 2400 atttatagca gattttaatc tatattgtga ctcttcattt ttaaatttct tagatgtaaa 2460 agtgatctta ttagacttag ggtttacatg aggtaacaca tcaattattg agattctagc 2520 catgtctcta tctgatagat catagggatc tttgggatct cttaaaatta tatcactatt 2580 cacacataat aagcacattt ttatataatt aagaaaagat tcatctttct ctgtatttaa 2640 gtatctagtc acagcttcta aatcaaatat ctcattaaac attttatctt gatttaatgt 2700 atatccttta taagccactt gcatcagcct aactataatt ttataagcat caccacaata 2760 aaatggaata agaccaccaa gagaaattgg taatttatac cttggtaaca cttgtagtgg 2820 tacatcataa aaatctgatt catcattaaa tatatcatta taaggtgtgt tcttagatga 2880 tatatttaaa ttataagtgg ataaggttaa atgatttatt aataatattg atgattctat 2940 tatcttatat gggcatgcat gaaggaaagc attgtttata taaccactaa atccagagag 3000 atcatcgagt ggtgaatcat aagttacatc actggatatg ggcaatacat cagctaaata 3060 aaagtaaaat aattcattgc ctattatgag tgatgataag aattctttat aaaagtttga 3120 catataagtt tttttagtat ttatagtgat gcgatgtttc ttagtagacc actggagtaa 3180 actatatata aaagttcctg tgtatttgcc cataacataa tcttcattct tcttaagtat 3240 gagcatgtca tagacactat catctgaatg caccatgaag ttcatcaaat tgttcatatt 3300 gtatttttta tttataactt ctaacatcac agtagtgagt ttagctgaac aatagtgtac 3360 aaatgaagat gtagcattga gattaccttg caaccaatta gatctaataa cttgtctatt 3420 agtggtgtaa ttttttgtta ggtcttcata aacatgtctt tcactattat cattatggaa 3480 ttttatagca ttaaagtaag cattctcagt taacaatata ttctttttat ggtactttat 3540 acataaatac agataaaagt atttctcttc tgaagtaatg tagggacagg tagctattgg 3600 tacaatgaat tttaagaata tatccctagc tgaccattta gatgcatcag aagagattga 3660 aataatttca gatttatatt cattattcct attgtattgt ttacgttttt taatcatatc 3720 cactctttgc tccatcatct tcttttgttt cttctcacct tttattgtta tagcttcttc 3780 aggtagtttc ttatttattg attcaaacaa cctctctagt ggaaacagac ataatcttgt 3840 tgctaagtta ccagtgtata tttctctatc attgtatgat ctttgatctt tgtaaaatat 3900 tcttactttc aaatcccttt catccaaata attactatta taataatctc tcaaagtttc 3960 aaatttgtta atatggtttt cctttataac aacatcaaaa acttttccat tgtaatgact 4020 catgtgatca acaccacagt ggtgatagaa atctttctta aaatctttaa aaattataaa 4080 tggttgattg ctaatgtact taatggatat ctcaggtatt ctattgtact tacctctaac 4140 atccatgagt tcaccaaaaa atatagcttt agtcttattc ctctccatat ttattttatt 4200 aagcttagct atatgattat tcacatcaat cataaattgt gttggattat ctacaataca 4260 actcttaatg taaatttcta attctgataa attccttaca tcttccaagt tttctactac 4320 tttggttaga ggtatatcat caaccataga ttttgttgaa gtgaattgcc tcctacttaa 4380 gattggttta tctaaagcta gattttcctt tatattagct cgtaaatctt gtgattcact 4440 agttaattgt gagtaaacca attttgaaga aatggtcagt gcttcaaagt caaatccaaa 4500 cttgtcatca tttagttcag atatgacagt atcataaatt tccaggttct ttgtaaattc 4560 gtcttcaaat tccaatggtg tgcagtacaa attaagcatc tcctgtggtg atccatgcaa 4620 tcctttattt cctaaataga acaatataaa tgcttcatgg aagatttctt ttgggttatt 4680 agtttttata ccagatatag gtaattctaa atcacagctt aagtcaaaac ctgtatcaat 4740 taaatctgta ccatcgttgc ttatcttagt agattttatt cccataatta tcttagctct 4800 ttgttgagtg gacaatttaa tagctctaaa tatcttcttc aatatatata tgtgtgcaag 4860 atttgttggt ctacattcta gcttatcttt aatcaaatca tcaggattag aaaaagtaga 4920 atagcaaacc atcattaaat tcttaaatgt atcagtgata cttagcgatg ataaagtaat 4980 taagttagac aacaacatgc atgtagtctt tattctatta tcaatatttc ctaaattttc 5040 atagtaactt gataattgaa catacttgga tattgacatg ctcagcattt tcaacctagt 5100 catgtctagt gatataacct ttgatacaat aatagtgtat ttagagttcc tcatatgacc 5160 agcatataat cctaataact tgtttaattc tattgaatcc atttcatcct ctttcttcac 5220 aattgataaa cagaagtatc tcaaaggagc acctgttaaa gcatcagagt taggcaacat 5280 aaccagagca gtgtttggat cagttgtctg tacaaatcta aatctcttag atgatagtgt 5340 attcaatgat attaatgact tgaatattaa atgattatta aaaactaagt ctaaatgttt 5400 tgatctctga ttaacactta atgggttgta attcttattc tttgttgtct cagcaatcac 5460 tactagatct cttttataac actcattatt ataactgctg tttattatgt gtgataataa 5520 tttttccatt ctatcacaat ctggtaatga ttttttatat gagagtgcag ttttcttctc 5580 agttttctcc tttgcactat aaccacaaat actatcattg atataagtct tctttggatg 5640 attaatctta aagccattat taacaaataa atctacatta tgatccgaat aaattggaaa 5700 tttagaagaa tttttctttt ctttttcagg aaaatccttt atttcacttt tctcaggatt 5760 gatcaagttc tccatgattt cttcattaga tatgaattct aaaagatccc tgacacaatt 5820 taagtaaggt gtattaatga tgttcttcaa gtttgaaaaa ctttcagaat aatgctttga 5880 cctctttata ccaattttaa aacttttagt cacaggtata tacaagctag gtttgtattt 5940 attagtcatt tgatattttt ccagaacttt ctcatcctgg aaggttggta aatcatctat 6000 gcttagactt gtttgaccat ataagccctt actcatattc ctttggtata aagtatcaaa 6060 cttatcaaaa tcttttgtgc aataagctac tgcatcatca tgggcacttt taagcctatc 6120 aaatgttgaa tcatagtttt ctattaagga ataattatcc atatcatcta caatttcctc 6180 ccacttctca ccgaataaag aaaccacttc accataggat tcaagtttct tacacctctc 6240 tctataccca gtcacaaagt tctcttcacc ttctactgaa ttgtagaatt tactaaaata 6300 actatactca ggaaagctct tataattaag cctaatcttt gagcaattat taattatagt 6360 gtcaatcagt tcggtcctag tgctataact tagatagttg tccacttcac gataatcacc 6420 gtaactggta aatccatcaa gattatagtt gatcactact acatcagacc tctctttgac 6480 aagttgctta tatttcctat aataaacttc taaatcagtc tgcattgtga ctttgatttc 6540 aacaatgagt ttcttaccat ctccattagc aaagagtata tcaggggtgc tcaagcttgg 6600 tatgtcaggg aagtaatcag aaagactgaa atccttggca atatagatat aatcagttcc 6660 aagagtgatt gattctttaa caatatctat catgatatca tgccttatca tctccagcag 6720 ggaaattata gagaatgcca catctagcaa attcttctgt ggtggatgat aagcaaaggc 6780 attggataag tttattagtt cttcagtgtt gctaacatca tcttcaaatc tcttcttgta 6840 agtagcttga attttcttat ccttgctatt gatgtcatac ctagtccttg ttgaacctaa 6900 aaggccaagg aatctttcaa ttaaactttt tgttggttca tcaatttcac cagattgcac 6960 attagataca atctcagatt ggaacttcac tgctttctgt ctcaagcttg tcatttttgt 7020 ctgttcttgt ctggttggta gttttttagg gagttcacta ct 7062 //