ID FR772082; SV 1; circular; genomic DNA; STD; VRL; 2748 BP. XX AC FR772082; XX DT 10-JAN-2012 (Rel. 111, Created) DT 10-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Hollyhock leaf curl virus, complete genome, isolate [Pakistan:20-4:06] DE Faisalabad3 XX KW complete genome. XX OS Hollyhock leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2748 RA Zia ur Rehman M.; RT ; RL Submitted (29-DEC-2010) to the INSDC. RL Zia ur Rehman M., University of the Punjab, School of Biological Sciences, RL Lab 10, SBS, University of the Punjab, Lahore54590, PAKISTAN. XX RN [2] RA Zia Ur Rehman M., Haider M.S.; RT "Begomoviruses infecting Hollyhock in Pakistan"; RL Unpublished. XX DR MD5; 9ffb950c9e2b69c6e8675ddbf140e612. XX FH Key Location/Qualifiers FH FT source 1..2748 FT /organism="Hollyhock leaf curl virus" FT /host="Alcea rosea" FT /isolate="[Pakistan:20-4:06] Faisalabad3" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad" FT /isolation_source="host leaves" FT /collected_by="Muhammad Zia Ur Rehman" FT /collection_date="2006" FT /clone="CA-13" FT /db_xref="taxon:163655" FT CDS 130..477 FT /gene="av2" FT /product="pre-coat protein" FT /db_xref="GOA:H1ZWP0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H1ZWP0" FT /protein_id="CBY88991.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLLSEEYSPDTVGYDLIRDL FT ISILRSRNYVEASCRYRHFYPRVEGASASELRQPLCNPCSCPHCPRHKITHVGEQAHEP FT EAQNVQNVQKP" FT CDS 290..1060 FT /gene="av1" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:H1ZWP1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H1ZWP1" FT /protein_id="CBY88992.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYATRAVVPTVRVTKSRMWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYGAKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1063..1467) FT /gene="ac3" FT /product="replication enhancer protein" FT /db_xref="GOA:H1ZWP2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H1ZWP2" FT /protein_id="CBY88993.1" FT /translation="MDSRTGEPITAAQAWSGAYTWEVPNPLYFKILSHDNRPFTMTTDI FT IKIRIQFNYNLRRALGVTSGFLTYRIWTTLRPPTGLFLRVFKTQILKYLNNLGVISINS FT IIRAVNHVLWEKIEQTVYVDMNSEIKFDIY" FT CDS complement(1160..1612) FT /gene="ac2" FT /product="transcriptional activator protein" FT /db_xref="GOA:H1ZWP3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H1ZWP3" FT /protein_id="CBY88994.1" FT /translation="MRFSSPSKDHCTPVPIKVQHREAKRVHRRRRVDLECGCSYFLSIN FT CFNHGFTHRGTHHCSSSMEWRLYLGGSKSPLFQDPQPRQPAIHNDNGHNKDQNPIQLQP FT SESSGSHKWFSDLPNLDDLTPSDWSFLKGIQDTNPQVSQQSGCNLN" FT CDS complement(1509..2600) FT /gene="ac1" FT /product="replication associated protein" FT /db_xref="GOA:H1ZWP4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H1ZWP4" FT /protein_id="CBY88995.1" FT /translation="MAPPKQFQIYAKNYFLTYPTCSLTKEEALSQLQNLQTPVNKKYIR FT ICREFHENGEPHLHVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT AKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYVSPFSYSSFDQVPEELEEWVSENVVDAAARPLRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNTALKNWALKNAIFVTLEGPL FT YSGSNQSTAQGSQEGTQEEESRS" FT CDS complement(2141..2449) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H1ZWP5" FT /protein_id="CBY88996.1" FT /translation="MKMGNLIFTCSSSSRANTNAKITDSSTSYPQPGQHISIQTFRELN FT PAPTSSPTSLRTGTFSTGANFRSTEDQQEEGNKQPTTLTPQHLTREVSQRLLESLRN" XX SQ Sequence 2748 BP; 707 A; 576 C; 642 G; 823 T; 0 other; accggatggc cgcgcaattt ttttgggtcc caccactaac tcttgtctgc caatcatata 60 cggcgctcaa agcttaaata aatatcccgc ttattataaa tacttccttg ctaagtttca 120 gtttgaaaaa tgtgggatcc acttttaaac gagttccccg agacggttca cgggtttcgt 180 tgcatgcttg cgataaaata cctgcaactg ctgtctgagg aatactctcc ggatacggta 240 ggttacgatt taattcgcga tttaatttct attttacgat ctaggaatta tgtcgaagcg 300 tcctgccgat atcgtcattt ctacccccgc gtcgaaggtg cgtcggcgtc tgaacttcga 360 cagcccctat gcaacccgtg cagttgtccc cactgtccgc gtcacaaaat cacgcatgtg 420 ggcgaacagg cccatgaacc ggaagcccag aatgtacaga atgtacagaa gccctgatgt 480 tccaagaggc tgtgagggtc catgtaaggt ccaatccttt gagtccagac acgatgtagt 540 ccatataggt aaggtcatgt gtattagtga tgttactcgc ggtactgggc tgacccatag 600 agttgggaaa cgtttctgtg ttaaatcagt ctatgtattg ggtaagatct ggatggatga 660 aaacataaag tccaaaaacc acactaacaa tgtgatgttc ttcttggtcc gtgatcgacg 720 gcctgtggat aagcctcagg attttggaga ggtcttcaac atgttcgaca acgagcccag 780 caccgctact gtcaagaatg ttcatcgaga tcgctaccag gtgttgagga aatggtatgc 840 aacagttacg ggtggtcaat atggagcaaa ggaacaggcc ttggtcaaga agtttgtccg 900 agttaacaat tatgttgttt acaatcagca agaggcaggg aaatatgaga atcattctga 960 gaatgccctg atgttgtata tggcatgtac ccatgcctct aatccagttt acgctactct 1020 taagattagg atttacttct acgattctgt aaccaactga tattaataaa tatcgaattt 1080 tatttctgaa ttcatgtcta cgtacacagt ttgttctatt ttttcccata atacatggtt 1140 tacagctctg ataattgaat taattgagat tacacccaga ttgttgagat acttgaggat 1200 ttgtgtcttg aataccctta agaaaagacc agtcggaggg cgtaaggtcg tccagattcg 1260 gtaggtcaga aaaccacttg tgactcccag agctctccga aggttgtagt tgaattggat 1320 tctgatcttt attatgtccg ttgtcattgt gaatggccgg ttgtcgtggc tgaggatctt 1380 gaaatagagg ggatttggaa cctcccaggt ataggcgcca ctccatgctt gagctgcagt 1440 gatgggttcc cctgtgcgtg aatccatggt tgaagcagtt tatagataga aaataagaac 1500 acccgcattc aagatcgact ctcctcctcc tgtgtaccct cttggcttcc ctgtgctgta 1560 ctttgattgg aaccggagta cagtggtcct tcgagggtga cgaaaatcgc atttttgaga 1620 gcccaattct ttaatgctgt gttcttgtcc tcgtcgagga attctttata gctgctgtta 1680 ggaccaggat tgcataagaa gattgtcggt atgccgcctt taatttgaac tggcttcccg 1740 tacttagtgt tggactgcca gtccctttgg gcccccataa actccttaaa gtgcttgagg 1800 aagtgcgggt cgacgtcatc aatgacgttg taccacgcgt cgttactata gacttttggg 1860 cttagatcca aatgcccaca taaatagtta tgtgggccta gagacctagc ccacattgtt 1920 ttcccagtac gactatctcc ctcaattact atactttgag gtctcagggg ccgcgcagcg 1980 gcgtcgacaa cattctcaga cacccactct tcaagttctt ctggaacttg atcgaaagaa 2040 gaataggaaa aaggagaaac ataaggagct ggaggctcct gaaagatcct gtctagattt 2100 gcatttaaat tatgaaattg tagtacaaaa tctttaggag ctagttcctt aatgactcta 2160 agagcctctg acttacttcc cgcgttaagt gctgcggcgt aagcgtcgtt ggctgtttgt 2220 tgccctcctc ttgctgatct tccgtcgatc tgaaattcgc cccagtcgag aatgtccccg 2280 tccttagcga tgtaggactt gacgtcggag ctggatttag ctccctgaat gtttggatgg 2340 aaatgtgctg acctggttgg ggatacgagg tcgaagaatc tgttattttt gcatttgtat 2400 ttgccctcga actggatgag cacgtgaaga tgaggttccc cattttcatg aaactctctg 2460 cagattctaa tgtatttttt gtttactggt gtctgtaggt tttgtaattg ggaaagtgct 2520 tcctctttag taagagagca agtgggataa gtgaggaaat aatttttggc atatatctga 2580 aattgtttgg gaggagccat tgacttggtc aatcggtacc cagatatagt cttatgtcaa 2640 ttggtgaacg gtaccctata tatattgggt actgaatggc aatatttgta attatgaaaa 2700 taaattcaaa atcctcacgc tccaaaaagc ggccatccgt ataatatt 2748 //