ID FR751145; SV 1; circular; genomic DNA; STD; VRL; 2764 BP. XX AC FR751145; XX DT 22-JUN-2011 (Rel. 109, Created) DT 22-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Cotton leaf curl Gezira virus DNA-A, complete sequence, clone NT31 XX KW complete genome. XX OS Cotton leaf curl Gezira virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2764 RA Tahir M.N.; RT ; RL Submitted (25-DEC-2010) to the INSDC. RL Tahir M.N., Agricultural Biotechnology Division, National Institute for RL Biotechnology & Genetic Engineering, NIBGE, Jhang Road, Faisalabad, Punjab, RL 38000, PAKISTAN. XX RN [2] RX DOI; 10.1371/journal.pone.0020366. RX PUBMED; 21637815. RA Tahir M.N., Amin I., Briddon R.W., Mansoor S.; RT "The merging of two dynasties--identification of an African cotton leaf RT curl disease-associated begomovirus with cotton in Pakistan"; RL PLoS One 6(5):e20366-e20366(2011). XX DR MD5; 63a7f822b54f4b2110a7d21b7a81c678. XX FH Key Location/Qualifiers FH FT source 1..2764 FT /organism="Cotton leaf curl Gezira virus" FT /segment="DNA-A" FT /host="Gossypium hirsutum" FT /mol_type="genomic DNA" FT /country="Pakistan:Sindh, Hala" FT /collection_date="2005" FT /clone="NT31" FT /tissue_type="Leaf" FT /db_xref="taxon:222459" FT CDS 162..530 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:F8K9T6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F8K9T6" FT /protein_id="CBY85327.1" FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQSRVILCTCPHCPRHKQTSGVVQQTQL FT QEAQNLQTVSEPRCPKGV" FT CDS 322..1098 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:F8K9V8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F8K9V8" FT /protein_id="CBY85328.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW FT SNRPNYRKPRIYRLYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGTGLTH FT RTGKRFTIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDYRDRFQVMRKFSATVTGGPSGMKEQALVRRFFKINSQIVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(550..1032) FT /gene="C5" FT /product="hypothetical protein" FT /db_xref="GOA:F8K9W7" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:F8K9W7" FT /protein_id="CBY85329.1" FT /translation="MSTCHIQQQSILSMVLILRSFLMVINNLTVNLKKPTNKSLFLHPR FT RTTSYSSTKLTHHLETISIIILYSSSTWLIIKHVKNLTKIHRGIPIRSSITNKEKHDIV FT GVILLLNVLIHPYLTKNINGFDCETLSSTMSKPSSLGHIRNTTNNTSMLHIITLFI" FT CDS complement(1095..1496) FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:F8K9W0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F8K9W0" FT /protein_id="CBY85330.1" FT /translation="MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMV FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNV FT IRAVNHVLYDVLQTTVESEFTHNIQIKLY" FT CDS complement(1240..1644) FT /gene="C2" FT /product="transcriptional activator protein" FT /db_xref="GOA:Q77PZ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q77PZ9" FT /protein_id="CBY85331.1" FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF FT TCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQP FT QEGIGDSQMFHELQGLDDLTPSDWSFLKRI" FT CDS complement(1544..2095) FT /gene="C1" FT /product="Rep protein" FT /note="Disrupted replication associated protein" FT /db_xref="GOA:F8K9W2" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F8K9W2" FT /protein_id="CBY85332.1" FT /translation="MFLLFLSSSFDQVPEELEEWAAENVVEAAARPSRPISIVIEGESR FT TGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQS FT NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEDKNAHLKSWALKNATFITLSNPLYS FT GTNQSSASGGQEESNQETQD" FT CDS complement(2043..2633) FT /gene="C1" FT /product="Rep protein" FT /note="Disrupted replication associated protein" FT /db_xref="GOA:F8K9W3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F8K9W3" FT /protein_id="CBY85333.1" FT /translation="MAPPHRFQIYAKNYFLTFPKCSLTKEEALEQIQQISTASNKKYIK FT ICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFH FT NLNSNLERIFQEPPAPYVSPFFVFFVRPSSRRT" FT exon complement(2043..2633) FT /gene="C1" FT /number=1 FT mRNA complement(2183..2476) FT /gene="C4" FT CDS complement(2183..2476) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F8K9W4" FT /protein_id="CBY85334.1" FT /translation="MANLIYMCFSSSKGSSSAKIRDSSTWSPQIGQHISIQTFRELNPA FT PTSSPTSTRMETHWNGENSRSTVDLQEEDNRPPMTLTPQRLTQEVRQRLLGL" XX SQ Sequence 2764 BP; 689 A; 599 C; 619 G; 857 T; 0 other; accggtgggc gcgaaaaaaa aagtggtccc cgccccacgt gaacatgtcg cgcgagtgct 60 gtacatgtcg cgcgatgctg tccaatcaga actcgcgctc tacgcattat aatttgaaat 120 ttgaaatata aacttgctcc ctaagtttgt taggcataac tatgtgggat ccgttattga 180 acgacttccc tgaatccgtt cacggtttcc gttgtatgct agccgtgaaa tatttgcagg 240 ctgttcgaga gtcgtatgat ccttccactc ttgggtacga tcttcttagc gatctaatcg 300 gagttgttcg ccgtaccaac tatgtcgaag cgaccagcag atatcatcat ttccactccc 360 gcctcgaaag tgcgtcgccg tctgaacttc gacagtcccg ggttatcctc tgcacgtgcc 420 cccactgtcc tcgtcacaaa caaacgtcgg gcgtggtcca acagacccaa ttacaggaag 480 cccagaattt acagactgta tcggagccca gatgtcccaa aggggtgtga aggtccatgt 540 aaggtccagt catatgaaca gcgtgatgat gtgaagcata ctggtattgt tcgttgtgtt 600 tctgatgtga ccaagggaac tgggcttact catcgtactg gaaagcgttt cacaatcaaa 660 tccatttata ttcttggtaa ggtatggatg gatgagaaca ttaagaagca gaatcacacc 720 aacaatgtca tgtttttcct tgttcgtgat agaagaccgt atgggaattc cccgatggat 780 tttggtcaag tttttaacat gtttgataat gagccaagta ctgctactgt aaagaatgat 840 tatcgagatc gtttccaggt gatgcgtaag tttagtgcta ctgtaactgg tggtccttct 900 gggatgaagg aacaggctct tgttcgtagg ttttttaaga ttaacagtca gattgtttat 960 aaccatcagg aagctgcgaa gtatgagaac catactgaga atgctttgtt gttgtatatg 1020 gcatgtactc atgcttctaa tcctgtgtat gctacgttaa agatacggat ctacttctac 1080 gattcggtat ctaattaata taattttatt tgaatattgt gggtgaattc actttcgacg 1140 gttgtttgca atacatcgta caaaacatga ttgactgccc taattacatt attaattgaa 1200 attacgccta ttctatacaa atatttcata atctgcttcc taaatacgtt taagaaaaga 1260 ccagtcggag ggcgtgagat cgtccagacc ctgaagttca tgaaacattt gtgaatcccc 1320 aattccttcc tgaggttgta gttgaatctt atctgcatct ctaccattgt ttgattcccg 1380 tgcgttagag gaatctcctt tatggttttg aaatacaggg gattgttgat tgtccagata 1440 agtacgccat tctctgtctg atgcgcagtg atgagttccc ctgtgcgtga atccattgtc 1500 tctgcacgtg aaggctacgt atactgtgca accacaaggg atgtcaatcc tgcgtctcct 1560 gattgctctc ttcttggcct cccgatgctg aactttgatt ggtacctgag tacagcggat 1620 ttgagagggt gatgaaggtc gcattcttta atgcccagga tttgagatgc gcgttcttgt 1680 cctcgtctaa atactcttta tacgaggaat tgggacctgg attgcagagg aagattgttg 1740 ggatgccccc tttaatttga actggtttcc cgtattttgt gttgctttgc cagtcctttt 1800 gtgcacccat gaactcctta aagtgtttca gataatgcgg gtcaacatca tctatgacgt 1860 tataccatgc gtcattactg aacacttttg ggcttagatc aagatggccg cacagataat 1920 tgtgaggccc aagacttctg gcccatacgg tctttcctgt tctgctttcc ccttcaatca 1980 ctatactaat cggtctactt ggccgcgcag cggcctcaac gacgttctcc gccgcccatt 2040 cttcaagttc ttctggaact tggtcgaacg aagaagacaa aaaaaggaga aacataagga 2100 gctggaggct cctgaaaaat cctttctaaa ttactattta aattatgaaa ttgtaaaaca 2160 aaatctttgg gagctaactc ccttataacc ctaagagcct ctgccttact tcctgcgtta 2220 agcgctgcgg cgtaagcgtc attggcggtc tgttgtcctc ctcttgcaga tctaccgtcg 2280 atctggaatt ctccccattc cagtgtgtct ccatccttgt cgatgtagga cttgacgtcg 2340 gagctggatt tagctccctg aatgtttgga tggaaatgtg ttgacctatt tggggagacc 2400 aggtcgaaga gtctctgatt ttggcacttg aacttccctt cgaactggag aagcacatgt 2460 agatgaggtt ggccatcctc gtgaagctct ctgcagatct tgatatattt cttgtttgaa 2520 gctgtgctta tttgctgaat ttgctctagg gcttcttctt tggttagaga acattttggg 2580 aaagttagga aataattctt ggcatatatt tggaatctgt ggggaggagc cattgacttc 2640 gtcaatcggt actcagatgc ttctctccaa tatatcggta ctcaatatat agtgagtacc 2700 aaatggcatt ttggtaaaaa tcccaataat tttgaacccc catagcgccc accgttctaa 2760 tatt 2764 //