ID   FR727153; SV 1; linear; genomic RNA; STD; VRL; 1779 BP.
XX
AC   FR727153;
XX
DT   21-JAN-2011 (Rel. 107, Created)
DT   21-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE   Rice ragged stunt virus partial p6 gene, genomic RNA, isolate Longan, clone
DE   1
XX
KW   .
XX
OS   Rice ragged stunt virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus.
XX
RN   [1]
RP   1-1779
RA   Hoang H.T.T.;
RT   ;
RL   Submitted (17-NOV-2010) to the INSDC.
RL   Hoang H.T.T., Institute of Biotechnology, Plant Cell of Biotechnology, 18
RL   Hoang Quoc Viet, Cau Giay, Hanoi, 10000, VIET NAM.
XX
RN   [2]
RA   Hoang H.T.T., Lam N.D., Nguyen C.N., Chu H.H.;
RT   "Genetic variation of Rice ragged stunt virus strains isolated in Vietnam";
RL   Unpublished.
XX
DR   MD5; 73e54969306d09576ea80d2ef842afd7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1779
FT                   /organism="Rice ragged stunt virus"
FT                   /segment="6"
FT                   /host="Oryza sativa"
FT                   /lab_host="Escherichia coli DH5-alpha"
FT                   /isolate="Longan"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Long An Province, Cuu Long River Delta"
FT                   /isolation_source="host leaf tissue lysate"
FT                   /clone="1"
FT                   /db_xref="taxon:42475"
FT   CDS             1..>1779
FT                   /gene="p6"
FT                   /product="VP6"
FT                   /db_xref="UniProtKB/TrEMBL:E8ZF63"
FT                   /protein_id="CBY02494.1"
FT                   /translation="MQLFIVKLDSRSSASNEILVLDINELRKYVSKHQLSFRGAQVHET
FT                   NSEHSVRNWEDDNITMFFHTSNVFPSEKSVRHALFSRNSVHVCGPLNIGAFRDSLRVLQ
FT                   SPQFPIHTYGDDITVFDKLREFVVVPNSLAVVDMDTSAWERYTYSLFTDEPGTITLADE
FT                   TPPTISPTGRDSVSPVARFSPSISISSIAIGEVGSASKRRQRLVKQAKSSDKTPIPEIR
FT                   LNKKDTAFAETGTEQASPKTEIVAATVHKIPVNHAEADKRVVVLKGRTKDKAQGVREVT
FT                   SLARDTTGVEHELMQSVGDDSVQVSGELSGFGDESFEVSKTDVVGVENKQLAIDRVPEL
FT                   EPCGEVSEDEELVSEGMYAVPLDLDIYAEKCPSPTPPNSPKKREKADHEPIDISSAMMK
FT                   LRLIAAAFQKEMMAYDKIDCLSSDDPAYLLAQFCLRNLNGVFVPEYVEEHSSDEENADD
FT                   PNQGWNGTPVHGSREIFEKLSESRLASMEMISNVKPIRWNSKKTTYAVTIERGNPNLIA
FT                   NAVSDAWANHSQISKRVIRAFGCSTDYCLERLASRDYDAILMLMSSLSGACHATKSYCY
FT                   LQIVAYGSLAAPECEEL"
XX
SQ   Sequence 1779 BP; 491 A; 368 C; 457 G; 463 T; 0 other;
     atgcagctct tcatagtcaa acttgacagt cgatcgtcgg cttccaacga aattcttgtt        60
     ttagacatca acgaattacg taaatatgtt tcgaaacatc aactcagctt tcgcggtgct       120
     caagtccacg aaaccaattc agaacattcg gtgcgtaatt gggaggatga caacattact       180
     atgtttttcc acacgtcgaa cgtttttcct tcagaaaaga gtgttagaca cgccttattt       240
     tctagaaact ctgtccatgt atgcgggccg ctaaatatag gtgcatttcg cgattccttg       300
     cgtgtattac agagtcctca atttccaatc catacttacg gtgacgacat cacggtgttt       360
     gataagttga gggaatttgt agttgtgcct aatagtttag cagttgtaga catggacact       420
     tcagcctggg agcgttacac ctactcgctc ttcacagatg agcccggaac gataactctg       480
     gcagacgaaa cgccacctac tatcagccca acaggacgag attccgttag cccagtagct       540
     agattctcac cttcgatttc aatctcaagc atcgctattg gtgaagttgg ttcggcaagt       600
     aaacgtaggc aaagattggt taagcaggcc aagtcgtctg acaagactcc tattccggag       660
     attcgtctaa acaagaagga tacagcgttt gctgagactg gtactgagca agctagtccc       720
     aagaccgaaa tcgtggctgc cacagttcat aaaattcctg tcaatcatgc cgaggcggat       780
     aaacgcgtag tggtcttgaa gggtcggaca aaagataaag cccaaggggt tagagaggta       840
     acgagtttag cgagagatac aactggtgtg gaacatgagt tgatgcaatc agtcggtgat       900
     gatagtgtgc aagtgagcgg tgaattgagc ggcttcggtg acgagtcctt cgaagtgtcg       960
     aaaacggatg ttgtcggagt agagaacaag caattggcca ttgatcgagt accagaactt      1020
     gagccctgtg gggaggtgag tgaggacgag gagttagtgt cagagggaat gtacgctgta      1080
     ccattagatt tggatattta tgctgagaaa tgtcctagcc cgacgccccc caatagtccg      1140
     aagaagcgtg agaaggcgga ccatgagcca atagatattt cctcagcgat gatgaagcta      1200
     agattgatcg ctgcggcgtt ccagaaggag atgatggctt atgataaaat agattgcctc      1260
     agcagtgatg atccagccta cctacttgct caattctgcc ttagaaattt gaatggtgtg      1320
     ttcgtgcctg agtacgttga ggaacacagt agtgatgagg agaatgcgga tgatcctaac      1380
     caaggctgga atggtacacc ggttcacggt agtcgcgaga tctttgagaa attgagcgag      1440
     tctaggttgg cgtctatgga aatgatatca aatgtgaaac cgattcgctg gaacagcaag      1500
     aagacgactt acgctgtcac tattgagcgt ggaaatccaa atttgatcgc taacgcagtc      1560
     tctgacgcgt gggccaatca ttctcaaatt tcgaaaaggg taattcgtgc gttcggctgt      1620
     tcaactgact actgcttaga gcgattagcg tctcgtgatt atgatgctat tcttatgtta      1680
     atgtcaagcc taagtggagc atgccatgct acaaagtcgt attgctacct tcaaattgtc      1740
     gcttatggga gtctcgccgc acctgaatgt gaggagctt                             1779
//