ID FR727144; SV 1; linear; genomic RNA; STD; VRL; 7801 BP. XX AC FR727144; XX DT 01-JUN-2011 (Rel. 109, Created) DT 02-NOV-2011 (Rel. 110, Last updated, Version 2) XX DE Pigeon picornavirus B, complete genome, strain 03/641 XX KW . XX OS Pigeon picornavirus B OC Viruses; Riboviria; Picornavirales; Picornaviridae. XX RN [1] RP 1-7801 RA Kofstad T.; RT ; RL Submitted (17-NOV-2010) to the INSDC. RL Kofstad T., National Veterinary Institute, Section for Virology and RL Serology, Postboks 750 Sentrum, 0106 Oslo, NORWAY. XX RN [2] RA Kofstad T., Jonassen C.M.; RT "Screening of Feral and Wood Pigeons for Viruses Harbouring a Conserved RT Mobile Viral Element: Characterization of Novel Astroviruses and RT Picornaviruses"; RL PLoS One 6(10): e25964- e25964(2011). XX DR MD5; d905d3696b975ea8b69bb1cc0cae4344. DR EuropePMC; PMC3197151; 22043297. DR EuropePMC; PMC4376133; 25726971. DR RFAM; RF00164; s2m. XX FH Key Location/Qualifiers FH FT source 1..7801 FT /organism="Pigeon picornavirus B" FT /host="Feral pigeon" FT /strain="03/641" FT /mol_type="genomic RNA" FT /country="Norway:Oslo" FT /collection_date="19-Aug-2003" FT /db_xref="taxon:928289" FT CDS 592..7623 FT /product="polyprotein" FT /db_xref="GOA:F6IA11" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:F6IA11" FT /protein_id="CBY02483.1" FT /translation="MVFAKRVMPDSGVISVANVTQPFMTSCRKGKHIPPVIYCKEHEKP FT ECVIPEDMTTACSTYLRPCRKMIRCVNNGVHYMCRWHDIXHRAETRCGYTGPHRCCACH FT KQRFLEPQGAAMSMPATGNHTSESIATGGSSITTINYYGTNYAQSYAPNTQHTDPEAVA FT SGVSSITGPMSTFMASPTVEELAGDTSDRLFQLIAGNSSLITQESAAGAVVAYDKLPCY FT LENEGNTVDLMTRPGPSCDRIYTLDSFDLDNSTPAIVVPLPGVLADKGVFGQNLQFHYL FT YRCGWMAHVQINATQFHAGAWLCALVPECVVKGTDYDSTHFFESHEQAAFLETQYHQLT FT LYPHQIINLRTTNAATIVVPYTNIAPASFYTCHNTWRLIIIPLVKLMSPPSYSGTVSCT FT ISVQPICSQFNGLREAVVAQGVPTFDIPGSGQFCTTLANTGYPAFPIWTPSEGFPLPGR FT MTNLISVARIPTFLQGTGGNTYGFSVQNAIPADNTTLYSLDVSLLATEMEKTYIGRLAR FT MFAFYKGSIVLRFTYTGPKQSSGKLLIAYTPPGGARPTSREEAMLGTNIIWDFGLQSTC FT TFVIPYISISSRRFANTTGTIFSYDGYVTVWYQTAVVFAPNCPSSAVVLVTAAAGEDLE FT YTGFMDTAYYQGLGDDLSSVIQSTITNAVSQSVGQLTSVPNQHHEAGTANPVNVGAVPA FT LEAAETGVASVVGADVSSTIEPGASKLTNSSETSVVNMLSRYWYLNQLTLNHGANASSA FT DSGVIQLDLSPGGPNANVMSKLLRVLLSSATYWRFDLDLVVVPVHLEGTQAVQYMVEFC FT PVGSFASSTSHGYDAKNKGANPKIFTTTDKPPASMRIPFMCPASYFCSSYDGFKTYDGQ FT HYGACPSNTFGNLIIALPNGYSTQPRIKFYLYVRPVNIEAYMPRPLDQGDTRPATLSRG FT RLEVGDIENFTNAKPLITVEEQGGDWNDELPLQYPEPNLSNEQIQMTVCYREFGRDFIT FT PQMVCRFFFPRLGYGTNFSRPGGPYYRGYALRSPDWFERNAYVFQSLYTGVLELAHADV FT LVRWVDLEAVRADIDRYINSPHPLAGLMQNLVARLELNEMIYQQRIAAILERAVDDSDD FT EGSESDASDSGYYSLDSMGLSDLTSDSEFGSDVEYQGPIDIVANLAANIARPTIDVATD FT SMSEALDKAFNKAVRSVDQTIETHRRSWWKQVLGIVTKLVAVVTAITRSGGDPVILASM FT GAMLSVDLMNACPFEWAKQQVAQLMEVENIQEQGPSDWLKSFNSAITASKGLEWVVGKL FT WDLINWVREKLLPKAQARERDATIVNNLVKHLREWRACQLNPHIYTPESISELAKAIID FT IRDILETRCPGHPVLRSIAPTVAACAKHLSNSKKRPHEPIGLLIHGAPGTGKSLATKLI FT GTKLAKNLGNMEPYFMPPDPKYFDGYAGQPVVVMDDLGQNPDGEDMKLLCQMISCAEFY FT TPQADLPDKGKPFTSSFVLASTNNMTLTPPTIAHPKALNRRFQLDLNIEVQQDYKVDGK FT LDIDKALAPCSHTSKSFGKCCPFICGRAVRFYDVKGRFVMTLDEVVIELQKIKTHKTDV FT SNKLDIYLQGPILKKVSQKGKKPPQEVLDLIKEDTNPSRPMLQYALDLGFEIPDELMDD FT FVYQQIDMTTTNWKNWAICGTMLVTLLTTLYFIWKSLPANPQGAYDGIIQKNLRVPEKR FT KIEVQGPDPDTQYALSLMKHNLFPISTATGEFTALGIHGKNFIIPKHAAVEPYLVAGKE FT ITVDSEVELVNKGGCLELVMVSSSDLQDFRDLRPHMLDSFQPMSDCLLAVNSPKFPRTI FT VPVGKVHVYGSINLKLDTVKRVIYYHSPTKQGYCGGVILKAGKIIGMHIAGDGANGYAS FT LLLANYFKIEPQGVKIDLGPAPRPCNVNKKTRLEPSVWHDKIKVTKQPAVLKDGDPRCT FT VQFSKHLFDKYRGNYEGQEPEELEIVIEQYAAQLQPLLPKDVHEPMTLQQVVEGYGRLD FT GLDLNTSPGYPYCTQGVTKRKLVANGYSKLIEGLDLHGYGLPYVTFLKDELRPIKKVEA FT GNTRLIECSSINDTCRMKMKFGRLFEALLCNNGVASGVAVGCDPEIDWTRFATELGDNV FT FAFDYKNFDASLSPMWFKALDKLLQRLGFDTEDLIIGLCNSTHIYENQLYRTVGGMPSG FT CSGTSIFNTLINNMILKTAALRAYRGLDLNSFKILAYGDDCIMSYVYPLDPEHIARTAS FT MWGLQITPADKGEHFQPPGPIEGVTFLKRGFKKHPSTDILYHPIFDEDEIYQSLAWTKK FT PSETQNHILSLCHLIWHNGEESYNKFIALVRSEPVGRALQLPPYKLLEREWLDNFY" FT mat_peptide 592..927 FT /product="leader" FT mat_peptide 928..1269 FT /product="VP4" FT mat_peptide 1270..1848 FT /product="VP2" FT mat_peptide 1849..2529 FT /product="VP3" FT mat_peptide 2530..3447 FT /product="VP1" FT 3'UTR 2659..2810 FT mat_peptide 3448..4020 FT /product="2A" FT mat_peptide 4021..4365 FT /product="2B" FT mat_peptide 4366..5355 FT /product="2C" FT mat_peptide 5356..5631 FT /product="3A" FT mat_peptide 5632..5697 FT /product="3B" FT mat_peptide 5698..6249 FT /product="3C" FT mat_peptide 6250..7620 FT /product="3D" XX SQ Sequence 7801 BP; 2161 A; 1713 C; 1891 G; 2032 T; 4 other; tttatttagc tgttaagttt tatttgtgcc gagnccccat agtaggatct tggtgttcca 60 cattaagctc tnccgaccac acatccaaac gataggcggt gtaagggctc cctggctaag 120 tgtttactca ttgctaggga agtgttgcga cccgttacca gtaggaatac aggaggtctt 180 agttgcctaa ccagataaag tggtgctgaa atattgcaag ctcaatgtct ggcgaacgac 240 ggactaccgt tgaactattg ttaacgcccg cgtgtgtagg caacacacgg gttagtaggt 300 cacttacatt gacatccgtg ccgggaaagc ggatctgagc tatcgattgc ctgatagggt 360 gccggcgggc gcggtacgtg tggtatagtc cgctgtcttg gggtatggcg tctactcggt 420 tttgttgtcg ttttggaatg tcccatgtcg gagatgtcgt taccggtgtt tgctttactt 480 gtgcacgaat aagaaaacag agtttggagt tttggaagtt aatggataac atcaagtttc 540 cattgcgttc ctcgtgcatt ttaggccaga aaatcgacca caaaatcgag aatggtgttt 600 gcaaaacgtg tgatgccaga ttctggcgtg atcagtgttg caaacgttac tcaacctttt 660 atgaccagtt gccgaaaggg gaaacatatt ccacccgtga tatactgcaa ggaacatgag 720 aaaccagaat gtgtaatacc tgaagatatg accaccgctt gttcaactta tcttagaccg 780 tgtcgcaaga tgattagatg tgtgaataat ggagtgcact atatgtgcag gtggcatgac 840 atcrcccaca gagctgaaac caggtgtggt tatacgggac cacatcgttg ttgtgcttgt 900 cataagcaga ggttcttgga accacaaggt gcggccatgt caatgccagc tacaggaaac 960 cacaccagtg agtccatagc aacagggggc agttcgataa ccaccattaa ctattatggt 1020 accaattatg cacagtctta tgctccaaac actcaacaca cagacccgga ggctgtcgct 1080 tcaggtgtgt catctatcac aggtcccatg tcgacattta tggcatcacc cactgttgag 1140 gaacttgccg gagacacatc agataggttg ttccagctaa ttgcaggtaa ctcatccctt 1200 attacccagg agtcagcagc cggggcagtt gttgcatatg ataagctacc atgttatctg 1260 gaaaatgagg gaaacacagt ggacctgatg acacgaccag gaccatcatg tgacaggata 1320 tatactctgg attcatttga tttggacaac tccactcctg cgatcgttgt gccgctaccg 1380 ggtgtgttag cggataaagg agtgtttgga caaaatctgc agttccacta tctttataga 1440 tgtggttgga tggcgcatgt acaaattaat gcaacacaat tccatgctgg agcgtggctc 1500 tgtgccttgg tccctgagtg tgtagtcaaa ggaacagatt atgactctac ccactttttt 1560 gagtcacatg agcaggctgc gttcttagag acacagtatc atcagttgac actatatccg 1620 caccaaataa ttaacttgag gacaaccaat gcagccacga ttgtggtccc gtataccaac 1680 atagcaccgg cctcgtttta cacgtgtcac aacacgtgga ggttgatcat aattcctctt 1740 gttaagctga tgtcaccacc ttcctattca ggtacagtct cttgtaccat atcagttcag 1800 ccaatatgtt cacagttcaa tggattgcgc gaagctgtag tcgcacaagg tgtaccaacc 1860 tttgacatac ctggctcagg ccagttttgt acgactttgg ccaatacggg ttatcctgca 1920 tttcccatct ggacaccatc agaggggttc ccactaccag gtaggatgac aaatttgatt 1980 agtgtggccc gtataccaac atttttgcag ggtacaggag gaaacactta tggtttttcg 2040 gtgcagaacg caatacctgc tgacaacacc acattgtata gtttggatgt ctcactgtta 2100 gccactgaga tggagaaaac ctacataggc aggttggccc gaatgtttgc gttctataaa 2160 ggtagcatag tcttgagatt tacctataca ggacctaaac aatcatctgg caaattgttg 2220 atagcataca caccaccggg tggtgcgaga cccaccagta gggaagaggc catgctaggt 2280 acaaacatca tctgggattt tgggttgcaa tcaacgtgta cgtttgtgat cccgtatatt 2340 tccatatcat ctcgccggtt tgcgaacaca acaggcacca ttttctcata tgatggttat 2400 gtgaccgttt ggtaccaaac tgcggttgta tttgcgccca actgtccttc atccgctgtg 2460 gttttagtga ctgcagcggc tggtgaagac ctagagtaca cyggctttat ggacacggct 2520 tattatcagg gcttggggga cgatttgtca agtgttatac agagtacaat aacaaatgct 2580 gtgtcacaat cagtaggtca attgacatct gtacccaacc aacaccatga agcagggact 2640 gctaatccag ttaatgttgg tgctgtaccc gccctggaag ctgcggagac tggagttgcc 2700 tccgtcgtgg gtgcggatgt gtcatccacg attgagcctg gtgcatcgaa actaaccaat 2760 tccagcgaga cgtccgtggt caacatgctt tcacgttatt ggtacctcaa ccagctgaca 2820 ctcaatcacg gagcaaatgc ttcttctgcg gattcaggcg tcattcagct agatttgtca 2880 ccagggggac cgaacgccaa tgtgatgtca aaacttctta gggttttgct cagctcagcc 2940 acctactggc gctttgattt ggatctcgtt gtggtaccag tgcatttgga agggacacaa 3000 gcagtacagt atatggttga gttttgccca gtgggatctt ttgcatcttc aacatcacat 3060 ggatatgatg ctaagaataa aggagccaac cctaagatat tcacaacgac tgacaagcca 3120 ccagcctcaa tgcggatacc atttatgtgc cctgcctctt acttttgttc atcgtatgat 3180 ggctttaaaa catatgatgg ccaacattat ggcgcctgtc cttcaaacac ttttggtaat 3240 ttgataatag cattgccaaa tggatatagt acgcaaccca ggatcaagtt ttatctgtat 3300 gtgaggcctg tcaatatcga agcttatatg cctagacccc tagaccaggg tgacactaga 3360 ccagcaactc tatctagggg taggcttgag gttggtgaca ttgagaactt tacaaatgcc 3420 aaaccactga tcacagtgga agagcaggga ggtgattgga acgatgaact cccattgcaa 3480 tatccagaac ccaatctttc taatgaacag attcagatga cagtctgcta cagagaattt 3540 ggcagggact ttataacacc acaaatggtg tgccgatttt tcttccccag actcggatat 3600 ggcaccaact tttctcgccc gggagggcct tactatagag gctatgcttt aagatcacca 3660 gactggttcg agcgcaatgc ttatgttttc cagtcactgt atacaggcgt cttggaactt 3720 gcgcatgcag atgtgcttgt caggtgggtg gacttggaag ctgtgagagc ggatatagat 3780 aggtatatca actcaccaca cccgttggct ggattgatgc agaaccttgt tgctcgcctt 3840 gagctcaacg aaatgatcta ccagcagcgt attgctgcca tcctggaaag agcagtggat 3900 gatagtgatg atgaaggttc tgagagtgat gctagtgaca gtggatacta ttcgctggat 3960 agtatggggc tgagtgattt aaccagtgat tcagagtttg ggagtgatgt tgaataccaa 4020 ggccctattg acatcgttgc aaaccttgcc gccaacattg caagaccaac catagatgtg 4080 gcaactgact ctatgagtga ggccttggat aaagccttta ataaggcagt ccgatctgtc 4140 gaccaaacaa ttgagacaca tcggaggagc tggtggaagc aagtgttagg tattgtcaca 4200 aaattagttg ccgtagtcac agccatcaca cgatctggtg gcgaccctgt catcctggcc 4260 tcgatgggtg ctatgttatc agtagacctc atgaatgcgt gtccttttga atgggcaaaa 4320 caacaagtgg cccaactgat ggaggtggag aacattcagg aacaaggacc atctgactgg 4380 ttaaagtcct tcaattcggc cattacagca tctaaaggcc tagagtgggt tgttgggaag 4440 ctctgggatt tgatcaattg ggtcagagaa aagttgttgc caaaggctca ggcacgggag 4500 agagatgcga ccatcgttaa taacttggtc aaacacctcc gtgaatggag ggcgtgccaa 4560 ctaaaccctc atatatatac accagaatca atcagtgaac ttgctaaggc cattattgac 4620 ataagagaca tcttagagac aaggtgtcct gggcatcccg tgttgaggtc aatagcccct 4680 acagtggctg catgcgccaa acacctgtca aactccaaga agagaccgca tgaaccaatt 4740 ggactgctta ttcatggggc tccaggcaca gggaagagtc ttgcgaccaa actaattggg 4800 acaaagttag caaagaattt aggaaacatg gaaccttatt ttatgccacc tgacccgaag 4860 tattttgatg gctatgctgg acagcctgtg gtggttatgg acgatctagg acaaaacccg 4920 gatggtgagg acatgaaact actctgtcag atgatatcgt gtgcagagtt ctacaccccc 4980 caagctgatc tgcctgacaa agggaaacct tttacatcgt cctttgttct tgcttcaacc 5040 aacaacatga ccctcacccc gccaacaatt gcccacccga aagcattgaa tagacgcttc 5100 caactcgatt tgaacatcga agtacaacag gattataaag tggatgggaa gttggatatt 5160 gataaagcgt tggcaccttg tagtcacaca tccaaatcat ttgggaagtg ttgcccgttc 5220 atttgcgggc gagcagttag gttttatgat gtcaaaggtc gcttcgtcat gacactggat 5280 gaggttgtca ttgagctaca gaagatcaaa acacacaaaa ctgatgttag taacaaactt 5340 gacatctatc ttcagggacc aattctgaag aaagtgagtc agaaaggcaa gaaaccacca 5400 caagaggtct tggacttgat taaggaggat accaaccctt ctaggccaat gctccaatat 5460 gcacttgatc taggctttga gatcccagat gaacttatgg atgattttgt gtatcaacag 5520 atagatatga caacaaccaa ctggaagaat tgggccatct gtggaaccat gcttgtcacc 5580 ttacttacca cactttattt tatctggaaa tcattacctg caaacccaca gggtgcatat 5640 gatggcatta tccaaaagaa cctgagagtc ccagaaaaac ggaagattga agtgcaaggc 5700 cctgaccctg acacccaata tgccctgtcg ctgatgaaac acaatctgtt ccccatctcg 5760 accgcgacgg gtgaatttac agctttgggc atacatggga aaaattttat catccctaag 5820 catgcagctg ttgaacctta tctcgttgct ggcaaggaga taacggttga ttcagaagta 5880 gaattggtca acaagggcgg ttgtcttgaa ctggtgatgg tgtcatcatc tgacttgcaa 5940 gactttcgag atcttaggcc ccatatgctg gacagtttcc aaccaatgag tgattgtttg 6000 ctcgctgtga actcacctaa gttcccacgt accatcgtac cagtgggaaa agtccatgtg 6060 tatggttcca ttaacctcaa gcttgacaca gtgaagcggg tgatttacta tcactcaccc 6120 accaaacaag gctattgtgg cggggtcata ctcaaagcag ggaaaattat tggtatgcac 6180 atagctggcg atggagccaa cggctacgcc agcctcttgt tggccaacta ctttaaaatt 6240 gaaccacagg gagtgaagat agatttgggg ccagcaccca ggccttgcaa tgtgaacaag 6300 aagacaagac ttgagccgtc tgtgtggcat gacaagatca aggttaccaa gcagccagca 6360 gtcttgaagg atggagatcc cagatgcaca gtgcaattct cgaaacacct gtttgacaag 6420 tatagaggga actatgaagg acaggaacca gaggaacttg agatcgtgat agaacagtac 6480 gctgcccaac tccagcccct gttgcccaag gatgtgcatg aacccatgac tttgcaacag 6540 gtagtggagg gatatgggcg tttagatgga ttagacctga atacatctcc tggttatccg 6600 tactgtacgc agggagtgac taagcgaaag ttggttgcca atggttacag taagttgata 6660 gaaggcttag atctccatgg ttatggtctc ccctacgtca cttttttgaa agatgaactc 6720 aggccaatta agaaagtaga ggctggtaac accagactga tagagtgcag cagtatcaat 6780 gacacctgca gaatgaagat gaaatttggg agactgtttg aagcactatt atgcaacaat 6840 ggtgtggcta gtggggtggc tgttggttgt gatcctgaga tagactggac cagatttgcg 6900 acagaacttg gggacaatgt ttttgctttt gactataaga actttgacgc atcactgtca 6960 ccaatgtggt ttaaggccct ggacaagcta ctgcaacgct taggttttga cacggaagat 7020 ctgatcatag gcttgtgtaa ttcaacacac atttatgaga accaactcta tagaaccgtt 7080 ggtggcatgc catcaggttg ttcagggaca tcaatcttca atactctcat caacaacatg 7140 atcctgaaga cagcggcctt gcgtgcatac aggggattgg acttgaactc atttaaaata 7200 cttgcatatg gcgacgattg catcatgtcg tatgtgtatc ctctggaccc tgaacacatt 7260 gcaagaacag catcaatgtg gggtttgcaa ataacaccag cagacaaagg ggagcacttc 7320 cagccgccag gaccaattga aggggtcacc tttctgaaga gaggttttaa gaaacaccct 7380 tccacggata ttctttacca cccaatcttt gatgaagacg agatctacca atctttggct 7440 tggactaaga aaccatcaga gactcagaat cacatactgt cattgtgcca tctcatctgg 7500 cacaacggtg aagagtctta taacaagttt attgccctgg ttcgtagcga gccagtgggg 7560 agagcactac aactcccgcc atataaactt ttggagagag agtggttaga taacttttat 7620 tgacccgggg ccacgccgag taggatcgag ggtacaggtc attttattta gctgttaagt 7680 tttatttgtg ccgaggccac gcggagtacg atcgagggta cagcaccgat ttttgtaagt 7740 ttaatcatta gtttagcagt atagattttt gattgggcat tgcaaaaaaa aaaaaaaaaa 7800 a 7801 //