ID FR715041; SV 1; linear; genomic RNA; STD; VRL; 2594 BP. XX AC FR715041; XX DT 06-APR-2011 (Rel. 108, Created) DT 31-MAY-2011 (Rel. 109, Last updated, Version 2) XX DE Alfalfa mosaic virus RNA2 segment complete sequence, genomic RNA, isolate DE Tec1 XX KW complete viral segment. XX OS Alfalfa mosaic virus OC Viruses; Riboviria; Bromoviridae; Alfamovirus. XX RN [1] RP 1-2594 RA Parrella G.; RT ; RL Submitted (14-OCT-2010) to the INSDC. RL Parrella G., Istituto per la Protezione delle Piante, CNR- National RL Research Council, Via Universita 133 - Portici (NA), 80055, ITALY. XX RN [2] RX DOI; 10.1007/s00705-011-0941-z. RX PUBMED; 21327783. RA Parrella G., Acanfora N., Orilio A.F., Navas-Castillo J.; RT "Complete nucleotide sequence of a Spanish isolate of alfalfa mosaic virus: RT evidence for additional genetic variability"; RL Arch. Virol. 156(6):1049-1052(2011). XX DR MD5; 6c8e5a91598b77c0b21b7e6a7a3adae0. DR RFAM; RF00252; Alfamo_CPB. XX FH Key Location/Qualifiers FH FT source 1..2594 FT /organism="Alfalfa mosaic virus" FT /segment="RNA2" FT /host="Tecomaria capensis" FT /isolate="Tec1" FT /mol_type="genomic RNA" FT /country="Spain:Almeria" FT /collected_by="Giuseppe Parrella" FT /identified_by="Giuseppe Parrella" FT /db_xref="taxon:12321" FT 5'UTR 1..55 FT /gene="2a" FT CDS 56..2428 FT /gene="2a" FT /product="89.7 kDa protein" FT /function="RNA-dependent RNA polymerase" FT /db_xref="GOA:F2QAH1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F2QAH1" FT /protein_id="CBX36145.1" FT /translation="MFTLLRCLGFGVSEPTDTSSSEYVPKSPVEEISNEVTELDSVDPS FT FQCYERILVSLMLVRKMTQAAEDFYKSFGGELDSPCCRVYRLYRHFVNEDDAPAWAIPN FT VVNEDSYDEYAYLQEELDAINNTFELLNEERELSEITDRLDALRFFPVSKTEALPVADV FT QEVKLISENIPVIDDLYYYSDENIPSEMPSPLLDELGKLPEDLGPLNEIEDIKPVAAPI FT TLLSEFKASDNAKPLDIVEIIPDVSLTKPYEAVISGNDWMTLGRMIPTTPIPTIRDVFF FT SGLSRHGSPEVIQNALDEFLPLHHSIDDKYFQEWVETSDKSLDVDPCRIDLSVFNNWQS FT SESCYDTRFKTGALSTRKGTRTEALLAIKKRNVNVPNLGQIYDVNSVANSVVNKFLTTV FT IDPDKLCMFPDFISEGEVSYFQDYIVGKNPDPELYSDPLGIRSIDSYKHMIKSVLKPVE FT DNSLHLERPMPATITYHDKDIVMSSSPIFLAAAARLMLILRDKITIPSGKFHQLFSIDA FT EAFDASSHFKEIDFSKFDKSQNELHHLIQERLLKYLGIPNEFLTLWFNAHRKSRISDSK FT NGVFFNVDFQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEEL FT PRDQEFLFTTLFNLEAKFPHNQPFICSKSLITMPTLSGSKVVLPVPNPLKLLIRLGSKK FT VNADIFDEWYQSWIDIIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFAGK FT TLCKECLFNEKHESNVKIKPRRVKKSHSDARSRARRA" FT 3'UTR 2429..2594 FT /gene="2a" XX SQ Sequence 2594 BP; 729 A; 532 C; 553 G; 780 T; 0 other; gtttttatct tttcgcgatt gaaaagataa gtttttcagt ttaatctttt tcaatatgtt 60 cactcttttg agatgtcttg gattcggtgt cagtgaacct actgacactt cctcatcaga 120 gtatgttccc aagagtcccg ttgaggagat ttccaacgaa gttactgaac ttgattcagt 180 agacccatca ttccaatgtt acgaacgtat cctcgtgtca ttgatgctcg taagaaagat 240 gactcaagct gccgaggact tctacaaatc ttttggggga gaactcgata gcccttgttg 300 tagggtttac cgtctttata gacatttcgt taatgaagac gatgcacctg cttgggccat 360 accgaatgtc gtgaatgagg attcttacga cgaatatgcc tacctccaag aggagttaga 420 tgccatcaac aacacttttg agttgttaaa tgaagagcgc gagttatcgg aaattacgga 480 caggctcgat gctttaagat tcttccctgt ttctaaaaca gaagcgctac cagtggcgga 540 tgtccaagag gttaaactca tttctgagaa cataccagtt attgatgacc tttattatta 600 ctctgacgag aatattccgt ctgaaatgcc ctcaccattg ctggatgagt tggggaagtt 660 accggaggat cttggacctc tgaatgaaat tgaagacatt aagccggtgg cggctccgat 720 cacgttacta tctgagttta aagcctcgga taatgctaag ccactcgaca tagtcgaaat 780 tattccggac gtaagtctga cgaaacctta tgaagccgtc atatcaggta atgattggat 840 gacgttgggg aggatgatac ctaccactcc cattcctacc ataagggatg tcttcttctc 900 tggcctttct cggcatgggt cgccggaagt gatccagaat gctcttgatg aatttcttcc 960 gctccatcat tcaattgatg ataagtattt tcaagaatgg gttgaaactt cagataaatc 1020 tctcgatgtc gatccatgtc gaatcgatct gagtgttttc aacaactggc agtcttcgga 1080 aagctgctat gatactcggt ttaaaaccgg tgcattatcc acacgtaagg gcactcgaac 1140 tgaagcccta ttagcaataa agaaacgtaa tgtgaatgtg cctaacctgg ggcagattta 1200 tgacgtgaat tctgttgcta attccgtggt taataagttc ttaacaactg ttatagatcc 1260 tgataagttg tgcatgtttc cagattttat atctgagggt gaagtttcat atttccagga 1320 ctatatagtt gggaagaatc ccgaccctga attatattca gaccctctag gtattcgttc 1380 catcgacagc tataaacaca tgattaaatc cgtgttaaag cccgttgaag ataattctct 1440 gcacctagaa cggccgatgc cagcaaccat aacataccat gataaagata tcgtgatgtc 1500 atcttcacca atttttttgg ctgctgctgc ccgcttgatg ctgatcttaa gagataagat 1560 taccatacca agcgggaaat tccatcaatt gttttccatc gatgctgaag cctttgatgc 1620 aagttcccat tttaaagaga tagacttttc gaagttcgac aaaagtcaaa atgagttgca 1680 tcacttgatc caagaaaggc tcctgaaata cttaggtata cccaacgaat ttctgacctt 1740 atggtttaat gcgcatagaa aatcccgaat ttcagattcg aagaacggtg ttttctttaa 1800 cgtcgacttc cagcgtcgta ctggagacgc gctcacatac ttgggaaaca caatagtgac 1860 attagcttgt ctgtgtcacg tgtataactt gatggaccca aatgtgaaat tcgttgtcgc 1920 ttccggtgat gattcattga taggtactgt ggaggaatta ccaagagatc aagagtttct 1980 tttcacgact ctttttaatc ttgaggcaaa atttcctcat aaccagcctt tcatatgcag 2040 taagtctttg attactatgc ccactttgag tggaagcaaa gtcgtactgc cggtaccgaa 2100 tccattgaaa ctcctcatac gcttgggttc gaagaaagtc aatgccgata tattcgatga 2160 atggtatcaa tcttggattg atataattgg tgtttttaat gatcaccatg tcatccgatg 2220 cgttgccgcg atgacagcac ataggtatct cagaagaccg agtttatacc tagaagctgc 2280 tttggaatcc ctaggtaaga tcttcgctgg taagaccttg tgtaaggaat gcctctttaa 2340 tgagaagcac gagtctaatg taaaaattaa gcctcgtaga gtgaaaaaat cccactcgga 2400 tgccaggtca agggcacgcc gagcttgatg ttttcttgac ataagtcaaa ttgccaacct 2460 ccactgggtg gattaaggtt gaggtataga atcctattcg ctcctgatag gagaaattct 2520 atattgctta tatatgtgct tatgcacata tataaatgct catgcaaaat tgcatgaatg 2580 cccctaaggg atgc 2594 //