ID   FR696613; SV 1; linear; genomic RNA; STD; VRL; 1059 BP.
XX
AC   FR696613;
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DT   05-DEC-2010 (Rel. 107, Created)
DT   05-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE   Rice ragged stunt virus segment RNA4 p4b gene and partial RdRp gene,
DE   genomic RNA, isolate Longan
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KW   .
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OS   Rice ragged stunt virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus.
XX
RN   [1]
RP   1-1059
RA   Hoang H.T.T.;
RT   ;
RL   Submitted (05-OCT-2010) to the INSDC.
RL   Hoang H.T.T., Plant Cell of Biotechnology, Institute of Biotechnology, 18
RL   Hoang Quoc Viet, Cau Giay, Hanoi, 10000, VIET NAM.
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RN   [2]
RA   Hoang H.T.T., Lam N.D., Nguyen C.N., Chu H.H.;
RT   "Genetic variation of Rice ragged stunt virus isolated in Vietnam";
RL   Unpublished.
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DR   MD5; 0f057610fd0b30d1de4696392a862142.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1059
FT                   /organism="Rice ragged stunt virus"
FT                   /segment="RNA4"
FT                   /isolate="Longan"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Long An Province, Cuulong River Delta"
FT                   /isolation_source="rice leaf tissue lysate"
FT                   /db_xref="taxon:42475"
FT   CDS             <2..>1057
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="hypothetical protein"
FT                   /db_xref="UniProtKB/TrEMBL:E5AXX1"
FT                   /protein_id="CBX26677.1"
FT                   /translation="IWRQCVAACLAFEPQIQNNNSTQSSNLNNLVKRMFATLLKPIGRL
FT                   PFYERRRNFVWEEEVSCPTILPLLLYSIQNLVTQFCAGVINRMEMILAFQYYLDCGVTA
FT                   YQDEKLRLQKLIRNWLREGLAKFSKIAMPNWTVSGVISCTTVKPIMITTHEAREIKSAR
FT                   EAREASVPTYLLQYINHAIHKAISPYQTHQYWQATRVFANDGTYFASVAALTLNKAVRP
FT                   RIEETTVKYPNSRYLTMNKEHIAVTLPNETDTNFGLACQFVKQFIPRLVTRLKNTNFQE
FT                   EFIAFLTSSSSGKDFEDAAIATMTRTIQRVAKKRIVAAGLESRSYLNQQFIADECLAAA
FT                   KLVGRTQIGRRQ"
FT   CDS             25..1005
FT                   /gene="p4b"
FT                   /product="hypothetical protein"
FT                   /db_xref="UniProtKB/TrEMBL:E5AXX2"
FT                   /protein_id="CBX26678.1"
FT                   /translation="MPSVRASDPKQQLYPIVELEQLSQEDVRNIAKTHRSPTLLRTQTK
FT                   FCVGRRGELSYDTTPAPLQYSEPGDSILRGSDKQDGNDSSLSILSRLWCYGVSRRKAQA
FT                   SEIDSELVARGISKVLEDSHAKLDGFGSHQLYDSQTYNDYYSRSAGNQISERGEGGERS
FT                   NLFIAVHKPRHPQSYQPVSDPSVLAGYESVRERRDVFRFGGGTNFEQGGSTENRGNYSE
FT                   IPELTLFNYEQGTHSGHATERDGYKFWSGMSICETIYTATRDEIEEYELSRGIHSVPDI
FT                   IELRQRLRRRSHRNYDANHSTGGEEENSGSRSRIAELSQPTIHRR"
XX
SQ   Sequence 1059 BP; 320 A; 241 C; 261 G; 237 T; 0 other;
     tatttggcgt cagtgtgtag cagcatgcct agcgttcgag cctcagatcc aaaacaacaa        60
     ctctacccaa tcgtcgaact tgaacaactt agtcaagagg atgttcgcaa cattgctaaa       120
     acccatcggt cgcctaccct tctacgaacg cagacgaaat tttgtgtggg aagaagaggt       180
     gagttgtcct acgatactac ccctgctcct ttacagtatt cagaacctgg tgactcaatt       240
     ctgcgcggga gtgataaaca ggatggaaat gattctagcc tttcaatatt atctagactg       300
     tggtgttacg gcgtatcaag acgaaaagct caggcttcag aaattgattc ggaattggtt       360
     gcgcgaggga ttagcaaagt tctcgaagat agccatgcca aattggacgg tttcgggagt       420
     catcagctgt acgacagtca aacctataat gattactact cacgaagcgc gggaaatcaa       480
     atcagcgaga gaggcgaggg aggcgagcgt tccaacttat ttattgcagt acataaacca       540
     cgccatccac aaagctatca gcccgtatca gacccatcag tattggcagg ctacgagagt       600
     gttcgcgaac gacgggacgt atttcgcttc ggtggcggca ctaactttga acaaggcggt       660
     tcgaccgaga atagaggaaa ctacagtgaa atacccgaac tcacgttatt taactatgaa       720
     caaggaacac atagcggtca cgctaccgaa cgagacggat acaaattttg gtctggcatg       780
     tcaatttgtg aaacaattta taccgcgact cgtgacgaga ttgaagaata cgaactttca       840
     agaggaattc atagcgttcc tgacatcatc gagctcaggc aaagacttcg aagacgcagc       900
     catcgcaact atgacgcgaa ccattcaacg ggtggcgaag aagagaatag tggcagcagg       960
     tctagaatcg cggagttatc tcaaccaaca attcatcgcc gatgagtgct tagccgccgc      1020
     aaaattagtg ggtcgcaccc agattggaag gagacagag                             1059
//