ID FR694925; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC FR694925; XX DT 04-OCT-2010 (Rel. 106, Created) DT 04-OCT-2010 (Rel. 106, Last updated, Version 1) XX DE Bhendi yellow vein mosaic virus complete sequence, isolate Himachal XX KW complete genome. XX OS Bhendi yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Kumar Y.; RT ; RL Submitted (01-OCT-2010) to the INSDC. RL Kumar Y., Plant Virus Lab, Floriculture Division, Institute of Himalayan RL Bioresource Technology (CSIR), PO Box 6, Palampur, Himachal Pradesh 176061, RL INDIA. XX RN [2] RA More P., Kumar Y., Hallan V., Zaidi A.A.; RT "Characterization and infectivity of Bhendi yellow vein mosaic virus, RT isolated from Himachal Pradesh"; RL Unpublished. XX DR MD5; f0eed056f5561dfb1580ecd6c8282981. DR EuropePMC; PMC3824786; 28324417. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Bhendi yellow vein mosaic virus" FT /host="Abelmoschus esculentus" FT /isolate="Himachal" FT /mol_type="genomic DNA" FT /country="India:Palampur, Himachal Pradesh" FT /isolation_source="host leaf" FT /collected_by="More Prashant" FT /identified_by="More Prashant" FT /clone="Ok1" FT /PCR_primers="fwd_seq: rca, rev_seq: rca" FT /db_xref="taxon:120168" FT CDS 121..486 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:E1Y7F1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E1Y7F1" FT /protein_id="CBX25662.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSTGM" FT CDS 281..1051 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:E1Y7F2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E1Y7F2" FT /protein_id="CBX25663.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEHALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1054..1458) FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:E1Y7F3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E1Y7F3" FT /protein_id="CBX25664.1" FT /translation="MDSRTGERITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI FT ITIRIHFNYNLRKALGIHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVINKTMYVDQYSDIQFKLY" FT CDS complement(1151..1603) FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:E1Y7F4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E1Y7F4" FT /protein_id="CBX25665.1" FT /translation="MRSSSPSKNHCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSGKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNNQDPFQLQP FT TESSGNTQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNLN" FT CDS complement(1500..2591) FT /gene="C1" FT /product="rep" FT /function="replication initiator protein" FT /db_xref="GOA:E1Y7F5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E1Y7F5" FT /protein_id="CBX25666.1" FT /translation="MAPPKQFQIYAKNYFLTYPTCSLTKDEALSQLQNLQTPVNKKYIR FT ICREFHENGEPHLHVLIQFEGKYQCKNNRFFNLISPTRSAHFHPNIQGAKSSSDVKSYI FT AKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSESLRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWVSENVVDAAARPLRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALKNWAVKNAIFITLEEPL FT YSGTNQSTAQGSEETQQEEESRS" FT CDS complement(2132..2434) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E1Y7F6" FT /protein_id="CBX25667.1" FT /translation="MGNLIFTCSSSSRANTNAKITDSSTSYPQPGQHISIQTFRELNPA FT PTSSPTSLRTGTFSTGANFRSTEDQQEEGNKQPTTLTPQHLTREVSQSLLESLRN" XX SQ Sequence 2739 BP; 720 A; 536 C; 650 G; 833 T; 0 other; accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct ttggctataa gtacttgcgc actaagttta aattcaaaac 120 atgtgggatc cactattaaa cgagttcccg gatacggttc acgggtttcg ttgtatgcta 180 tctgtaaaat atttgcaact tttgtcgcag gattattctc cagatacgct tgggtacgag 240 ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagcccata 360 caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaaaccca gaatgtaccg gatgtacaga agtccggatg ttccacgggg 480 atgtgagggt ccctgtaagg tacagtcgtt tgaatctcga cacgatgtcg ttcatattgg 540 taaggtaatg tgtatttcgg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaaaata tggatggacg agaacatcaa 660 gaccaagaac catacgaatt cggtgatgtt tttccttgtt cgtgatcgac gaccggtaga 720 taaaccacaa gattttggtg aagtatttaa tatgtttgat aacgagccta gtacggcgac 780 cgtgaagaac atgcataggg accggtacca ggtgttgagg aaatggcatg caaccgttac 840 tggtggacaa tatgcgagta aggagcacgc tttggtcaag aagtttgtta gggttaacaa 900 ctacgttgtt tacaaccagc aggaagcagg aaaatacgag aatcacaccg agaatgcatt 960 gatgctttac atggcttgta ctcatgctag caacccagtg tatgctactc ttaagattag 1020 aatatatttt tatgactctg taacgaacta atattaataa agtttaaatt gtatatctga 1080 atattggtct acatacattg ttttattaat tacattgtac aatacatgtt caacggcttt 1140 aataactaaa ttaattgaga ttacacctag attgttgaga tatttgagga cttgggtttt 1200 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc ggaaggttag 1260 aaaacacttg tgtattccca gagctttccg taggttgtag ttgaaatgga tcctgattgt 1320 tattatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ttgaggatct tgaaatagag 1380 gggatttgga accttccaga tatagacgcc attctttgcc tgagctgcag tgatgcgttc 1440 ccctgtgcga gaatccatgg ttgtggcagt taattgaaag ataataagaa cacccgcatt 1500 caagatctac tctcctcctc ctgttgcgtc tcttcgcttc cctgtgctgt actttgattg 1560 gtacctgagt acagtggttc ttcgagggtg atgaagatcg cattcttgac tgcccagttc 1620 tttagtgcgt tgttcttttc ctcgtccagg aattctttat aactgctgtt gggaccagga 1680 ttgcagagga agattgttgg tattccgcct ttaatttgaa ctggcttccc gtactttgta 1740 ttagattgcc agtccctttg ggcccccatg aactctttaa agtgcttgag gaagtgcgga 1800 tcaacgtcat caatgacgtt ataccaagcg tcgttactgt atacctttgg acttagatct 1860 aaatgcccac ataaatagtt atgtgggcct aaagacctag cccacattgt tttcccagta 1920 cgactgtcac cctcaattac tatactttga ggtctcaggg gccgcgcagc ggcgtcgaca 1980 acattctcag acacccactc ttcaagttct tctggaactt gatcgaaaga agaagaggaa 2040 aaaggagaaa cataaggagc tggaggctcc tgaaagatcc tgtctagatt tgcatttaaa 2100 ttatgaaatt gtagtacaaa atctttagga gctagttcct taatgactct aagagactct 2160 gacttacttc ccgcgttaag tgctgcggcg taagcgtcgt tggctgtttg ttgccctcct 2220 cttgctgatc ttccgtcgat ctgaaattcg ccccagtcga gaatgtcccc gtccttagcg 2280 atgtaggact tgacgtcgga gctggattta gctccctgaa tgtttggatg gaaatgtgct 2340 gacctggttg gggatatgag gttgaagaat cggttatttt tgcattggta tttgccctcg 2400 aactggatga gcacgtgaag atgaggttcc ccattttcat gaaactctct gcagattcta 2460 atgtattttt tgtttactgg tgtctgtagg ttttgtaatt gggaaagtgc ttcatcttta 2520 gtaagagagc aagtgggata agtgaggaaa taatttttgg catatatctg aaattgtttg 2580 ggaggagcca ttgacttggt caatcggtac ccagatctag tcttatgtca attggtgaac 2640 ggtaccctat atatagtggg tactgaatgg caatatttgt aattatgaaa ataaattcaa 2700 aatcctcacg ctccaaaaag cggccatccg tataatatt 2739 //