ID   FR694200; SV 1; linear; genomic RNA; STD; VRL; 1192 BP.
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AC   FR694200;
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DT   23-DEC-2010 (Rel. 107, Created)
DT   23-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE   Avian orthoreovirus segment S4, strain AVS-B, genomic RNA
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KW   .
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OS   Avian orthoreovirus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus.
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RN   [1]
RP   1-1192
RA   Banyai K.;
RT   ;
RL   Submitted (29-SEP-2010) to the INSDC.
RL   Banyai K., Hungarian Academy of Sciences, Veterinary Medical Research
RL   Institute, Hungaria krt. 21., Budapest, H-1143, HUNGARY.
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RN   [2]
RA   Banyai K., Dandar E., Dorsey K.M., Mato T., Palya V.;
RT   "The genomic constellation of a novel avian orthoreovirus strain associated
RT   with runting-stunting syndrome in broilers";
RL   Virus Genes 0:0(2010).
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DR   MD5; 3cdcd2b346a32a9641f9cc7b955b736e.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1192
FT                   /organism="Avian orthoreovirus"
FT                   /segment="S4"
FT                   /strain="AVS-B"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:38170"
FT   CDS             24..1127
FT                   /gene="sigma-NS"
FT                   /product="sigma-NS protein"
FT                   /db_xref="GOA:E7AXT9"
FT                   /db_xref="InterPro:IPR002507"
FT                   /db_xref="UniProtKB/TrEMBL:E7AXT9"
FT                   /protein_id="CBX25032.1"
FT                   /translation="MDNTVRVGVSRNTSGAAGQTVFRNYYLLRCNISADGRNATKAVQS
FT                   HFPFLSRAVRCLSPLAAHCADRTLRRDNVKQILTRELPFPSDLINYAHHVNSSSLTTSQ
FT                   GVEAARLVAQVYGEQLSFDHIYPTGSATYCPGAIANAISRIMAGFVPHEGDNFTPDGAI
FT                   DYLAADLVAYKFVLPYMLDIVDGRPQIVLPSHTVEEMLSNTSLLNSIDASFGIESKSDQ
FT                   RMTRDAAEMSSRSLNELEDHEQRGRMPWKIMTAMFAAQLKVELDALADERVESQANAHV
FT                   TSFGSRLFNQMSAFVPIDRELMELALLIKEQGFAMNPGQVASKWSLIRRSGPTRPLSGA
FT                   RLEIRNGNWTIREGDQTLLSVSPARMA"
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SQ   Sequence 1192 BP; 261 A; 318 C; 295 G; 318 T; 0 other;
     gctttttgag tccttgtgca gccatggaca acaccgtgcg tgttggagtt tcccgcaaca        60
     catccggcgc agctggtcag actgttttta gaaactacta cctactacga tgcaacatct       120
     cagctgacgg tcgtaatgca acaaaagctg tgcaatccca ctttccattc ctttctcgtg       180
     ctgtccgatg cttatctcct ctagctgctc attgtgccga taggactctc cgtcgtgaca       240
     acgtgaagca gattctcact cgtgaactac catttccatc ggatctaatc aattacgcgc       300
     accacgtgaa ttcatcctcg cttactactt ctcagggtgt tgaggcagcc cgtctggtgg       360
     ctcaagttta tggagagcaa ctgtcatttg accacatcta ccccactggt tctgcaacat       420
     actgccctgg agcgattgcg aatgcgattt cccgtatcat ggctggcttc gtcccccacg       480
     aaggcgacaa ctttacccca gatggtgcca tcgattatct cgctgcagat ctggtcgcgt       540
     acaagtttgt gcttccttac atgctagaca ttgtggacgg gcgtccgcag attgttctcc       600
     catctcacac tgttgaggaa atgctgtcca acacgagctt gcttaattca attgacgctt       660
     catttggtat tgaatctaag agcgatcaac gcatgacccg tgacgcggct gaaatgagtt       720
     ctcgttcact taatgagctt gaggatcacg agcagagggg tcgaatgcct tggaaaatca       780
     tgacggcgat gttcgcggcg caactgaagg tggagctgga tgccctagct gatgagcggg       840
     ttgagtctca ggctaatgct cacgtgacat cttttgggtc tcgtctgttc aaccagatgt       900
     ctgcttttgt cccgattgat cgtgagttga tggagctggc tctactcatt aaagaacaag       960
     gtttcgcaat gaatccaggg caagttgcat ctaaatggtc gctgatacga cgatctggtc      1020
     ccactcgccc actctcaggc gcgcgccttg agatcagaaa tggtaactgg acgattcgtg      1080
     aaggtgacca gacacttctg tctgtctctc cagctaggat ggcgtaaacg ggacccatgg      1140
     tgcgggtgag gggccgccac accctctgcc gcgacctgga ctcttattca tc              1192
//