ID   FR694199; SV 1; linear; genomic RNA; STD; VRL; 1202 BP.
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AC   FR694199;
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DT   23-DEC-2010 (Rel. 107, Created)
DT   23-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE   Avian orthoreovirus segment S3, strain AVS-B, genomic RNA
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KW   .
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OS   Avian orthoreovirus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus.
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RN   [1]
RP   1-1202
RA   Banyai K.;
RT   ;
RL   Submitted (29-SEP-2010) to the INSDC.
RL   Banyai K., Hungarian Academy of Sciences, Veterinary Medical Research
RL   Institute, Hungaria krt. 21., Budapest, H-1143, HUNGARY.
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RN   [2]
RA   Banyai K., Dandar E., Dorsey K.M., Mato T., Palya V.;
RT   "The genomic constellation of a novel avian orthoreovirus strain associated
RT   with runting-stunting syndrome in broilers";
RL   Virus Genes 0:0(2010).
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DR   MD5; 3d03f2be045533d8f9497da50dc1636e.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1202
FT                   /organism="Avian orthoreovirus"
FT                   /segment="S3"
FT                   /strain="AVS-B"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:38170"
FT   CDS             31..1134
FT                   /gene="sigma-B"
FT                   /product="sigma-B protein"
FT                   /db_xref="GOA:E7AXT8"
FT                   /db_xref="InterPro:IPR000153"
FT                   /db_xref="InterPro:IPR023634"
FT                   /db_xref="UniProtKB/TrEMBL:E7AXT8"
FT                   /protein_id="CBX25031.1"
FT                   /translation="MEVRVPNFHSFVEGITSSYLQTPACWNAQTAWDTVTFHVPDVIRV
FT                   GNAYCCSQCCGVLYYGTLPSDGNYFPHHKCHQQQFRTDTPLLRYVRIGRTTEHLLDQYA
FT                   VALESIAEHYDEISQRMVDEPENDEVTPLDIVTRTESIRSDKAVDPDFWTYPLERRSDD
FT                   SRRDIASACWKMIDASSRSLTLPNCLVSPSVHSRSVFGQMQTTTTIYDVAASGKAVKFS
FT                   PMVATLAQRDAGPVTLANADPADGVYSFWTSHFAFSPLIGGVGITGQYARESYHHVGHP
FT                   VIGSGKKASHYRNLFMEAWRGWSKSAFACATGMEPAECESRLRGHARTMLGRSLPNVCD
FT                   DDVAQQSGAVLASLQKTTKFTVVECGW"
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SQ   Sequence 1202 BP; 267 A; 309 C; 311 G; 315 T; 0 other;
     gctttttgag tccttagcgt gcaagccgca atggaggtac gtgtgccaaa ctttcactcg        60
     ttcgttgaag gaataacatc cagttactta cagactcctg cttgttggaa tgcacaaaca       120
     gcctgggaca ctgtgacctt tcatgtccct gatgtcatta gagtcggtaa cgcgtactgt       180
     tgttctcagt gctgcggtgt actttactac ggaactctgc catccgacgg gaattacttc       240
     cctcatcaca aatgtcatca gcaacagttt aggactgata ccccgctact gcgatacgta       300
     aggatcggca gaacgactga gcatttgctg gatcagtatg ccgtcgcttt ggagtctatc       360
     gccgaacact atgatgagat cagccaacgt atggttgatg agcctgagaa tgatgaagtt       420
     acgccccttg acatcgtaac gcgcaccgag tctatcagaa gtgacaaggc agtggacccg       480
     gacttttgga cctatccact tgagcgacgc tctgatgact ctcgccggga tatcgcctca       540
     gcatgctgga aaatgattga tgcgtcctca cgtagtctga ccctccccaa ctgtcttgtt       600
     tctccatctg tgcattcacg ttccgtcttt ggtcaaatgc aaacgaccac caccatatac       660
     gatgttgctg cgtctggaaa ggcagttaag ttttctccga tggttgctac cctcgctcaa       720
     cgcgatgctg ggcctgtgac gctcgcaaac gctgatccag ctgacggcgt atactcgttt       780
     tggacatcac actttgcctt ttcgccactc attggtggag tcgggattac agggcaatat       840
     gctcgcgagt cataccacca cgtgggtcat ccggtaattg ggagcggtaa gaaggcgtcg       900
     cactacagaa atctgttcat ggaagcgtgg cgtgggtggt cgaagtccgc ttttgcgtgt       960
     gctacaggta tggagcctgc tgaatgtgag tcccgtttga gaggacacgc ccgcaccatg      1020
     ctcggacggt ctctaccaaa tgtctgtgat gatgatgtcg ctcaacagtc tggtgctgtg      1080
     ctagcatctc tgcagaagac taccaaattc actgtggtgg agtgtggttg gtaagtgcct      1140
     ccgggtcaaa atgcacatag gctcccacct atgtgacggt tagcgggact cgcctattca      1200
     tc                                                                     1202
//